KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:16 2014 Check: 00 .. Name: ENSP00000219596/1-781 Len: 898 Check: 7134 Weight: 1.00 Name: ENSBTAP00000025458/1-771 Len: 898 Check: 4413 Weight: 1.00 Name: ENSTTRP00000011050/1-761 Len: 898 Check: 5373 Weight: 1.00 Name: bmy_02760T0/1-738 Len: 898 Check: 8566 Weight: 1.00 Name: BACU009173/1-677 Len: 898 Check: 988 Weight: 1.00 // 1 50 ENSP00000219596/1-781 MAKTPSDHLL STLEELVPYD FEKFKFKLQN TSVQKEHSRI PRSQIQRARP ENSBTAP00000025458/1-771 MVRTRSDHLL YSLEELLPYD FEKFKFKLQN TSLEKEHLRI PRGQLQTAEP ENSTTRP00000011050/1-761 MAKTRSDHLL YSLEELVPYD FEKFKFKLQN TSLEKEHSRI PRGQLQTAKP bmy_02760T0/1-738 MAKTRSDHLL YSLEELVPYD FEKFKFKLQN TSLEKEHSRI PRGQLQTAKP BACU009173/1-677 MAKTRSDHLL YSLEELVPYD FEKFKFKLQN TSLEKEHSRI PRGQLQTAKP 51 100 ENSP00000219596/1-781 VKMATLLVTY YGEEYAVQLT LQVLRAINQR LLAEELHRAA IQEYSTQENG ENSBTAP00000025458/1-771 VKLASLMVNH YGEEYAVQLT LQVLRAINQH LLAEELHQVI SPECRIQESD ENSTTRP00000011050/1-761 VKLATLLVTH YGEEDAVRLT LQVLRAINQH LLAEELNSAI GPGCQVKESD bmy_02760T0/1-738 VKLATLLVTH YGEEDAVRLT LQVLRAINQH LLAEELNRAI GPGCQVKESD BACU009173/1-677 VKLATLLVTH YGEEDAVRLT LQVLRAINQH LLAEELNRAI SPGCQVKESD 101 150 ENSP00000219596/1-781 TDDSAASSSL GENKPRSLKT PDHPEGNEGN GPRPYGGGAA S--------- ENSBTAP00000025458/1-771 TDSSAMSGSS GEMKPKSLKT PD---GLEGD KQRQSADGAG CPPSSQPGAG ENSTTRP00000011050/1-761 TDSSAMSGSS GEIKPKSLKI PD---GLEGD KQRQSGDGAG C--------- bmy_02760T0/1-738 TDSSAMSGSS GEIKPKSLKI PD---GLEGD KQQQSGDGAG C--------- BACU009173/1-677 TDSSAMSGSS GEIKPKSLKI PD---GLEGD KQQQSGDGAG C--------- 151 200 ENSP00000219596/1-781 -LRCSQPEAG RGLSRKPLSK RRE-KASEGL DAQGKPRTRS PALPGGRSPG ENSBTAP00000025458/1-771 SPPSSQPEAG RGPQKKPLGK QRDQKGSEGL EVQSKLGAKN TTLSSKRSPF ENSTTRP00000011050/1-761 -PPSIQPEAG RGPQKKPLGK QRDQKGSERL DVQGKPGARN TTLSSKRSPC bmy_02760T0/1-738 -PPSIQPEAG RGPQKKPLGK RRDQKGSEVL DVQGKPGARN TTLSSKRSPF BACU009173/1-677 -PPPIQPEAG RGPQKKPLGQ RRDQKGSEGL DVQGKPGARN TTLSSKRSPF 201 250 ENSP00000219596/1-781 PCR----ALE GGQAEVRLRR NASSAGRLQG LAG----GAP GQKECRPFEV ENSBTAP00000025458/1-771 LTKVPREKEK GSCPSVRLRR NASSAGRLQG LTSGSLAGSP GRKETKISEV ENSTTRP00000011050/1-761 PSK--PQGEK GSNVGVRLRR NASSAGRLQG LSW----VAL GRREFKISEA bmy_02760T0/1-738 PSK--PQGEK GSNAGVRLRR NASSAGRLQG LSSGSFAGSL GRKEFKISEA BACU009173/1-677 PSK--PQGEK GSNVGVRLRR NASSAGRLQG LSSGSFAGSL GRKEFKISEA 251 300 ENSP00000219596/1-781 YLPSGKMRPR SLEVTISTGE KAPANPEILL TLEEKTAANL DSATEPRARP ENSBTAP00000025458/1-771 YLPSGKKRPK SLELTISPEE TGPLNPEILL LQEKMNTENP SSATTASEVA ENSTTRP00000011050/1-761 YLPSGKKRPK SLEFTISSGE TEPLNPETLM LQEKMRCENP GSA------A bmy_02760T0/1-738 YLPSGKKRPK SLEFTISPGE TEPLNPETLL LQEKMRSENP GSA------A BACU009173/1-677 YLPSGKKRPK SLEFTISPGE TEPLNPETLL LQEKMRSENP GSA------A 301 350 