KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:02 2014 Check: 00 .. Name: ENSP00000260402/1-1185 Len: 1665 Check: 2611 Weight: 1.00 Name: ENSTTRP00000000038/1-1184 Len: 1665 Check: 4637 Weight: 1.00 Name: ENSBTAP00000025402/1-1171 Len: 1665 Check: 5726 Weight: 1.00 Name: bmy_00636T0/1-1193 Len: 1665 Check: 1790 Weight: 1.00 Name: BACU008536/1-1475 Len: 1665 Check: 2528 Weight: 1.00 // 1 50 ENSP00000260402/1-1185 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000038/1-1184 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025402/1-1171 ---------- ---------- ---------- ---------- ---------- bmy_00636T0/1-1193 ---------- ---------- ---------- ---------- ---------- BACU008536/1-1475 SRQGEAGRGP APVAPASLLL WLPQGCSGNL SVPAVAMHSA GPHGAESPMS 51 100 ENSP00000260402/1-1185 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000038/1-1184 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025402/1-1171 ---------- ---------- ---------- ---------- ---------- bmy_00636T0/1-1193 ---------- ---------- ---------- ---------- ---------- BACU008536/1-1475 RQEEKDAELD RRIVALRKKN QALLRRYQEI QEDRRQAEQG GMAGTTPELL 101 150 ENSP00000260402/1-1185 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000038/1-1184 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025402/1-1171 ---------- ---------- ---------- ---------- ---------- bmy_00636T0/1-1193 ---------- ---------- ---------- ---------- ---------- BACU008536/1-1475 RPDGLTVTIS QVPGGKRVVS RNWARSALGP GAANEMLEDE EAEAHTGAFC 151 200 ENSP00000260402/1-1185 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000038/1-1184 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025402/1-1171 ---------- ---------- ---------- ---------- ---------- bmy_00636T0/1-1193 ---------- ---------- ---------- ---------- ---------- BACU008536/1-1475 LGERVELAVT MENKAEAKRI VSEKPTRARS QGAEGSPGGG LGRSPSMQMA 201 250 ENSP00000260402/1-1185 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000038/1-1184 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025402/1-1171 ---------- ---------- ---------- ---------- ---------- bmy_00636T0/1-1193 ---------- ---------- ---------- ---------- ---------- BACU008536/1-1475 ISSDSARKGV REPQSPGLVP GPAPPRPVGG PPEVGWDYAQ WKQEREQIDL 251 300 ENSP00000260402/1-1185 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000038/1-1184 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025402/1-1171 ---------- ---------- ---------- ---------- ---------- bmy_00636T0/1-1193 ---------- ---------- ---------- ---------- ---------- BACU008536/1-1475 ARLARHRDAQ GDWRRPWDLD KAKPTPQDSS KPREEGPARV GSTRGLRGHR 301 350 ENSP00000260402/1-1185 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000038/1-1184 