KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:11 2014 Check: 00 .. Name: bmy_15651T0/1-994 Len: 1454 Check: 303 Weight: 1.00 Name: ENSP00000264638/1-1384 Len: 1454 Check: 8699 Weight: 1.00 Name: ENSBTAP00000025424/1-1388 Len: 1454 Check: 4935 Weight: 1.00 Name: BACU007095/1-1394 Len: 1454 Check: 198 Weight: 1.00 Name: ENSTTRP00000011080/1-1375 Len: 1454 Check: 6240 Weight: 1.00 // 1 50 bmy_15651T0/1-994 MGEREERAPV AQRAGPLGRL GGATLINMSV PPTQTAVTRS WLGPCMHAPW ENSP00000264638/1-1384 ---------- ---------- -MMHLRLFCI LLAAVSGAEG W--------- ENSBTAP00000025424/1-1388 ---------- ---------- -MMRLRLFCI LLAAVSGARG W--------- BACU007095/1-1394 ---------- ---------- --MRLRLFCI LLAAVSGARG W--------- ENSTTRP00000011080/1-1375 ---------- ---------- -MMRLRLFCI LLAAVSGARG W--------- 51 100 bmy_15651T0/1-994 APPPTMGSSL RPVLPGCTVS VVAP--HGGV GDSGGLEVNG EPVVKALAPS ENSP00000264638/1-1384 ------GYY- -----GCDEE LVGPLYARSL GASSYYSLLT APRFARLH-- ENSBTAP00000025424/1-1388 ------GYY- -----GCDEE LVGPLYARSL GASSYYGLFT APRFARLH-- BACU007095/1-1394 ------GYY- -----GCDEE LVGPLYARSL GASSYYGLFT APRFARLH-- ENSTTRP00000011080/1-1375 ------GYY- -----GCDEE LVGPLYARSL GASSYYGLFT APRFARLH-- 101 150 bmy_15651T0/1-994 IGISGWSPRI GDPNPWLQID LMKKHRIRAV ATQGSFNSWD WVTHYMLLYG ENSP00000264638/1-1384 -GISGWSPRI GDPNPWLQID LMKKHRIRAV ATQGSFNSWD WVTRYMLLYG ENSBTAP00000025424/1-1388 -GISGWSPRI GDPNPWLQID LMKKHRIRAV ATQGSFNSWD WVTRYMLLYG BACU007095/1-1394 -GISGWSPRI GDPNPWLQID LMKKHRIRAV ATQGSFNSWD WVTHYMLLYG ENSTTRP00000011080/1-1375 -GISGWSPRI GDPNPWLQID LMKKHRIRAV ATQGSFNSWD WVTHYMLLYG 151 200 bmy_15651T0/1-994 DRVDSWTPFY QRGHNATFFV RGGRQGGAVP GRQ------- ---RVSPVPN ENSP00000264638/1-1384 DRVDSWTPFY QRGHNSTFF- -GNVNESAVV RHDLHFHFTA RYIRIVPLAW ENSBTAP00000025424/1-1388 DRVDSWTPFY QRGHNATFF- -GNVNESAVV RHDLHYHFTA RYIRIVPLAW BACU007095/1-1394 DRVDSWTPFY QRGHNATFF- -GNMNESAVV RHDLHYHFTA RYIRIVPLAW ENSTTRP00000011080/1-1375 DRVDSWTPFY QRGHNATFF- -GNVNESAVV RHDLHYHFTA RYIRIVPLAW 201 250 bmy_15651T0/1-994 PPTAPRA--- -------ESD VLYFDGDDAI SYRFPRGVSR SLWDVFAFSF ENSP00000264638/1-1384 NPRGKIGLRL GLYGCPYKAD ILYFDGDDAI SYRFPRGVSR SLWDVFAFSF ENSBTAP00000025424/1-1388 NPRGKIGLRL GLYGCPYKSD VLYFDGDDAI SYRFPRGVSR SLWDVFAFSF BACU007095/1-1394 NPRGKIGLRL GLYGCPYKSD VLYFDGDDAI SYRFPRGVSR SLWDVFAFSF ENSTTRP00000011080/1-1375 NPRGKIGLRL GLYGCPYKSD VLYFDGDDAI SYRFPRGVSR SLWDVFAFSF 251 300 bmy_15651T0/1-994 KTEEKDGLLL