KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:26:13 2014 Check: 00 .. Name: ENSP00000333283/1-881 Len: 891 Check: 7483 Weight: 1.00 Name: ENSBTAP00000025435/1-879 Len: 891 Check: 5742 Weight: 1.00 Name: bmy_02266T0/1-875 Len: 891 Check: 9436 Weight: 1.00 Name: ENSTTRP00000006093/1-725 Len: 891 Check: 7472 Weight: 1.00 // 1 50 ENSP00000333283/1-881 MAGAAPRVRY LAGFCCPLGG LAAGKPRVLC HEAEVFLSTG SELVYVYDQE ENSBTAP00000025435/1-879 MADPRPRVEY LAGFCCPLGG VAAGKPRVLC HGAEIFLSTG GEMVYVYDRE bmy_02266T0/1-875 MAGLAPRVEY LAGFCCPLGG LAAGKPRVLC HGAEVFLSTG SELVYVYDRE ENSTTRP00000006093/1-725 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000333283/1-881 GGLLTAAFRF PDQVWHLELL APRRLLYALC ARRGLYCLSL DHPGRSRSTS ENSBTAP00000025435/1-879 GRLLIAVYKF PGQVWHLELL ALRKVLYVLC ARSGIYCLSL DQTTRSVSRD bmy_02266T0/1-875 GRLLIAVYKF PGQVWHLELL ALRRALYVLC ARSGIYCLSL DQASRSVSRD ENSTTRP00000006093/1-725 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000333283/1-881 Q----DDRDS EDG---DQPS PVIPVDPDAC ILPDAALCAF TLLDSVLVTL ENSBTAP00000025435/1-879 EEDGGDDQDR EDGQVGEPPV PVIPVDPDSC VLPDASLHAF TVLDDTLVTL bmy_02266T0/1-875 DEDDRDDQDS EDGQVDELPA PVIPVHPDTC VLPSATLHAF TVLDDVLITL ENSTTRP00000006093/1-725 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000333283/1-881 VQGPARWKMQ LFEQPCPGED PRPGGQIGEV ELSSYTPPAG VPGKPAAPHF ENSBTAP00000025435/1-879 ALGPTQWKMQ LFERPSPGED PRPGGQIGEV ELSTCTPPAG SQGESAAPRF bmy_02266T0/1-875 AQGPTQWKVQ LFERPCPGED PRPGGQIGEV ELSTCTPPAG SLGEPTAPRF ENSTTRP00000006093/1-725 --------VQ LFECPCPGED PRPGGQIGEV ELSTCTPPAG SLGEPTAPRF 201 250 ENSP00000333283/1-881 LPVLCSVSPS GSRVPHDLLG GSGGFTLEDA LFGLLFGADA TLLQSPVVLC ENSBTAP00000025435/1-879 LPVLCCASPP GSRTPLGHSR SSEGVMLEGA LFGLLFGADA ALLESPVVLC bmy_02266T0/1-875 LPVLCCVSPP GSRAPRGHPW GSGGVTLEGP LFGLLFGSDA SLLESPVILC ENSTTRP00000006093/1-725 LPVLCCASPP GSRAPHGHPW GSGGVTLEGA LFGLLFGTDA SLLESPVILC 251 300 ENSP00000333283/1-881 GLPDGQLCCV ILKALVTSRS APGDPNALVK ILHHLEEPVI FIGALKTEPQ ENSBTAP00000025435/1-879 GLPDGQLCCV IIKTLVTSMS APGDPKALVK ILHHLEEPVV FIGALRTEPL bmy_02266T0/1-875 GLPDGQLCCV VLKTLVTSRS APGDPKALVK ILHHLEEPVV FIGALRTELP ENSTTRP00000006093/1-725 GLPDGQLCCV VLKTLVTSRS APGDPKALVK ILHH-EEPVI FIGALRTEPL 301 350 ENSP00000333283/1-881 AAEAAENFLP DEDVHCDCLV AFGHHGRMLA IKASWDESGK LVPELREYCL ENSBTAP00000025435/1-879 AEDM------ -EDVHCDCLV ALGHHGRTLA IKASWDEAGH LVPELREYSI bmy_02266T0/1-875 SEDA------ -ADAYCDCLV ALGHHGRTLA IKASWDEAGH LVPELREYSL ENSTTRP00000006093/1-725 SEDV------ -EDVYCDCLV ALGHHGRTLA IKASWDEAGH LVPELREYSL 351 400 ENSP00000333283/1-881 PGPVLCAACG GGGRVYHSTP SDLCVVDLSR GSTPLGPEQP EEGPGGLPPM ENSBTAP00000025435/1-879 PGPVLCAACD RSSHVYHSTS AGLRVVDLAQ EGSPLDPTER DGAPGSLPPL bmy_02266T0/1-875 PGPVLCAARG RGGHVYHSTP SDLCVVDLAQ ESSPWDLTQH DGAPGGLPSL ENSTTRP00000006093/1-725 PGPVLCAACG RGGRVYHSTP SDLCVVDLAQ EVSPWDLTQR DGAPGGLPSL 401 450 ENSP00000333283/1-881 LCPASLNICS VVSLSASPRT HEGGTKLLA- -LSAKGRLMT CSLDLDSEMP ENSBTAP00000025435/1-879 LYPDNLGVGS LVTLCVSSSA PEGGAELLA- -LSAKGRLMI