KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:03 2014 Check: 00 .. Name: ENSP00000262319/1-837 Len: 1002 Check: 8425 Weight: 1.00 Name: ENSBTAP00000025412/1-828 Len: 1002 Check: 2218 Weight: 1.00 Name: ENSTTRP00000011376/1-824 Len: 1002 Check: 9777 Weight: 1.00 Name: bmy_01918T0/1-987 Len: 1002 Check: 8060 Weight: 1.00 Name: BACU019891/1-793 Len: 1002 Check: 1948 Weight: 1.00 // 1 50 ENSP00000262319/1-837 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025412/1-828 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011376/1-824 ---------- ---------- ---------- ---------- ---------- bmy_01918T0/1-987 MSWAANRAQS GASGAVANRR RVGIGGASGV AARLGDSADP AGARLPVTAA BACU019891/1-793 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000262319/1-837 ---------- ---------- ----MEPAPS EVRLAVREAI HALSSSEDGG ENSBTAP00000025412/1-828 ---------- ---------- ----MDPVAS AVRLAVQEAV HILSSSEDGG ENSTTRP00000011376/1-824 ---------- ---------- ----MDPEVS AVRLTVWEAV HILSSSEDGG bmy_01918T0/1-987 RPEVPARPDT PSRPPRTAAR RATRMDPEVS AVRLTVWEAV HILSSSEDGG BACU019891/1-793 ---------- ---------- ----MDPEVS AVRLTVWEAV HILSSSEDGG 101 150 ENSP00000262319/1-837 HIFCTLESLK RYLGEMEPPA LPREKEEFAS AHFSPVLRCL ASRLSPAWLE ENSBTAP00000025412/1-828 HIISTLQSLR RYLGETETQA PPEEQEEFSR THFSTILRCL VGKLSPDWLD ENSTTRP00000011376/1-824 RIFCTLGSLK RYLGATENPA LPEEQEEFVR IHFSTFLRCL VSKLSPDWLE bmy_01918T0/1-987 RIFCTLGSLK RYLGETENPA LPEEQEEFAR IHFSTFLRCL VGKLSPDWLE BACU019891/1-793 RIFCTLGSLK RYLGETENSA LPEEQEEFAR IHFSTFLRCL VGKLSPDWLE 151 200 ENSP00000262319/1-837 LLPHGRLEEL WASFFLEGPA DQAFLVLMET IEGAAGPSFR LMKMARLLAR ENSBTAP00000025412/1-828 LLPDGQLEEL WASFFLEGPA DQAFLVLMES IEGAASPSFR LMKMARLLAR ENSTTRP00000011376/1-824 LLPDGQMEEL WASFFLEGPA DQAFLVLMES IEGAASPSFC LMKMAQLLAR bmy_01918T0/1-987 LLPDGQMEEL WASFFLEGPA DQAFLVLMES IEGAASPSFR LMKMARLLAR BACU019891/1-793 LLPDGQMEEL WASFFLEGPA DQAFLVLMES IEGAASPSFR LMKMARLLAR 201 250 ENSP00000262319/1-837 FLREGRLAVL MEAQCRQQTQ PGFILLRETL LGKVVALPDH LGNRLQQENL ENSBTAP00000025412/1-828 FLSAGRMAAV MEGQCGQQAG PASRLLQETL LTRVVGLPDH LGNRLQRETL ENSTTRP00000011376/1-824 FLSVGRMAAV MEGQCRQQAG PAFPLLQETL LTKVVGLPDR LGNRLQRENL bmy_01918T0/1-987 FLSMGRMAAV MEGQCRQQAG PAFPLLQETL LTKVVGLPDL LGNRLQRENL BACU019891/1-793 FLSVGRMAAV MEGQCQQQAG PAFPLLQETL LTKVVGLPDL LGNRLQWENL 251 300 ENSP00000262319/1-837 AEFFPQNYFR LLGEEVVRVL QAVVDSLQGG LDSSVSFVSQ VLGKACVHGR ENSBTAP00000025412/1-828 AAFFPQNYFP LLGEEVLRVL QAVVDSLRGG LDCSVSFLSQ VLGKACVHGR ENSTTRP00000011376/1-824 ATFLPQNYFP LLGEEVLRVL QVVVDSLRGG LDCSVSFLSQ VLGKACVHGR bmy_01918T0/1-987 ATFFPQNYFP LLGEEVLRVL QVVVDSLRGG LDCSVSFLSQ VLGKACVHGR BACU019891/1-793 ATFFPQNYFP LLGEEVLRVL QVVVDSLRGG LDCSVSFLSQ VLGKACVHGR 301 350 ENSP00000262319/1-837 QQEILGVLVP RLAALTQGSY LHQRVCWRLV EQVPDRAMEA