KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:10 2014 Check: 00 .. Name: ENSP00000413572/1-485 Len: 502 Check: 96 Weight: 1.00 Name: ENSTTRP00000014702/1-430 Len: 502 Check: 8473 Weight: 1.00 Name: ENSBTAP00000025423/1-486 Len: 502 Check: 2715 Weight: 1.00 Name: bmy_02909T0/1-475 Len: 502 Check: 6991 Weight: 1.00 Name: BACU020332/1-421 Len: 502 Check: 231 Weight: 1.00 // 1 50 ENSP00000413572/1-485 ----MAAAVP DEAVARDVQR LLVQFQDEGG QLLGSPFDVP VDITPDRLQL ENSTTRP00000014702/1-430 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025423/1-486 ---MAAAAAA DEAATRDVQR LLVQFQDEGG QLLGSPFDVP VDITPDKLQL bmy_02909T0/1-475 MAAVVAAVVA DEAATRDVQR LLVQFQDEGG QLLGSPFDVP VDITPDKLQL BACU020332/1-421 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000413572/1-485 VCNALLAQED PLPLAFFVHD AEIVSSLGKT LESQAVETEK VLDIIYQPQA ENSTTRP00000014702/1-430 --------ED PLPLAFYVHD AEIISSLGRT LESQAVETEK VLDIVYQPQA ENSBTAP00000025423/1-486 VCNALLAQED PLPLAFYVHD AEIVSSLGRT LESQAVETEK VLDIIYQPQA bmy_02909T0/1-475 VCNALLAQED PLPLAFYVHD AEITSSLGRT LESQAVETEK VLDIVYQPQA BACU020332/1-421 --------ED PLPLAFYVHD AEITSSLGRT LESQAVETEK VLDIVYQPQA 101 150 ENSP00000413572/1-485 IFRVRAVTRC TSSLEGHSEA VISVAFSPTG KYLASGSGDT TVRFWDLSTE ENSTTRP00000014702/1-430 IFRVRAVTRC TSSLEGHSEA VISVAFSPTG KYLASGSGDT TVRFWDISTE ENSBTAP00000025423/1-486 IFRVRAVTRC TSSLEGHSEA VISVAFSPTG KYLASGSGDT TVRFWDLSTE bmy_02909T0/1-475 IFRVRAVTRC TSSLEGHSEA VISVAFSPTG KYLASGSGDT TVRFWDLSTE BACU020332/1-421 IFRVRAVTRC TSSLEGHSEA VISVAFSPTG KYLASGSGDT TVRFWDLSTE 151 200 ENSP00000413572/1-485 TPHFTCKGHR HWVLSISWSP DGRKLASGCK NGQILLWDPS TGKQVGRTLA ENSTTRP00000014702/1-430 TPHFTCQGHR HWVLSISWSP DGKKLASGCK NGQILLWDPS TGKQVGRTLA ENSBTAP00000025423/1-486 TPHFTCQGHR HWVLSISWSP DGKKLASGCK NGQILLWDPS TGKQVGRALT bmy_02909T0/1-475 TPHFTCQ--- ---------- DGKKLASGCK NGQILLWDPS TGKQVGRTLA BACU020332/1-421 TPHFTCQGHR HWVLSISWSP DGTKLASGCK NGQILLWDPS TGKQVGRTLA 201 250 ENSP00000413572/1-485 GHSKWITGLS WEPLHANPEC RYVASSSKDG SVRIWDTTAG RCERILTGHT ENSTTRP00000014702/1-430 GHSKWITALS WEPLHANPEC RYVASSSKDG SVRVWDTAAG RCERILTGHT ENSBTAP00000025423/1-486 GHSKWITALS WEPLHANPEC RYVASSSKDG SVRVWDTTAG RCERTLTGHA bmy_02909T0/1-475 GHSKWITALS