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025402/1-1171 ---------- ---------- ---------- ---------- ---------- bmy_00636T0/1-1193 ---------- ---------- ---------- ---------- ---------- BACU008536/1-1475 KLQPPPLPPD GKGTLSFQTL CPVMKKPHPT TAALPRPLQR SQVATRAQCA 351 400 ENSP00000260402/1-1185 ---------- ---------- -------MSL LNPVLLPPKV KAYLSQGERF ENSTTRP00000000038/1-1184 ---------- ---------- -------MSL LNPVLQPPGV KAYLSQGERF ENSBTAP00000025402/1-1171 ---------- ---------- -------MSL LNPVLLPPTV KAYLSQGERF bmy_00636T0/1-1193 ---------- ---------- -------MSL LNPVLQPPGV KAYLSQGERF BACU008536/1-1475 DQGWNSRPIA QPLTPEAQPL LRRTLGTMSL RNPVLQPPGV KAYLSQGERF 401 450 ENSP00000260402/1-1185 IKWDDETTVA SPVILRVDPK GYYLYWTYQS KEMEFLDITS IRDTRFGKFA ENSTTRP00000000038/1-1184 IRWDDETTIA SPVILRVDPK GYYLYWTYQN KEMEFLDITS IRDTRFGKFA ENSBTAP00000025402/1-1171 IKWDDETTIA SPVILRVDPK GYYLYWTYQS KEMELLDITS IRDTRFGKFA bmy_00636T0/1-1193 IRWDDETTIA SPVILRVDPK GYYLYWTYQS KEMEFLDITS IRDTRFGKFA BACU008536/1-1475 IRWDDETTIA SPVILRVDPK GYYLYWTYQS KEMEFLDITS IRDTRFGKFA 451 500 ENSP00000260402/1-1185 KMPKSQKLRD VFNMDFPDNS FLLKTLTVVS GPDMVDLTFH NFVSYKENVG ENSTTRP00000000038/1-1184 KMPKSQKLRD VFNMDFPDNN FLLKTLTVVS GPDMVDLTFH NFVSYKENVG ENSBTAP00000025402/1-1171 KMPKSQKLRE VFNMNIRDN- FLLKTLTVVS GPDMVDLTFH NFVSYKDNVG bmy_00636T0/1-1193 KMPKSQKLRD VFNMDFPDNN FLLKTLTVVS GPDMVDLTFH NFVSYKENVG BACU008536/1-1475 KMP------- ---------- ---------- ---------- ---------- 501 550 ENSP00000260402/1-1185 KAWAEDVLAL VKHPLTANAS RSTFLDKILV KLKMQLNSEG KIPVKNFFQM ENSTTRP00000000038/1-1184 KDWAEDVLAL AKHPLMANAS RSTFLDKSLV KLKMQLNPEG KIPVKNFFQM ENSBTAP00000025402/1-1171 KDWAEDVLAL AKHPLTANAS RSTFLDKILV KLKMQLNPEG KIPVKN-FQM bmy_00636T0/1-1193 KDWAEDVLAL AKHPLTANAS RSTFLDKS-- ---------- ------FFQM BACU008536/1-1475 KDWAEDVLAL AKHPLTANAS RSTFLDKSLV KLKMQLNPEG KIPVKNFFQM 551 600 ENSP00000260402/1-1185 FPADRKRVEA ALSACHLPKG KNDAINPEDF PEPVYKSFLM SLCPRPEIDE ENSTTRP00000000038/1-1184 FPADRKRVEA ALSACHLPKG KNDAINPEDF PESVYKSFLM SLCPRPEIDE ENSBTAP00000025402/1-1171 FPADRKRVEA ALSACHLPKG KNDAINPEDF PESVYKSFLM SLCPRPEIDE bmy_00636T0/1-1193 FPADRKRVEA ALSACHLPKG KNDAINPEDF PESVYKSFLM NLCPRPEIDE BACU008536/1-1475 FPADRKRVEA ALGACHLPKG KNDAINPEDF PESVYKSFLM NLCPRPEIDE 601 650 ENSP00000260402/1-1185 IFTSYHAKAK PYMTKEHLTK FINQKQRDSR LNSLLFPPAR PDQVQGLIDK ENSTTRP00000000038/1-1184 IFTSYHAKAK PYMTKEHLAK FINQKQRDSR LNSLLFPLAR PDQVQGLIDK ENSBTAP00000025402/1-1171 IFTSYHSKAK PYMTKEHLAK FINQKQRDSR LNSLLFPPAR PDQVQGLIDK bmy_00636T0/1-1193 IFTSYHAKAK PYMTKEHLAK FINQKQRDSR LNSLLFPPAR PDQVQGLIDK BACU008536/1-1475 IFTSYHAKAK PYMTKEHLAK FINQKQRDSR LNSLLFPPVR PDQVQGLIDK 651 700 ENSP00000260402/1-1185 YEPSGINAQR