KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:09 2014 Check: 00 .. Name: BACU007093/1-733 Len: 817 Check: 1899 Weight: 1.00 Name: ENSP00000468678/1-793 Len: 817 Check: 3134 Weight: 1.00 Name: ENSBTAP00000025419/1-792 Len: 817 Check: 1783 Weight: 1.00 Name: bmy_15653T0/1-784 Len: 817 Check: 1960 Weight: 1.00 Name: ENSTTRP00000011068/1-783 Len: 817 Check: 7819 Weight: 1.00 // 1 50 BACU007093/1-733 MPLPGGLWWL LCCRRGFTLL HRDYGDGELS GDGDEDEDEE TFELRTPSPA ENSP00000468678/1-793 MPLPGGLWWL LCCRRGFTLL HRDYGDGELS GDGDEDEDEE TFELRTPSPA ENSBTAP00000025419/1-792 MPLPGGLWWL LCCRRGFTLL HRDYGDGELS GDGDEDEDEE TFELRTPSPA bmy_15653T0/1-784 MPLPGGLWWL LCCRRGFTLL HRDYGDGELS GDGDEDEDEE TFELRTPSPA ENSTTRP00000011068/1-783 ---------L LCCRRGFTLL HRDYGDGELS GDGDEDEDEE TFELRTPSPA 51 100 BACU007093/1-733 GGGRGPLDVT LTQPVRSGPV SDRLQSWEET RSLIPEKGPS EDDPDVVVKG ENSP00000468678/1-793 GGGRGPLEVT LTQPVRSGPV SNRLQSWEET WSLIPEKGLP EDDPDIVVKG ENSBTAP00000025419/1-792 GGGRGPLDVT LTQPMRSGPV SDRLQSWEET RSLIPEKGPS EDDPDVVVKG bmy_15653T0/1-784 GGGRGPLDVT LTQPVRSGPV SDRLQSWEET RSLIPEKGPS EDDPDVVVKG ENSTTRP00000011068/1-783 GGGRGPLDVT LTQPGRSGPV SDRLQSWEET RSLIPEKGPS EDDPDVVVKG 101 150 BACU007093/1-733 WLYREPRGGG ARPWLPPRRA WFVLTRDSLD QFSSSGKGAR RLGSLVLTSL ENSP00000468678/1-793 WLYREPRGGG ARPWLPPRRA WFVLTRDSLD QFSSSGKGAR RLGSLVLTSL ENSBTAP00000025419/1-792 WLYREPRGGG ARPWLPPRRA WFVLTRDSLD QFSSSGKGAR RLGSLVLTSL bmy_15653T0/1-784 WLYREPRGGG ARPWLPPRRA WFVLTRDSLD QFSSSGKGAR RLGSLVLTSL ENSTTRP00000011068/1-783 WLYREPRGGG ARPWLPPRRA WFVLTRDSLD QFSSSGKGAR RLGSLVLTSL 151 200 BACU007093/1-733 CSVTGPERRP KETGLWSVTV SGRKHSVRLC SPRQAEAERW GVALREVIAS ENSP00000468678/1-793 CSVTGPERRR KETGLWSVTV SGRKHSVRLC SPRQAEAERW GVALREVIAS ENSBTAP00000025419/1-792 CSVSGPERRP KETGLWSVTV SGRKHSVRLC SPRQSEAECW GVALREVIAS bmy_15653T0/1-784 CSVTGPERRP KETGLWSVTV SGRKHSVRLC SPRQAEAERW GVALREVIAS ENSTTRP00000011068/1-783 CSVTGPERRP KETGLWSVTV SGRKHSVRLC SPRQAEAERW GVALREVIAS 201 250 BACU007093/1-733 KAPLETPTQL LLRDIQ---- ---------- --------ES CGDPEAVALI ENSP00000468678/1-793 KAPLETPTQL LLRDIQ---- ---------- --------ES CGDPEAVALI ENSBTAP00000025419/1-792 KAPLETPTQL LLRDIQ---- ---------- --------ES RGDPEAVALI bmy_15653T0/1-784 KAPLETPTQL LLRDIQVRGR ELHGERGGWW THKLSGFMES CGDPEAVALI ENSTTRP00000011068/1-783 