VLTGLVEAAL ENSBTAP00000025412/1-828 QKEILGVLVP RLTVLTQGNC LWQRVCWRLV ECVPDRAMEA VLKGLVEAAP ENSTTRP00000011376/1-824 QKEVLGVLVP RLTVLTQGSC LWQRVCWCLV ERVPDWAMEA VLKGFVEAAP bmy_01918T0/1-987 QKEVLGVLVP QLTVLTQGSC LWQRVCWCLV ERVPDWAMEA VLKGFVEAAP BACU019891/1-793 QKEVLGVLVP RLTVLTQGSC LWQRVCWCLV ERVPDWAMEA VLKGFVEAAP 351 400 ENSP00000262319/1-837 GPEVLSRLLG NLVVKNKKAQ FVMTQKLLFL QSRLT----- ---------- ENSBTAP00000025412/1-828 GPEVLSRLLG NLVTKSKKAQ FVMTQKLLFL QYSCS----- ---------- ENSTTRP00000011376/1-824 GPEVLSRLLG NVVTKSKKAQ FVMTRKLLFL QYSCT----- ---------- bmy_01918T0/1-987 GPEVLSRLLG NLVTKSKKAQ FVMTRKLLFL QYSCTVRVPA GGGSCSRRGW BACU019891/1-793 GPEVLSRLLG NLVTKSKKAQ FVMTRKLLFL QYSCT----- ---------- 401 450 ENSP00000262319/1-837 ---------- ---------- ---------- ---------- --TPMLQSLL ENSBTAP00000025412/1-828 ---------- ---------- ---------- ---------- --MPMLQSLL ENSTTRP00000011376/1-824 ---------- ---------- ---------- ---------- --MPMLQSLL bmy_01918T0/1-987 SSARLPRHVA VLQPRPVPPL GSPGRAGGVC LADGERMLAL SQMPMLQSLL BACU019891/1-793 ---------- ---------- ---------- ---------- --MPMLQSLL 451 500 ENSP00000262319/1-837 GHLAMDSQRR PLLLQVLKEL LETWGSSSAI RHTPLPQQRH VSKAVLICLA ENSBTAP00000025412/1-828 GYLAMDSQRR PLLVQALKEL LETWGSSSAI RHTPLEQQRY VSKALLICLT ENSTTRP00000011376/1-824 GYLAMDSQRR SLLMQALKEL LETWGSSSAI RHVPLVQQRY VSKAILICLA bmy_01918T0/1-987 GYLAMDSQRR SLLMQALKEL LETWGSSSAI HHVPLVQQRY VSKAILICLA BACU019891/1-793 GYLAMDSQRR SLLMQALKEL LETWGSSSAI RHVPLVQQCY VSKAILICLA 501 550 ENSP00000262319/1-837 QLGEPELRDS RD-------- ---------- ---------- ---ELLASMM ENSBTAP00000025412/1-828 HLGEAELRAS RD-------- ---------- ---------- ---ELLASLM ENSTTRP00000011376/1-824 HLGEAELRDS RD-------- ---------- ---------- ---ELLASLM bmy_01918T0/1-987 HLGEAELRDS QDGEHAVGAP SPLPPPRSPI PLPQLSPCAS VLPELLASLM BACU019891/1-793 HLGEAELRDS QD-------- ---------- ---------- ---ELLASLM 551 600 ENSP00000262319/1-837 AGVKCRLDSS LPPVRRLGMI VAEVVSARIH PEGPPLKFQY EEDELSLELL ENSBTAP00000025412/1-828 EGVKSRLDSS LPPVRRLGMI VAEVASARLH PEGPPLKFQY EEDELTREML ENSTTRP00000011376/1-824 EGVKSRLDSS LPPVRRLGMI VAEVASARIH PEGPPLKFQY EEDELTREML bmy_01918T0/1-987 EGVKSRLDSN LPPVRRLGMI VAEVASARIH PEGPPLKFQY EEDELTREML BACU019891/1-793 EGVKSRLDSS LPPVRRLGMI VAEVASARIH PEGPPLKFQY EEDELTREML 601 650 ENSP00000262319/1-837 ALASPQPAGD GASEAG---T SLVPATAEPP AETPAEIVDG GVPQAQLAGS ENSBTAP00000025412/1-828 ALAVPRPAAD GPSEAGFQSP PVAPVSGESP DQ---ETVDS GGPQAGWEGS ENSTTRP00000011376/1-824 ALAMPRPAAD GPSEAG---P SFAPVSGETP A----ETVDR SGPQTGPEGS bmy_01918T0/1-987 ALAMPRPAAD GPSEAG---P SFAPVSGETP DR---ETVDR SGPQAGPEGS BACU019891/1-793 ALAMPQPTAD GPSEAG---P SFAPVSGETP DR---ETVDR SGPQVGPEGS 651 700 ENSP00000262319/1-837 DSDLDSDDEF VPYDMSGDRE LKSSKAPAYV RDCVEALTTS EDIERWEAAL ENSBTAP00000025412/1-828 