GQLSPEGMVW FLCGPENSVL AQDKLLLHHD MTQPLNHYFI ENSTTRP00000000038/1-1184 YEPRGINVQR GQLSPEGMVW LLCGPENSVL AQDKLLLHHD MTQPLNHYFI ENSBTAP00000025402/1-1171 YEPSGINVQR GQLSPEGMVW FLCGPENSVL AQDKLLLHHD MTQPLNHYFI bmy_00636T0/1-1193 YEPRGVNVQR GQLSPEGMVW FLCGPENSVL AQDKLLLHHD MTQPLNHYFI BACU008536/1-1475 YEPRGVNVQR GQLSPEGMVW FLCGPENSVL AQDKLLLHHD MTQPLNHYFI 701 750 ENSP00000260402/1-1185 NSSHNTYLTA GQFSGLSSAE MYRQVLLSGC RCVELDCWKG KPPDEEPIIT ENSTTRP00000000038/1-1184 NSSHNTYLTA GQFSGLSSAE MYRQVLLAGC RCVELDCWKG KPPDEEPIIT ENSBTAP00000025402/1-1171 NSSHNTYLTA GQFSGLSSAE MYRQVLLAGC RCVELDCWKG KPPDEEPIIT bmy_00636T0/1-1193 NSSHNTYLTA GQFSGLSSAE MYRQVLLAGC RCVELDCWKG KPPDEEPIIT BACU008536/1-1475 NSSHNTYLTA GQFSGLSSAE MYRQVLLAGC RCVELDCWKG KPPDEEPIIT 751 800 ENSP00000260402/1-1185 HGFTMTTDIF FKEAIEAIAE SAFKTSPYPI ILSFENHVDS PRQQAKMAEY ENSTTRP00000000038/1-1184 HGFTMTTDIY FKEAIEAIAE SAFKTSPYPV ILSFENHVDS PRQQAKMAEY ENSBTAP00000025402/1-1171 HGFTMTTDIY FKEAIEAIAE SAFKTSPYPV ILSFENHVDS PRQQAKMAEY bmy_00636T0/1-1193 HGFTMTTDIY FKEAIEAIAE SAFKTSPYPV ILSFENHVDS PRQQAKMAEY BACU008536/1-1475 HGFTMTTDIY FKEAIEAIAE SAFKTSPYPV ILSFENHVDS PRQQAKMAEY 801 850 ENSP00000260402/1-1185 CRTIFGDMLL TEPLEKFPLK PGVPLPSPED LRGKILIKNK KNQFSGPTSS ENSTTRP00000000038/1-1184 CRTIFADMLL TEPLEKFPLK PGIPLPSPED LRGKILIKNK KNQFSGPPAP ENSBTAP00000025402/1-1171 CRTMFGDMLL TEPLEKFPLK PGIPLPSPED LRGKILIKNK KNQFSGSASP bmy_00636T0/1-1193 CRTIFGDMLL TEPLEKFPLK PGIPLPSPED LRGKILIKNK KNQFSGPAGP BACU008536/1-1475 CRTIFGDMLL TEPLEKFPLK PGIPLPSPED LRGKILIKNK KKQFSGPAGP 851 900 ENSP00000260402/1-1185 SKDTGGEAEG SSPPSAPAGE GT-------- VWAGEEGTEL EEEEVEEEEE ENSTTRP00000000038/1-1184 SQEPGGEAEG SGPPNVPVGE DT-------- AWDGEEGAEL EEEEV-EEEE ENSBTAP00000025402/1-1171 SKELDGEAEG SSPPNAPVGE DT-------- VWAGEEGAEL EEEEV-EEEE bmy_00636T0/1-1193 SQELGGEAEG SGPPNVPVGE DT-------- VWAGEEGAEL EEEEV-EEEE BACU008536/1-1475 SQEPGGEAEG SGPPNVPVGE DTVLMELYVA VWAGEEGAEL EEEEV-EEEE 901 950 ENSP00000260402/1-1185 EESGNLDEEE IKKMQSDEGT AGLEVTAYEE MSSLVNYIQP TKFVSFEFSA ENSTTRP00000000038/1-1184 EESGNLDEEG MKKMQSDEGT AGLEVTAYKE MSSLVNYVQP TKFISFESSA ENSBTAP00000025402/1-1171 EESGNLDEEE IKKMQSDEGT AGLEVTAYKE MSSLVNYIQP TKFISFEFSA bmy_00636T0/1-1193 EESGSLDEEE MKKMQSDEGT AGLEVTAYKE MSSLVNYVQP TKFISFESSA BACU008536/1-1475 EESGSLDEEE MKKMQSDEGT AGLEVTAYKE MSSLVNYVQP TKFISFESSA 951 1000 ENSP00000260402/1-1185 QKNRSYVISS FTELKAYDLL SKASVQFVDY NKRQMSRIYP KGTRMDSSNY ENSTTRP00000000038/1-1184 QKNRSYVISS FTELKAYDLL SKSSVQFVDY NKRQMSRIYP KGTRMDSSNY ENSBTAP00000025402/1-1171 QKNRSYVISS FTELKAYDLL SKSSVQFVDY NKRQMSRIYP KGTRMDSSNY bmy_00636T0/1-1193 QKNRSYVISS FTELKAYDLL SKSSVQFVDY NKRQMSRIYP KGTRMDSSNY BACU008536/1-1475 QKNRSYVISS