HAEGAQGDYV TLELQGAHLL LHMSLGSSPI QPRPGHTTVS ENSP00000264638/1-1384 KTEEKDGLLL HAEGAQGDYV TLELEGAHLL LHMSLGSSPI QPRPGHTTVS ENSBTAP00000025424/1-1388 KTEEKDGLLL HAEGAQGDYV TLELQGAHLL LHMSLGSSPI QPRPGHTTVS BACU007095/1-1394 KTEEKDGLLL HAEGAQGDYV TLELQGAHLL LHMSLGSSPI QPRPGHTTVS ENSTTRP00000011080/1-1375 KTEEKDGLLL HAEGAQGDYV TLELQGAHLL LHMSLGSSPI QPRPGHTTVS 301 350 bmy_15651T0/1-994 AGGVLNDQHW HYVRVDRFGR EANLTLDGYE QRFVLNGDFE RLNLDTEMFI ENSP00000264638/1-1384 AGGVLNDQHW HYVRVDRFGR DVNFTLDGYV QRFILNGDFE RLNLDTEMFI ENSBTAP00000025424/1-1388 AGGVLNDQHW HYVRVDRFGR EANLTLDGYV QRFVLNGDFE RLNLDNEMFI BACU007095/1-1394 AGGVLNDQHW HYVRVDRFGR EANLTLDGYE QRFVLNGDFE RLNLDTEMFI ENSTTRP00000011080/1-1375 AGGVLNDQHW HYVRVDRFGR EANLTLDGYE QRFVLNGDFE RLNLDTEMFI 351 400 bmy_15651T0/1-994 GGLVGAAQKN LAYRHNFRGC MENVIFNRVN IADLAVRRHS RITFEASGQG ENSP00000264638/1-1384 GGLVGAARKN LAYRHNFRGC IENVIFNRVN IADLAVRRHS RITF------ ENSBTAP00000025424/1-1388 GGLVGAAQKN LAYRHNFRGC IENVIFNRVN IADLAVRRHS RITF------ BACU007095/1-1394 GGLVGAAQKN LAYRHNFRGC MENVIFNRVN IADLAVRRHS RITFEASGQG ENSTTRP00000011080/1-1375 GGLVGAAQKN LAYRHNFRGC MENVIFNRVN IADLAVRRHS RITF------ 401 450 bmy_15651T0/1-994 DLGGRGVKAA WSQEGKVAFR CLDPVPHPIN FGGPHNFVQV PGFPRRGRLA ENSP00000264638/1-1384 ---------- ---EGKVAFR CLDPVPHPIN FGGPHNFVQV PGFPRRGRLA ENSBTAP00000025424/1-1388 ---------- ---EGKVAFR CLDPVPHPIN FGGPHNFVQV PGFPRRGRLA BACU007095/1-1394 DLGGRGVKAA WSQEGKVAFR CLDPVPHPIN FGGPHNFVQV PGFPRRGRLA ENSTTRP00000011080/1-1375 ---------- ---EGKVAFR CLDPVPHPIN FGGPHNFVQV PGFPRRGRLA 451 500 bmy_15651T0/1-994 VSFRFRTWDL TGLLLFSRLG DGLGHVELML SEGQVNVSIV QTGRKKLQFA ENSP00000264638/1-1384 VSFRFRTWDL TGLLLFSRLG DGLGHVELTL SEGQVNVSIA QSGRKKLQFA ENSBTAP00000025424/1-1388 VSFRFRTWDL TGLLLFSSLG DGLGHVELML SEGQVNVSVV QTGRKKLQFA BACU007095/1-1394 VSFRFRTWDL TGLLLFSRLG DGLGHVELML SEGQVNVSIV QTGRKKLQFA ENSTTRP00000011080/1-1375 VSFRFRTWDL TGLLLFSRLG DGLGHVELML SEGQVNVSIV QTGRKKLQFA 501 550 bmy_15651T0/1-994 AGFRLNDGFW HEVNFVAQEN HAVISIDDVE GAEVRVSYPL LIRTGTSYFF ENSP00000264638/1-1384 AGYRLNDGFW HEVNFVAQEN HAVISIDDVE GAEVRVSYPL LIRTGTSYFF ENSBTAP00000025424/1-1388 AGFRLNDGFW HEVNFVAQEN HAVISIDDVE GAEVRVSYPL LIRTGTSYFF BACU007095/1-1394 AGFRLNDGFW HEVNFVAQEN HAVISIDDVE GAEVRVSYPL LIRTGTSYFF ENSTTRP00000011080/1-1375 AGFRLNDGFW HEVNFVAQEN HAVISIDDVE GAEVRVSYPL LIRTGTSYFF 551 600 bmy_15651T0/1-994 GGCPKPASRS GCHSNQTAFH GCMELLKVDG QLVNLTLVEG