WEPLHANPEC RYVASSSKDG SVRVWDTAAG RCERILTGHT BACU020332/1-421 GHSKWITALS WEPLHANPEC RYVASSSKDG SVRVWDTAVG RCERILTGHT 251 300 ENSP00000413572/1-485 QSVTCLRWGG DGLLYSASQD RTIKVWRAHD GVLCRTLQGH GHWVNTMALS ENSTTRP00000014702/1-430 QSVTCLRWGG DGLLYSASQD RTIKVWRAHD GVLCRTLQGH GHWVNTMALS ENSBTAP00000025423/1-486 QSVTCLRWGG DGLLYSASQD RTIKVWRAHD GVLCRTLQGH GHWVNTMALS bmy_02909T0/1-475 QSVTCLRWGG DGLLYSASQD RTIKVWRAHD GVLCRTLQGH GHWVNTMALS BACU020332/1-421 QSVTCLRWGG DGLLYSASQD RTIKVWRAHD GVLCRTLQGH GHWVNTMALS 301 350 ENSP00000413572/1-485 TDYALRTGAF EPAEASVNPQ DLQGS----- --------LQ ELKERALSRY ENSTTRP00000014702/1-430 TDYALRTGAF DPAEASVNAQ DLRGS----- --------XX XXXXXXXXXX ENSBTAP00000025423/1-486 TDYALRTGAF EPAEASVNAQ DLRGS----- --------LQ ELKERALSRY bmy_02909T0/1-475 TDYALRTGAF DPAEASVNAQ DLRGSCDLVP SLLRYLDTVQ ELKERALSRY BACU020332/1-421 TDYALRTGAF DPAEASVNAQ DLRGS----- --------YH VC-------F 351 400 ENSP00000413572/1-485 NLVRGQGPER LVSGSDDFTL FLWSPAEDKK PLTRMTGHQA LINQVLFSPD ENSTTRP00000014702/1-430 XXXXGRGPER LVSGSDDFTL FLWSPAENKK PLARMTGHQA LINQVLFSAD ENSBTAP00000025423/1-486 NLVRGQGPER LVSGSDDFTL FLWSPAEDKK PLARMTGHQA LINQVVFSPD bmy_02909T0/1-475 NLVRGQGPER LVSGSDDFTL FLWSPAEDKK PLARMTGHQA LINQVLFSAD BACU020332/1-421 VPPQGQGPER LVSGSDDFTL FLWSPAEDKK PLARMTGHQA LINQVLFSAD 401 450 ENSP00000413572/1-485 SRIVASASFD KSIKLWDGRT GKYLASLRGH VAAVYQIAWS ADSRLLVSGS ENSTTRP00000014702/1-430 SRVIASASFD KSIKLWDGRT GKYLASLRGH VAAVYQIAWS ADSRLLVSGS ENSBTAP00000025423/1-486 SRVIASASFD KSIKLWDGRT GKYLASLRGH VAAVYQIAWS ADSRLLVSGS bmy_02909T0/1-475 SRIIASASFD ---------- -KYLASLRGH VAAVYQIAWS ADSRLLVSGS BACU020332/1-421 SRIIASASFD KSIKLWDGRT GKYLASLRGH VAAVYQIAWS ADSRLLVSGS 451 500 ENSP00000413572/1-485 SDSTLKVWDV KAQKLAMDLP GHADEVYAVD WSPDGQRVAS GGKDKCLRIW ENSTTRP00000014702/1-430 SDSTLKVWDV KAQKLATDLP GHADEVYAVD WSPDGQRVAS GGKDKCLRIL ENSBTAP00000025423/1-486 SDSTLKVWDV KAQKLSTDLP GHADEVYAVD WSPDGQRVAS GGKDKCLRIW bmy_02909T0/1-475 SDSTLKVWDV KAQKLVTDLP GHADEVYAVD WSPDGQRVAS GGKDKCLRM- BACU020332/1-421 SDSTLKVWDV KAQKLATDLP GHADEVYAVD WSPDGQRVAS GGKDKCLRM- 501 550 ENSP00000413572/1-485 RR ENSTTRP00000014702/1-430 S- ENSBTAP00000025423/1-486 RR bmy_02909T0/1-475 -- BACU020332/1-421 --