KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:26:02 2014 Check: 00 .. Name: ENSBTAP00000025404/1-326 Len: 349 Check: 9762 Weight: 1.00 Name: ENSTTRP00000014683/1-305 Len: 349 Check: 53 Weight: 1.00 Name: bmy_02911T0/1-298 Len: 349 Check: 7733 Weight: 1.00 Name: BACU013953/1-273 Len: 349 Check: 7079 Weight: 1.00 // 1 50 ENSBTAP00000025404/1-326 MGVLRAGLCP GLTQDMVQLL QSRGIKTVVD LVCADLEEVA QKCGLSYKAL ENSTTRP00000014683/1-305 MGVLRAGLCP GLTQDMVQLL RSRGIKTVVD LV-------- --------AL bmy_02911T0/1-298 ---------- ---------- -------VVD LVSADLEEVA QKCGLSYKAL BACU013953/1-273 MGVLRAGLCP GLTQDVVQLL RSRGIKTVVD LVSADLEEVA QKCGLSYKAL 51 100 ENSBTAP00000025404/1-326 VALRRVLLAQ FSAFPFNGAD LYEELKTSTA ILSTGIGSLD KLLDAGLYTG ENSTTRP00000014683/1-305 VAQRRVLLAQ FSAFPFNGAD LYEELKTSTA ILSTGIARKR P-------SG bmy_02911T0/1-298 VALRRVLLAQ FSAFPLNGAD LYEELKTSTA ILSTGIASLD KLLDAGLYTG BACU013953/1-273 VALRRVLLAQ FSAFPFNGAD LYEELKTSTA ILSTGIASLD KLLDAGLYTG 101 150 ENSBTAP00000025404/1-326 EVTEIVGAPG SGKTQVCLCV AAHVAHGLQQ NVLYIDSNGG LTASRILQLL ENSTTRP00000014683/1-305 NVTEIVGGPG SGKTQVCLRV AANVAHGLQQ NVLYIDSTGG LTASRILQLL bmy_02911T0/1-298 EVTEIVGGPG SGKTQVCLCV AANVAHGLQQ NILYIDSNGG LTASRILQLL BACU013953/1-273 EVTEIVGGPG SGKTQVCLCV AAHVAHGLQQ NVLYIDSNGG LTASRILQLL 151 200 ENSBTAP00000025404/1-326 QARTPDEEEQ ---------- ----AGALQR IQVVRAFDIF QMLDVLQDLR ENSTTRP00000014683/1-305 QARTPEEEEQ ---------- ----AGALQR IQVVRAFDIF QMLDVLQDLR bmy_02911T0/1-298 QARTPDEGEQ VESRRAGFLG GSDTAGALQR IQVVRAFDIF QMLDVLQDLR BACU013953/1-273 QARTPDEGEQ ---------- ----AGALQR IQVVRAFDIF QMLDVLQDLR 201 250 ENSBTAP00000025404/1-326 GAVSQQVSSS SGTLKVVVVD SVAAVVAPLL GGQQREGLAL MMQLARELKT ENSTTRP00000014683/1-305 GAVSQQVSSS SGTLKVVVVD SVTAVVAPLL GGQQREGLAL MMQLARELKT bmy_02911T0/1-298 GAVSQQVSSS SGTLKVVVVD SVTAVVAPLL GGQQREGLAL MMQLARELKT BACU013953/1-273 GAVSQQVSSS SGTLKVVVVD SVTAVVAPLL GGQQREGLAL MMQLARELKT 251 300 ENSBTAP00000025404/1-326 LARDLSVAVL VTNHMTRD-R DSGQLKPALG RSWSF----V PSTRLLLDST ENSTTRP00000014683/1-305 LARDLSVALV VTNHMTRD-R DSGQLKPALG RSWSF----V PSTRLLLDTG bmy_02911T0/1-298 LARDLSVALV VRKCLIEELL DTETLQPKRL PTWAAQLKNS PSPPVLFQ-- BACU013953/1-273 LARDLSVALV ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000025404/1-326 QSSGSLGSWR VVCLTKSPRL PTGCQETVDL GSLGT----P AFQGDHKGH ENSTTRP00000014683/1-305 QGAGASGSWR MACLTKSPRL PTGFQEMVDI GTWGTPVQSP TLQGDHM-- bmy_02911T0/1-298 ---------- ---------- PTGFQEMVDI GTWGTPVQSP TLQGDHM-- BACU013953/1-273 ---------- ---------- PTGFQEMVDI GTWGTPVQSP TLQGDHM--