RRLGYYAEVL ENSP00000264638/1-1384 GGCPKPASRW DCHSNQTAFH GCMELLKVDG QLVNLTLVEG RRLGFYAEVL ENSBTAP00000025424/1-1388 GGCPKPASRS GCHSNQTAFH GCMELLKVDG QLVNLTLVEG RRLGYYAEVL BACU007095/1-1394 GGCPKPASRS GCHSNQTAFH GCMELLKVDG QLVNLTLVEG RRLGYYAEVL ENSTTRP00000011080/1-1375 GGCPKPASRS GCHSNQTAFH GCMELLKVDG QLVNLTLVEG RRLGYYAEVL 601 650 bmy_15651T0/1-994 FDTCGITD-- ---------- ---------- ---------- ---------- ENSP00000264638/1-1384 FDTCGITDRC SPNMCEHDGR CYQSWDDFIC YCELTGYKGE TCHTPLYKES ENSBTAP00000025424/1-1388 FDTCGITDRC SPNMCEHDGR CYQSWDDFIC YCELTGYKGE TCHQPLYKES BACU007095/1-1394 FDTCGITDRC SPNMCEHDGR CYQSWDDFIC YCELTGYKGE TCHQPLYKES ENSTTRP00000011080/1-1375 FDTCGITDRC SPNMCEHDGR CYQSWDDFIC YCELTGYKGE TCHQPLYKES 651 700 bmy_15651T0/1-994 ------SGKT SGNFTIDPDG SGPLKPFVVY CDIRENRAWT VVRHDRLWTT ENSP00000264638/1-1384 CEAYRLSGKT SGNFTIDPDG SGPLKPFVVY CDIRENRAWT VVRHDRLWTT ENSBTAP00000025424/1-1388 CEAYRLSGKT SGNFTIDPDG SGPLKPFVVY CDIRENRAWT VVRHDRLWTT BACU007095/1-1394 CEAYRLSGKT SGNFTIDPDG SGPLKPFVVY CDIRENRAWT VVRHDRLWTT ENSTTRP00000011080/1-1375 CEAYRLSGKT SGNFTIDPDG SGPLKPFVVY CDIRENRAWT VVRHDRLWTT 701 750 bmy_15651T0/1-994 RVTGSSMERP FLGAVQYWNA SWEEVSALAN ASQHCEQWIE FSCYNSRLLN ENSP00000264638/1-1384 RVTGSSMERP FLGAIQYWNA SWEEVSALAN ASQHCEQWIE FSCYNSRLLN ENSBTAP00000025424/1-1388 RVTGSSMERP FLGAVQYWNA SWEEVSALAN ASQHCEQWIE FSCYNSRLLN BACU007095/1-1394 RVTGSSMERP FLGAVQYWNA SWEEVSALAN ASQHCEQWIE FSCYNSRLLN ENSTTRP00000011080/1-1375 RVTGSSMERP FLGAVQYWNA SWEEVSALAN ASQHCEQWIE FSCYNSRLLN 751 800 bmy_15651T0/1-994 TAGGYPYSFW IGRNEEQHFY WGGSQPGIQR CACGLDRSCV DPALHCNCDA ENSP00000264638/1-1384 TAGGYPYSFW IGRNEEQHFY WGGSQPGIQR CACGLDRSCV DPALYCNCDA ENSBTAP00000025424/1-1388 TAGGYPYSFW IGRNEEQHFY WGGSQPGIQR CACGLDRSCV DPALHCNCDA BACU007095/1-1394 TAGGYPYSFW IGRNEEQHFY WGGSQPGIQR CACGLDRSCV DPALHCNCDA ENSTTRP00000011080/1-1375 TAGGYPYSFW IGRNEEQHFY WGGSQPGIQR CACGLDRSCV DPALHCNCDA 801 850 bmy_15651T0/1-994 DQPQWRTDKG LLTFVDHLPV TQVVVGDTNR SSSEAQFFLR PLRCYGDRNS ENSP00000264638/1-1384 DQPQWRTDKG LLTFVDHLPV TQVVIGDTNR STSEAQFFLR PLRCYGDRNS ENSBTAP00000025424/1-1388 DQPQWRTDKG LLTFVDHLPV TQVVVGDTNR SSSEAQFFLR PLRCYGDRNS BACU007095/1-1394 DQPQWRTDKG LLTFVDHLPV TQVVVGDTNR SSSEAQFFLR PLRCYGDRNS ENSTTRP00000011080/1-1375 DQPQWRTD-G LLTFVDHLPV TQVVVGDTNR SNSEAQFFLR PLRCYGDRNS 851 900 bmy_15651T0/1-994 WNTIAFHTGA ALRFPPIQAN HSLDVSFYFR TSAPSGVFLE NTGGPYCQWR ENSP00000264638/1-1384 