MAPLETPTQL LLRDIQ---- ---------- --------ES YGDPEAVALI 251 300 BACU007093/1-733 YRRNPILRHT SGALYAPLLP LPYGVSAPGP GYAPLREEAV RLFLALQALE ENSP00000468678/1-793 YLRNPILRHT SGALYAPLLP LPYGVSAPGP GYAPLREEAV RLFLALQALE ENSBTAP00000025419/1-792 YRRNPILRHT SGALYAPLLP LPYGVTAPGP GYAPLREEAV RLFLALQALE bmy_15653T0/1-784 YRRNPILRHT S--------- ---------P GYAPLREEAV RLFLALQALE ENSTTRP00000011068/1-783 YRRNPILRHT SGALYAPLLP LPYGVSAPGP GYAPLREEAV RLFLALQALE 301 350 BACU007093/1-733 GARRPGPLMQ GVLQTCRDLP ALRDELFLQL AKQTSGPAGP PGPPATQDPA ENSP00000468678/1-793 GARRPGPLMQ GVLQTCRDLP ALRDELFLQL AKQTSGPAGP PGLPATQDPA ENSBTAP00000025419/1-792 GARRPGPLMQ GVLQTCRDLP ALRDELFLQL AKQTSGPAGP PGPPATQDPA bmy_15653T0/1-784 GARRPGPLMQ GVLQTCRDLP ALRDELFLQL AKQTSGPAGP PGPPATQDPA ENSTTRP00000011068/1-783 GARRPGPLMQ GVLQTCRDLP ALRDELFLQL AKQTSGPAGP PGPPATQDPA 351 400 BACU007093/1-733 ALRYWQLLTC MSCTFRPGGP VRGHLLGHLE RTEQALPDSE LAEYARFIRK ENSP00000468678/1-793 ALRYWQLLTC MSCTFRPGGA VRGHLLGHLE RTEQALPDSE LAEYARFIRK ENSBTAP00000025419/1-792 ALRYWQLLTC MSCTFRPGGA VRGHLLGHLE RTEQALPDSE LAEYARFIRR bmy_15653T0/1-784 ALRYWQLLTC MSCTFRPGGP VRGHLLGHLE RTEQALPDSE LAEYARFIRK ENSTTRP00000011068/1-783 ALRYWQLLTC MSCTFRPGGP VRGHLLGHLE RTEQALPDSE LAEYARFIRK 401 450 BACU007093/1-733 ALGRTRGREL VPSLAEISAL SRRQELLCTV HCPGAGACPV AIDSHTTAGD ENSP00000468678/1-793 ALGRTRGREL VPSLAEISAL SQRQELLCTV HCPGAGACAV AIDSHTTAGE ENSBTAP00000025419/1-792 ALGRTRGREL VPSLAEISAL SRRQELLCTV HCPGAGACPV AIDSHTTAGE bmy_15653T0/1-784 ALGRTRGREL VPSLAEISAL SRRQELLCTV HCPGAGACPV AIDSHTTAGE ENSTTRP00000011068/1-783 ALGRTRGREL VPSLAEISAL SRRQELLCTV HCPGGGACPV AIDSHTTAGE 451 500 BACU007093/1-733 VARELVGRLG LTRSRNAFAL YEQRGAQERA LAGGTLVADV LTRFENLAAE ENSP00000468678/1-793 VARELVGRLG LARSRNAFAL YEQRGAQERA LAGGTLVADV LTRFENLAAE ENSBTAP00000025419/1-792 VARELVGRLG LTRSRNTFAL YEQRGAQERA LAGGTLVADV LTRFENLAAE bmy_15653T0/1-784 VARELVGRLG LTRSRNAFAL YEQRGAQERA LAGGTLVADV LTRFENLAAE ENSTTRP00000011068/1-783 VARELVGRLG LTRSRNAFAL YEQRGPQERA LAGGTLVADV LTRFENLAVE 501 550 BACU007093/1-733 EAGLEDPPDS SWRLCLRLHG PLHPEGLSPD GHELPFLFEQ ---------- ENSP00000468678/1-793 EAGLEDSPDS GWRLCLRLHG PLHPEGLSPD GHELPFLFEQ AHALLLRGRP ENSBTAP00000025419/1-792 EAGLEDPPDT GWRLCLRLHG PLHPEGLSPD GHELPFLFEQ AHALLLRGRP bmy_15653T0/1-784 EAGLEDPPDS SWRLCLRLHG