KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:26:14 2014 Check: 00 .. Name: ENSP00000338258/1-356 Len: 382 Check: 3960 Weight: 1.00 Name: ENSBTAP00000025446/1-347 Len: 382 Check: 5405 Weight: 1.00 Name: bmy_11003T0/1-356 Len: 382 Check: 7727 Weight: 1.00 Name: BACU011477/1-371 Len: 382 Check: 1415 Weight: 1.00 // 1 50 ENSP00000338258/1-356 MPILKQLVSS SVHSKRRSRA DLTAEMISAP LGDFRHTMHV GRAGDAFGDT ENSBTAP00000025446/1-347 MPILKQLVSS SVHSKRRSRV DLTAEMISAP LGDFRHTMHV GRAGDAFGDT bmy_11003T0/1-356 MPILKQLVSS SVHSKRRSRV DLTAEMISAP LGDFRHTMHV GRAGDAFGDT BACU011477/1-371 MPILKQLVSS SVHSKRRSRV DLTAEMISAP LGDFRHTMHV GRAGDAFGDT 51 100 ENSP00000338258/1-356 SFLNSKAGEP DGESLDEQ-P -SSSSSKRSL LSRKFRGSKR SQSVTRGERE ENSBTAP00000025446/1-347 SFLNSKAGEL DGESVDEQAP SSSSSSKRSL LSRKFRASKR SQSVTRSDRE bmy_11003T0/1-356 SFLNSKAGEL DSESVDEQAA -ASSSSKRGL LARKFRGSKR SQSVSRGDPE BACU011477/1-371 SFLNSKAGEL DSESVDEQAA -ASSSSKRGL LARKFRGSKR SQSVSRGDRE 101 150 ENSP00000338258/1-356 QRDMLGSLRD SALFVKNAMS LPQLNEKEAA EKGTSKLPKS LSSSPVKKAN ENSBTAP00000025446/1-347 QRDVLGSLRD SALFVKNAMS LPQLNEKEAA EKGSSKLPKS LSSSPVKKAS bmy_11003T0/1-356 QRDVLGPLRD SALSVKNAMS LPQLNEKEAA EKGSSKLPKS LSSSPVRKAS BACU011477/1-371 QRDVLGPLRD SALFVKNAMS LPQLNEKEAA EKGSSKLPKS LSSSPVRKAS 151 200 ENSP00000338258/1-356 DGEGGDEEAG TEEAVPRRNG AAGPHSPDPL LDEQAFGDLT DLPVVPKATY ENSBTAP00000025446/1-347 -AEG-----S LEEAAPPRNG AAAPHSPDPL LEEQAFGDLA DLPMVPKASF bmy_11003T0/1-356 -GEG-----G PEEAVPRRNG ASAPHSPDPL LDEQAFGDLA DLPVVPKASF BACU011477/1-371 -GEG-----G PEEAVPRRNG ASAPHSPDPL LDEQAFGDLA DLPVVPKASF 201 250 ENSP00000338258/1-356 GLKHAESIMS FHIDLGPSML GDVLSIMDK- EEWDP----- EEGEGGYHGD ENSBTAP00000025446/1-347 GLKHAESIMS FHIDLGPSML GDVLSVMDKG GEWEP---EG APDDGGYHGD bmy_11003T0/1-356 GLKHAESIMS FHIDLGPSML GDVLSIMDK- AEWEPEEEEE EEEEVGYHGD BACU011477/1-371 GLKHAESIMS FHIDLGPSML GDVLSIMDK- AEWEP-EEEE EEGEVGYHGD 251 300 ENSP00000338258/1-356 EGAAGTITQA PPYAVA---- ---------- --APPLARQE GKAGPDLPSL ENSBTAP00000025446/1-347 GDPAAIPAS- ---------- ---------- --APQAAGQE GEGGPD---V bmy_11003T0/1-356 EDPAGSPAHA PPTVAA---- ---------- --APPLARQE GAGGPDLPAL BACU011477/1-371 EDPAGSPAQA PPTVEAAPPL ARQEGAPPAG ALAPPLARQE GAGGPDLPAL 301 350 ENSP00000338258/1-356 PSHALEDEGW -AAAAPSPGS ARSMGSHTTR DSSSLSSCTS GILEERSPAF ENSBTAP00000025446/1-347 PSRALQDEGW AAAAAPSPGS ARSAGSHTTR DSSSLSSCTS GVLEERSPAF bmy_11003T0/1-356 PSRALQEEGW -AAVAPSPGS ARSVGSHTTR DSSSLSSCTS GVLEERSPAS BACU011477/1-371 PSRALQEEGW -AAVAPSPGS ARSVGSHTTR DSSSLSSCTS GVLEERSPAS 351 400 ENSP00000338258/1-356 RGPDRARAAV SRQ-PDKEFS FMDEEEEDEI RV ENSBTAP00000025446/1-347 RGPERAPAAL PAQPPDPEFS FMDEEEEDEI RV bmy_11003T0/1-356 RGPDRARATL PRQ-PDPEFS FMDEEEEDEI RV BACU011477/1-371 RGPDRARAAV PRQ-PDPEFS FMDEEEEDEI RV