WNTISFHTGA ALRFPPIRAN HSLDVSFYFR TSAPSGVFLE NMGGPYCQWR ENSBTAP00000025424/1-1388 WNTISFHTGA ALRFPPIRAN HSLDVSFYFR TSAPSGVFLE NMGGPYCQWR BACU007095/1-1394 WNTIAFHTGA ALRFPPIQAN HSLDVSFYFR TSAPSGVFLE NTGGPYCQWR ENSTTRP00000011080/1-1375 WNTIAFHTGA ALRFPPIQAN HSLDVSFYFR TSAPSGVFLE NAGGPYCQWR 901 950 bmy_15651T0/1-994 RPYVRVELNT SRDVVFAFDV GNGDENLTVH SEDFEFNDDE WHLVRAEINV ENSP00000264638/1-1384 RPYVRVELNT SRDVVFAFDV GNGDENLTVH SDDFEFNDDE WHLVRAEINV ENSBTAP00000025424/1-1388 RPYVRVELNT SRDVVFAFDV GNGDENLTVH SDDFEFNDDE WHLVRAEINV BACU007095/1-1394 RPYVRVELNT SRDVVFAFDV GNGDENLTVH SDDFEFNDDE WHLVRAEINV ENSTTRP00000011080/1-1375 RPYVRVELNT SRDVVFAFDV GNGDENLTVH SDDFEFNDDE WHLVRAEINV 951 1000 bmy_15651T0/1-994 KQARLRVDHR PWVLRPMPLQ TYIWLEYDQP LYVGSAELKR RPFVGCLRAM ENSP00000264638/1-1384 KQARLRVDHR PWVLRPMPLQ TYIWMEYDQP LYVGSAELKR RPFVGCLRAM ENSBTAP00000025424/1-1388 KQARLRVDHR PWVLRPMPLQ TYIWLEYDRP LYVGSAELKR RPFVGCLRAM BACU007095/1-1394 KQARLRVDHR PWVLRPMPLQ TYLWLEYDQP LYVGSAELKR RPFVGCLRAM ENSTTRP00000011080/1-1375 KQARLRVDHR PWVVRPMPLQ TYIWLEYDQP LYVGSAELKR RPFVGCLRAM 1001 1050 bmy_15651T0/1-994 RLNGVTLNLE GRANASEGTS PNCTGHCAHP RFPCFHGGRC VERYSYYTCD ENSP00000264638/1-1384 RLNGVTLNLE GRANASEGTS PNCTGHCAHP RLPCFHGGRC VERYSYYTCD ENSBTAP00000025424/1-1388 RLNGVTLNLE GRANASEGTS PNCTGHCAHP RFPCFHGGRC VERYSYYTCD BACU007095/1-1394 RLNGVTLNLE GRANASEGTS PNCTGHCAHP RFPCFHGGRC VERYSYYTCD ENSTTRP00000011080/1-1375 RLNGVTLNLE GRANASEGTS PNCTGHCAHP RFPCFHGGRC VERYSYYTCD 1051 1100 bmy_15651T0/1-994 CDLTAFDGPY CNHG------ ---------- ---------- ---------- ENSP00000264638/1-1384 CDLTAFDGPY CNHDIGGFFE PGTWMRYNLQ SALRSAAREF SHMLSRPVPG ENSBTAP00000025424/1-1388 CDLTAFDGPY CNHDIGGFFE PGTWMRYNLQ SALRSAAREF SHMLSRPVPG BACU007095/1-1394 CDLTAFDGPY CNHDIGGFFE PGTWMRYNLQ SALRSAAREF SHMLSRPVPG ENSTTRP00000011080/1-1375 CDLTAFDGPY CNHDIGGFFE PGTWMRYNLQ SALRSAAREF SHMLSRPVPG 1101 1150 bmy_15651T0/1-994 ---------- ---------- ---------- ---------- ---------- ENSP00000264638/1-1384 YEPGYIPGYD TPGYVPGYHG PGYRLPDYPR PGRPVPGYRG PVYNVTGEEV ENSBTAP00000025424/1-1388 YEPGYIPGYD TPGYVPGYHG PGYRLPDYPR PGRPVPGYRG PVYNVTGEEV BACU007095/1-1394 YEPGYIPGYD TPGYAPGYHG PGYRLPDYPR PGRPVPGYRG PVYNVTGEEV ENSTTRP00000011080/1-1375 YEPGYVPGYD TPGYAPGYHG PGYRLPDYPR PGRPVPGYRG PVYNVTGEEV 1151 1200 bmy_15651T0/1-994 ---------- ---------- ---------- ---------- ---------- ENSP00000264638/1-1384 SFSFSTSSAP AVLLYVSSFV