PLHPEGLSPD GHELPFLFEQ AHALLLRGRP ENSTTRP00000011068/1-783 EAGLEDPPDS GWRLCLRLHG PLHPEGLSSD GHELPFLFEQ AQALLLRGRP 551 600 BACU007093/1-733 ---------- --VRISGIHA QRRPASLNPS LSGPSHFAVM ATPGEAVLEP ENSP00000468678/1-793 PPPDDTLRAL AALRLQSLQR DFSPRVPLPR LD--RLLPPP APPREDPPRP ENSBTAP00000025419/1-792 PPPDDTLRAL AALRLQSLHR DFPPRAPLPR LD--RLLPTP ARPREDPPRP bmy_15653T0/1-784 ALPDDTLRAQ AALRLRSLHR DFSPRAPLPR LD--RLLPTP VPPREDPSRP ENSTTRP00000011068/1-783 SPPDDTLRAQ AALRLRSLHR DFSPRAPLPR LD--RLLPTS APPREDPLRP 601 650 BACU007093/1-733 RPQVPH---- -------PEV SSRR------ ---------- ---------- ENSP00000468678/1-793 TPRPPPSAAL LAGALWSPGL AKRRAERARR GGAGRTAGSI AREGGGGAGT ENSBTAP00000025419/1-792 VPRPPPSAAL LAGAIWSPSL AKRRAERARH GGAGRTAGSV AREGGGGAGR bmy_15653T0/1-784 VPRPPRSAAL LAGAIWSPGL AKRRAERARR GGAGRPAGSV AREGGGGAGT ENSTTRP00000011068/1-783 VPRPPRSAAL LAGAIWSPAL AKRRAERARR GGAGRTAGSV AREGGGGAGT 651 700 BACU007093/1-733 --AVLGGWKR LRGMGRAEAM AAYLALAAQC PGFGAARYDV LELSTEPGGG ENSP00000468678/1-793 AAAVLGGWKR LRGMGRAEAM AAYLALAAQC PGFGAARYDV LELSTEPGRG ENSBTAP00000025419/1-792 AAAVLGGWKR LRGMGRAEAM AAYLALAAQC PGFGAARYDV LELSTEPGGG bmy_15653T0/1-784 AAAVLGGWKR LRGMGRAEAM AAYLALAAQC PGFGAARYDV LELSTEPGGG ENSTTRP00000011068/1-783 AAAVLGGWKR LRGMGRAEAM AAYLALAAQC PGFGAARYDV LELSTEPGGG 701 750 BACU007093/1-733 APQKLCLGLG AKAMSLSRPG ETQPVHSVSY GRVAACQLMG PHTLALRVGE ENSP00000468678/1-793 APQKLCLGLG AKAMSLSRPG ETEPIHSVSY GHVAACQLMG PHTLALRVGE ENSBTAP00000025419/1-792 APQKLCLGLG AKAMSLSRPG ETEPIHSVSY GRVAACQLMG PHTLALRVGE bmy_15653T0/1-784 APQKLCLGLG AKAMSLSRPG ETQPVHSVSY GRVAACQLMG PHTLALR--- ENSTTRP00000011068/1-783 APQKLCLGLG AKAMSLSRPG ETQPVHSVSY GRVAACQLMG PHTLALRVGE 751 800 BACU007093/1-733 SQLLLQSPQV EEIMQLVNAY LANPSPERP- SSSPPPCQDL PDTSPPSQHP ENSP00000468678/1-793 SQLLLQSPQV EEIMQLVNAY LANPSPERPC SSSSPPCQDL PDTSPPSQRP ENSBTAP00000025419/1-792 SQLLLQSPQV EEIVQLVNAY LANPSPERP- SSSPPPCQDL PDTSPPSQHP bmy_15653T0/1-784 ---------V EEIMQLVNAY LANPSPERP- SSSPPPCQDL PDTSPPSQHP ENSTTRP00000011068/1-783 SQLLLQSPQV EEIMQLVNAY LANPSPARP- SSSPPPCQDL PDTSPPSQHP 801 850 BACU007093/1-733 GLDEPQGQSG CLGQLQD ENSP00000468678/1-793 GLDEPQGQSG CLGQLQD ENSBTAP00000025419/1-792 GLDEPQGQSG CLGQLQD bmy_15653T0/1-784 GLDEPQGQSG CLGQLQD ENSTTRP00000011068/1-783 GLDEPQGQSG CLGQLQD