CHLDPHNEAP bmy_02266T0/1-875 LCPASLSACS VVTLSVSSRA PEGGAELLA- -LSAKGRLMT CSLDPHSETP ENSTTRP00000006093/1-725 LCPASLSVCS VVTLSVSSRA PEDSSMPLAP CVSAKGRLMT CSLDPHSETP 451 500 ENSP00000333283/1-881 GPARMTTESA GQKIKELLSG IGNISERVSF LKKAVDQRNK ALTSLNEAMN ENSBTAP00000025435/1-879 QSSRVTSAKA GKKIKQLLSG IGTVSERVSS LKKAVDQRDK ALTCLNEVMN bmy_02266T0/1-875 HPTRVTSANA GQKIKELLSG IGTVSERVSS LKKAVDQRDK ALTCLNEAMN ENSTTRP00000006093/1-725 HPTRVTSANA GQKIKELLSG IGTVSERVSS LKKAVDQRDK ALTCLNEAMN 501 550 ENSP00000333283/1-881 VSCALLSSGT GPRPISCTTS TTWSRLQTQD VLMATCVLEN SSSFSLDQGW ENSBTAP00000025435/1-879 VSCALLSSRE GPRPISCTIS TTWSHLQLQD VLVATCLLEN SSGFSLDRGW bmy_02266T0/1-875 VSCALLSSRE GPRPISCTIS TSWSRLQLQD MLTATCLLEN SSGFSLDRGW ENSTTRP00000006093/1-725 VSCALLSSRE GPRPISCTIS TSWSRLQLQD VLTATCLLEN SSGFSLDRGW 551 600 ENSP00000333283/1-881 TLCIQVLTSS CALDLDSACS AITYTIPVDQ LGPGARREVT LPLGPGENGG ENSBTAP00000025435/1-879 ALCIQVLRSS RALDLDSAGS AITYTIPVDQ LGPGGRREVT LPLGPGEDGA bmy_02266T0/1-875 ALCIQVLRSS RALDLDSAVS AITYTIPVDQ LGPGGQREVT LPLGPGEDGA ENSTTRP00000006093/1-725 ALCIQVRRSS RALDLDSAVS AITYTIPVDQ LGPGGQREVT LPLGPGEDGA 601 650 ENSP00000333283/1-881 LDLPVTVSCT LFYSLREVVG GALAPSDS-E DPFLDECPSD VLPEQEGVCL ENSBTAP00000025435/1-879 LDLPVTVSCA LFYSLREVVG RALTPQDPFK DPPSAECTPI VLPEQDGVCL bmy_02266T0/1-875 LDLPVTVSCA LFYSLREVVG GALALTDPFK DPSSNERTPD VLPDQEGVCL ENSTTRP00000006093/1-725 LDLPVTVSCA LFYSLREVVG GALALTDPFK DPSSNERTPD VLPEQDGVCL 651 700 ENSP00000333283/1-881 PLSRHTVDML QCLRFPGLAP PHTRAPSPLG PTRDPVATFL ETCREPGSQP ENSBTAP00000025435/1-879 PLSEHTVDML QGLRFPSLGV PHTQA---LG PARDPIHTFL GTCRVPGSQP bmy_02266T0/1-875 PLSEHTVDLL QGLRFPGLAA PHAQALGPLS PARDPVHTFL GTCCGPVSQP ENSTTRP00000006093/1-725 PLSEHTVDML QGLRFPGLAA AHTQALGPLS PARDPIHTFL ETCCGPVSQP 701 750 ENSP00000333283/1-881 AGPASLRAEY LPPSVASIKV SAELLRAALK DGHSGVPLCC ATLQWLLAEN ENSBTAP00000025435/1-879 AGPESLRAKY LPPSVATIKV SAELLRAALG DSHAGVSLGC ATLQWLLAEN bmy_02266T0/1-875 AGPASLRAKY LPPSVATIKV SAELLRATLG DSHAGVSLCC ATLQWLLAEN ENSTTRP00000006093/1-725 AGPASLRAKY LPPSVATVKV SAELLRAALG DDHAGVSLCS ATLQWLLAEN 751 800 ENSP00000333283/1-881 AAVDVVRARA LSSIQGVAPD GANVHLIVRE VAMTDLCPAG PIQAVEIQVE ENSBTAP00000025435/1-879 AAADIIKAQA LSSVQGVAPD GTDVHLIIRE ATVTDLCPAG PIQAMEIQVE bmy_02266T0/1-875 AAADIVRAQA LSSVQGVAPD GTDV------ -AVTDLCPAG PIQAMEIQVE ENSTTRP00000006093/1-725 AIADIVRAQA LSSVQGVAPD GTDVHLIIRE VAVTDLCPAG PIQAMEIQVE 801 850 ENSP00000333283/1-881 SSSLADICRA HHAVVGRMQT MVTEQATQGS SAPDLRVQYL RQIHANHETL ENSBTAP00000025435/1-879 SSSLANMCRA HHAIVGRLQR LVVEQAARGS SPPDLRLQYL HQMQANHETL bmy_02266T0/1-875 SSSLANMCRA HHAIVGRLQR LVMEQAARGS SPPDLRLQYL HQIQANHETL ENSTTRP00000006093/1-725 SSSLANMCRA HHAIVGRLQR LVMEQAARGS SPPDLRLQYL HQIQANHETL 851 900 ENSP00000333283/1-881 LREVQTLRDR LCTEDEASSC ATAQRLLQVY RQLRHPSLIL L ENSBTAP00000025435/1-879 LREVQTLRDR LCTEDEASSC ATAQRLLQVY RRLRSPSLLL L bmy_02266T0/1-875 LREVQTLRDR LCTEDEASSC TTAQRLLQVY RQLRSPSLLL L ENSTTRP00000006093/1-725 LREVQTLRDR LCTEDEASSC ATAQRLLQVY RQLRSPSLLL L