RDYMAVLIKD DGTLQLRYQL GTSPYVYQLT ENSBTAP00000025424/1-1388 SFSFSTQSAP AVLLYVSSFV RDYMAVLIKE DGTLQLRYQL GTSPYVYQLT BACU007095/1-1394 SFSFSTHSAP AVLLYVSSFV RDYMAVLIKE DGTLQLRYQL GTSPYVYQLT ENSTTRP00000011080/1-1375 SFSFSTHSAP AVLLYVSSFV RDYMAVLIKE DGTLQLRYQL GTSPYVYQLT 1201 1250 bmy_15651T0/1-994 ---------- ---------- ---------- ---------- ---------- ENSP00000264638/1-1384 TRPVTDGQPH SINITRVYRN LFIQVDYFPL TEQKFSLLVD SQLDSPKALY ENSBTAP00000025424/1-1388 TRPVTDGQPH SVNITRVYRN LFIQVDYFSL TEQKFSLLVD SQLDSPKALY BACU007095/1-1394 TRPVTDGQPH SVNLTRVYRN LFIQVDYFPL TEQKFSLLVD SQLDSPKALY ENSTTRP00000011080/1-1375 TRPVTDGQPH SVNLTRVYRN LFIQVDYFPL TEQKFSLLVD SQLDSPKALY 1251 1300 bmy_15651T0/1-994 ---------- ---------- ---------- ---------- ---------- ENSP00000264638/1-1384 LGRVMETGVI DPEIQRYNTP GFSGCLSGVR FNNVAPLKTH FRTPRPMTAE ENSBTAP00000025424/1-1388 LGRVMETGVI DPEIQRYNTP GFSGCLSGVR FNNVAPLKTH FRTPRPMTEE BACU007095/1-1394 LGRVMETGVI DPEIQRYNTP GFSGCLSGVR FNNVAPLKSH FRTPRPMTSE ENSTTRP00000011080/1-1375 LGRVMETGVI DPEIQRYNTP GFSGCLSGVR FNNVAPLKSH FRTPRPMTSE 1301 1350 bmy_15651T0/1-994 ---------- ---------- ---------- ---------- ---------- ENSP00000264638/1-1384 LAEALRVQGE LSESNCGAMP RLVSEVPPEL DPWYLPPDFP YYHDEGWVAI ENSBTAP00000025424/1-1388 LAEALRVQGE LSESNCGAMP RLVSEVPPEL DPWYLPPDFP YYHDDGWVAI BACU007095/1-1394 LAEALRVQGE LSESNCGAMP RLVSEVPPEL DPWYLPPDFP YYHDDGWVAI ENSTTRP00000011080/1-1375 LAEALRVQGE LSESNCGAMP RLVSEVPPEL DPWYLPPDFP YYHDDGWVAV 1351 1400 bmy_15651T0/1-994 ---------- ---------- ---------- ---------- ---------- ENSP00000264638/1-1384 LLGFLVAFLL LGLVGMLVLF YLQNHRYKGS YHTNEPKAAH EYHPGSKPPL ENSBTAP00000025424/1-1388 LLGFLVAFLL LGLVGMLVLF YLQNHRYKGS YHTNEPKATH DYHAGSKPPL BACU007095/1-1394 LLGFLVAFLL LGLVGMLVLF YLQNHRYKGS YHTNEPKATH DYHPGSKPPL ENSTTRP00000011080/1-1375 LLGFLVAFLL LGLVGMLVLF YLQNHRYKGS YHTNEPKATH DYHPGSKPPL 1401 1450 bmy_15651T0/1-994 ---------- ---------- ---------- ---------- ---------- ENSP00000264638/1-1384 PTSGPAQVPT PTAAPNQAPA SAPA----PA PTPAPAPGPR DQNLPQILEE ENSBTAP00000025424/1-1388 PTSGPVPAPA PASAPTPTPA STQVPAPAPA PAPAPAPGPR DQNLPQILEE BACU007095/1-1394 PTSGPAQAPA PA----PTPA STQV------ --PAPAPGPR DQNLPQILEE ENSTTRP00000011080/1-1375 PTSGPAQAPD PA----PTPA STQV------ --PAPAPGPR DQNLPQILEE 1451 1500 bmy_15651T0/1-994 ---- ENSP00000264638/1-1384 SRSE ENSBTAP00000025424/1-1388 SRSE BACU007095/1-1394 SRSE ENSTTRP00000011080/1-1375 SRSE