FTELKAYDLL SKSSVQFVDY NKRQMSRIYP KGTRMDSSNY 1001 1050 ENSP00000260402/1-1185 MPQMFWNAGC QMVALNFQTM DLPMQQNMAV FEFNGQSGYL LKHEFMRRPD ENSTTRP00000000038/1-1184 MPQMFWNAGC QMVALNFQTM DLPMQQNMAL FEFNGQSGYL LKHEFMRRLD ENSBTAP00000025402/1-1171 MPQMFWNAGC QMVALNFQTM DLPMQQNMAL FEFNGQSGYL LKHEFMRRSD bmy_00636T0/1-1193 MPQMFWNAGC QMVALNFQTM DLPMQQNMAL FEFNGQSGYL LKHEFMRRLD BACU008536/1-1475 MPQMFWNAGC QMVALNFQTM DLPMQQNTAL FEFNGQSGYL LKHEFMRRLD 1051 1100 ENSP00000260402/1-1185 KQFNPFSVDR IDVVVATTLS ITVISGQFLS ERSVRTYVEV ELFGLPGDPK ENSTTRP00000000038/1-1184 KQFNPFSVDR IDVVVATTLS ITVISGQFLS ERSVRTYVEV ELFGLPGDPK ENSBTAP00000025402/1-1171 KQFNPFSVDR IDVVVATTLS ITVISGQFLS ERSVR----- --------PK bmy_00636T0/1-1193 KQFNPFSVDR IDVV------ --VISGQFLS ERSVRTYVEV ELFGLPGDPK BACU008536/1-1475 KQFNPFSVDR IDVV------ --VISGQFLS ERSVRTYVEV ELFGLPGDPK 1101 1150 ENSP00000260402/1-1185 RRYRTKLSPS TNSINPVWKE EPFVFEKILM PELASLRVAV MEEGNKFLGH ENSTTRP00000000038/1-1184 RRYRTKLSPS TNSINPVWKE EPFVFEKILM PELASLRVAV MEDGNKFLGH ENSBTAP00000025402/1-1171 RRYRTKLSPS TNSINPVWKE EPFVFEKILM PELASLRVAV MEEGNKFLGH bmy_00636T0/1-1193 RRYRTKLSPS TNSINPVWKE EPFVFEKILM PELASLRVAV MEDGNKFLGH BACU008536/1-1475 RRYRTKLSPS TNSINPVWKE EPFVFEKILM PELASLRVAV MEDGNKFLGH 1151 1200 ENSP00000260402/1-1185 RIIPINALNS GYHHLCLHSE SNMPLTMPAL FIFLEMKDYI PGAWADLTVA ENSTTRP00000000038/1-1184 RIIPINALNS GYHHLCLHSE SNMPLTMPAL FVFLEMKDYV PDTWAXXXXX ENSBTAP00000025402/1-1171 RIIPISALNS GYHHLCLHNE SNMPLTMPAL FVFLEMKDYV PDTWADLTVA bmy_00636T0/1-1193 RIIPINALNS GYHHLCLHSE SNTPLTMPAL FVFLEMKDYV PDTWADLTVA BACU008536/1-1475 RIIPINALNS GYHHLCLHSE SNMPLTMPAL FVFLEMKDYV PDTWADLTVA 1201 1250 ENSP00000260402/1-1185 LANPIKFFSA HDTKSVKLKE AMGGLPEKPF PLASPVASQV NGALAPTSNG ENSTTRP00000000038/1-1184 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000025402/1-1171 LANPIKFFSA HDKKAVKLKE AMGGQSESPF PLGNHPASQI NGASAPTSNG bmy_00636T0/1-1193 LANPIKFFSA HDKKSVKLKE AMGGLPENPF PLGSPVARQV NGASAPTSKG BACU008536/1-1475 LANPIKFFSA HDKKSVKLKE AMGGLPENPF SLGSPVARQV NGASAPTSNG 1251 1300 ENSP00000260402/1-1185 SPAARAG--- ---------- ---------- ---------- ---------- ENSTTRP00000000038/1-1184 XXXXXX---- ---------- ---------- ---------- ---------- ENSBTAP00000025402/1-1171 SAAAGA---- ---------- ---------- ---------- ---------- bmy_00636T0/1-1193 SAGTHCGVPP PTGRVSTSPL HRERLHVKPR AGQCAAWGPH RHPREAGERP BACU008536/1-1475 SAGTHC---- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000260402/1-1185 ---------- --------AR EEAMKEAAEP RTASLEELRE LKGVVKLQRR ENSTTRP00000000038/1-1184 ---------- ---------- XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000025402/1-1171 ---------- --------KR EEATKETAEP QTASLEELRE LKGVVKLQRR bmy_00636T0/1-1193 