DSELDSDDEL VPYDMSGDGE QRGSKTPAYV RDCLEALTAS EDWERWEEAL ENSTTRP00000011376/1-824 DSELDSDDEF VPYDMSVDRE QRSSKAPSYV RGCLEALTGS EDWERWEAAL bmy_01918T0/1-987 DSELDSDDEF VPYDMSVDRE QRSSKAPSYV RGCLEALTGS EDWERWEAAL BACU019891/1-793 DSELDSDDEF VPYDMSVDRE QRSSKAPSYV RGCLEALTGS EDWERWEAAL 701 750 ENSP00000262319/1-837 RALEGLVYRS PTATREVSVE LAKVLLHLEE KTCVVGFAGL RQRALVAVTV ENSBTAP00000025412/1-828 RALEGLVLKS PAATREVSLE LAKVLLHLEE KTAVAGFERL RQRALVAVTV ENSTTRP00000011376/1-824 WALEGLIFRS PAATQEVSVE LAKVLLHLEE KTAVVGFEGL RQRALVALTV bmy_01918T0/1-987 RALEGLIFRS PAATQEVSVE LAKVLLHLEE KTAVAGFEGL RQRALVAVTV BACU019891/1-793 RALEGLIFRS PAATQEVSVE LAKVLLHLEE KTAVAGFEGL RQRTLVAVTV 751 800 ENSP00000262319/1-837 TDPAPVADYL TSQFYALNYS LRQRMDILDV LTLAAQELSR PGCLGRTPQP ENSBTAP00000025412/1-828 TDPARVAEYL AVQFYALNYS LRQRMDILDV LALAAQELSR PGRLGKAAQR ENSTTRP00000011376/1-824 TDPARVAEYL TTQFYALNYS LRQRMDILDV LTLAAQELSR LGRLGKAPQR bmy_01918T0/1-987 TDPARVAEYL TAQFYALNYS LRQRMDILDV LTLAAQELSR PGRLGKAPQR BACU019891/1-793 TDPARVAEYL TVQFYALNYS LRQRMDILDV LTLAAQELSR PGRLGKAPQR 801 850 ENSP00000262319/1-837 GSPSPNTPCL PEAAVSQPGS AVASDWRVVV EERIRSKTQR LSKGGPRQGP ENSBTAP00000025412/1-828 GSPGPG---- -----SQPSG AAVPAWKAVV EERVRRKTRR FCKGSTGRAA ENSTTRP00000011376/1-824 GSPDPG---- -----SQPGG AVVPAWRAVV EERVRRKTRR FSKXXXXXXX bmy_01918T0/1-987 GSPDPS---- -----SQPGG AVVPAWRAVV EERVRRKTRW FSKGSAGQAP BACU019891/1-793 GSPDPG---- -----SQPGG AVVPAWRAVV EERVRRKTRW FSKVSQALGW 851 900 ENSP00000262319/1-837 AGSPSRFNSV AGHFFFPLLQ RFDRPLVTFD LLGEDQLVLG RLAHTLGALM ENSBTAP00000025412/1-828 AAGPNEFNAV AGYFFFPLLQ RFDRPVVTFD LLGDDQLVLG RLAHTLGALM ENSTTRP00000011376/1-824 XXXXXXXXXX XXXXXXXXXX XXXXPLVTFD LLGDDQLVLG RLAHTLGALM bmy_01918T0/1-987 AVGPNEFNSV AGYFFFPLLQ HFDRPLVTFD LLGGDQLVLG RLAHTLGALM BACU019891/1-793 PLGRDFCPEG TATTVSCEGR VFGWPLVTFD LLGGDQLVLG RLAHTLGALM 901 950 ENSP00000262319/1-837 CLAVNTTVAV AMGKALLEFV WALRFHIDAY VRQGLLSAVS SVLLSLPAAR ENSBTAP00000025412/1-828 YLAVNTAVAV PMGKALLEFV WALRFHGDAY VRRGLLSAVS SVLLSVPAEW ENSTTRP00000011376/1-824 YLAVNTTVAV PMGKALLEFV WALRFHGDAY VRQGLLSAVS AVLLSVPAER bmy_01918T0/1-987 YLAVNTTVAV PMGKALLEFV WALRFHGDAY VRRGLLSAVS AVLLSVPAER BACU019891/1-793 YLAVNTTVAV PMGKALLEFV WALRFHGDAY VRRGLLSAVS AVLLSVPAER 951 1000 ENSP00000262319/1-837 LLEDLMDELL EARSWLADVA EKDPDEDCRT LALRALLLLQ RLKNRLLPPA ENSBTAP00000025412/1-828 LLADLPDELL EARSWLADVA EQDADEDCRL LAVKALLLLE KLRDRLLPLS ENSTTRP00000011376/1-824 LLADLLDELL EARSWLGDVA EKDPDKDCRL LAVKALLLLE KLRDKLLPLS bmy_01918T0/1-987 LLADLLDELL EARSWLGDVA EKDPDEDCRL LAVKALLLLE KLRDKLLPLS BACU019891/1-793 LLADLLDELL EARSWLGG-- ------DC-- ---------- ---------- 1001 1050 ENSP00000262319/1-837 SP ENSBTAP00000025412/1-828 SP ENSTTRP00000011376/1-824 SP bmy_01918T0/1-987 SP BACU019891/1-793 --