SRGHRRASPL ALAAAGAKAR EEATKEAAEP RTASLEELRE LKGVVKLQRR BACU008536/1-1475 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000260402/1-1185 HEKELRELER RGARRWEELL QRGAAQLAEL GPPGVGGVGA C---KLGPGK ENSTTRP00000000038/1-1184 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000025402/1-1171 QEKELRELGR RGVRRWEELL QRGAAQLAGL GPPGAGGSGG CRGRKLGPGK bmy_00636T0/1-1193 HEKELRELER RGARRWEELL QRGAAQRAEF GPPGAGGGGE GRGRKLGPGK BACU008536/1-1475 ---------- ---------- --------GV PPP------- -----TGRVS 1401 1450 ENSP00000260402/1-1185 GSRKKRSLPR EESAGAAPGE GPEGVDGRVR ELKDRLELEL LRQGEEQYEC ENSTTRP00000000038/1-1184 XXXKNRTPPG EDPAGSAPAE GPEGAGAHLR ELRDRLELEL LQQGEEQCEC ENSBTAP00000025402/1-1171 GSRKKRTLPG EDTAGAASAE GPEGEDVRLR ELRDRLELEL LQLGEEQCEC bmy_00636T0/1-1193 GSRKKRTPPG EDPAGAAPAE GPEGADPRLR ELRDRLELEL LQQGEEQCEC BACU008536/1-1475 TSPLHRTPPG EDPAGAAPAE GPEGADARLG ELRDRLELEL LQQGEEQCEC 1451 1500 ENSP00000260402/1-1185 VLKRKEQHVA EQISKMMELA REKQAAELKA LKETSENDTK EMKKKLETKR ENSTTRP00000000038/1-1184 VWRCRAQQVA EQMTKMMELA REKQAAELKT LKETLETDTK EVKKKLEAKR ENSBTAP00000025402/1-1171 VMKLKEQHAA QQMTKMMELA REKQAAERKT LKETLEIDTK EMKKKLEAKR bmy_00636T0/1-1193 VLRRREQQVA EQMTKMMELA REKQAAELKT LKETLETDTK EMKKKLEAKR BACU008536/1-1475 VLRRREQQVA EQMTKMMELA REKQAAELKT LQETLETDTK EVKKKLEAKR 1501 1550 ENSP00000260402/1-1185 LERIQGMTKV TTDKMAQERL KREINNSHIQ EVVQVIKQMT ENLERHQEKL ENSTTRP00000000038/1-1184 LDRIQAMMKV TTDKMAQERL KREINNSHIQ EVVQVLKQMT ENLERHQEKL ENSBTAP00000025402/1-1171 LERIQAMMKV TTDKMAQERL KREINNSHIQ EVVQVIKQMT ENLERHQEKL bmy_00636T0/1-1193 LERIQAMMKV TTDKMAQERL KREINNSHIQ EVVQVIKQ-- ---------- BACU008536/1-1475 LERIQAMMKV TTDKMAQERL KREINNSHIQ EVVQVIKQMT DNLERHQEKL 1551 1600 ENSP00000260402/1-1185 EEKQAACLEQ IREMEKQ--- ---------- ---------- --------FQ ENSTTRP00000000038/1-1184 EEKQAACLEQ IREMEKQ--- ---------- ---------- --------FQ ENSBTAP00000025402/1-1171 EEKQAACLEQ IQEMEKQ--- ---------- ---------- --------FQ bmy_00636T0/1-1193 ---------- ---------- ---------- ---------- --------FQ BACU008536/1-1475 EEKQAVCLEQ IREMEKQVTG GTTTLAHSRA GLAPGCKGTQ LRGAASQEFQ 1601 1650 ENSP00000260402/1-1185 KEALAEYEAR MKGLEAEVKE SVRACLRTCF PSEAKDKPER ACECPPELCE ENSTTRP00000000038/1-1184 QEALAQYEAK MKGLEVEVKE SVRTCLRACL PSAEEDKPER PCRVSRELCE ENSBTAP00000025402/1-1171 QEAMAEYEAK MKGLEMEVKE SVRTCLRACF PSEEEDKPER PCVVSRELCE bmy_00636T0/1-1193 QEALAEYEAK MKGLEVEVKE SVRTCLRACL PSAEEDKPER PCRVSRGLCE BACU008536/1-1475 QEALAEYEAK MKGLEVEVKE SVRTCLRACL PSAEEDKPER PCRVSRGLCE 1651 1700 ENSP00000260402/1-1185 QDPLIAKADA QESRL ENSTTRP00000000038/1-1184 QDALTEKTDA EETLL ENSBTAP00000025402/1-1171 QDTLTEQAET QESHL bmy_00636T0/1-1193 QDALTEKTDA QESLL BACU008536/1-1475 QDALTEKTDA QESLL