ENSP00000219596/1-781 TPDGGASADL KEGPGNPEHS VT-------- ---------- ---------- ENSBTAP00000025458/1-771 TLKTGPTVTL EKGFRNPGHA TT-------- ---------- ---------- ENSTTRP00000011050/1-761 TLNTGATVAA EKGSRKPE-- ---------- ---------- ---------- bmy_02760T0/1-738 TLNTGATVAA EKGSRNPEHA MTLEGGALRN TLSSVSLAGK KIWEHPESTV BACU009173/1-677 TLNTGATVAA EKGSRNPEHA MTLEGGALRN TLSSVSLAGK KIWEHPESTV 351 400 ENSP00000219596/1-781 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025458/1-771 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011050/1-761 ---------- ---------- ---------- ---------- ---------- bmy_02760T0/1-738 PAEKSGTEAP KTSKTLEEVV GGVFHDPSNP EVPPSSGKKG PQNPEDLASL BACU009173/1-677 PAEKSGTEAP KTSKTLKEVV GGVLHDPSNP EVPPSS---- ---------- 401 450 ENSP00000219596/1-781 ------GRPP DTAASPRCHA QEGDPVDGTC VRDSCSFPEA VSGHPQASGS ENSBTAP00000025458/1-771 ------RRLQ DKAVCPLCRA QEGDPVGGSC VHISCSCS-A ASRDPEASLS ENSTTRP00000011050/1-761 -------RLQ DKAVCPLCCA QEGDPVGGSC VHVSCSCP-V ASRDPEVSRG bmy_02760T0/1-738 GIMTFAGRLQ DKAVCPLCRA QEGDPLGGSC VHVSCSCS-V ASRDPEASRG BACU009173/1-677 ------GRPQ DKAVCPLCRA QEGDPVGGSC VHVSCSCS-V ASRDPEASRG 451 500 ENSP00000219596/1-781 RSPGCPRCQD SHERKSPG-- ---------S LSPQPLPQCK RHLKQVQLLF ENSBTAP00000025458/1-771 RSSSCPRCQD LLPGKSHGSH EWQEGLQMAS LNPKSLPQCK RHMKQAQLLF ENSTTRP00000011050/1-761 YSSSCPQCQD LLPGKSHG-- ---------S LSPKSLPQCE RHMKQVQLLF bmy_02760T0/1-738 HSSSCPRCQD LLPGKSHGSL EWQDGLQMAS LSPKSLPQCE RHMKQVQLLF BACU009173/1-677 HSSSCPRCQD LLPGESHGSL KWQEGLQMAS LSPKSLPQCE RHMKQVQLLF 501 550 ENSP00000219596/1-781 CEDHDEPICL ICSLSQEHQG HRVRPIEEVA LEHKKKIQKQ LEHLKKLRKS ENSBTAP00000025458/1-771 CEDHGELICL ICRLSQEHRG HRVRPIEEAA LEYKEQIQKQ LDHLKELRKS ENSTTRP00000011050/1-761 CEDHGEPICL ICGLSQEHRG HRVRPIEEAA LEYKKQIQKQ LEHLKELRKS bmy_02760T0/1-738 CEDHGEPICL ICGLSQEHRG HRVRPIEEAA LEYKEQIQKQ LEHLKELRKS BACU009173/1-677 CEDHGEPICL ICGLSQEHRG HRVRPIEEAA LEYKEQIQKQ LGHLKELRKS 551 600 ENSP00000219596/1-781 GEEQRSYGEE KAVSFLKQTE ALKQRVQRKL EQVYYFLEQQ EHFFVASLED ENSBTAP00000025458/1-771 GEEQRSQGDK KTVNSLKQAE TQKQRIQYQL EQLCQFLEQQ ERLFVAWLEE ENSTTRP00000011050/1-761 GEEQRSQGDK KTANFLKQAE TQKQRIQYQL EQLCQFLEQQ EQLFVACLEE bmy_02760T0/1-738 GEEQRSQGDK KTANSLKQAE TQKQRIQYQL EQLCQFLEQQ EQLFVACLEE BACU009173/1-677 GEEQRSQGDK KTANSLKQAE TQKQRIQYQL EQLCQFLEQQ EQLFVACLEE 601 650 ENSP00000219596/1-781 VGQMVGQIRK AYDTRVSQDI ALLDALIGEL EAKECQSEWE LLQDIGDILH ENSBTAP00000025458/1-771 LGQTIGQVRE TYGTQRTRDI ALLDKLIGEL EAKQCQPEWE LMKDIGVTLH ENSTTRP00000011050/1-761 LGQTIGQVRE TYGTRVTGDI ALLDKLIGEL EAKQCQPEWE LMKDVRVTLH bmy_02760T0/1-738 LGQTIGQLRE TYGTRVTRDI ALLDKLIGEL EAKQCQPEWE LMKDIGVTLH BACU009173/1-677 LGQTIGQVRE TYGTRVTRDI ALLDKLIGEL EAKQCQPEWE LMKNIGVTLH 651 700 ENSP00000219596/1-781 RAKTVPVPEK WTTPQEIKQK IQLLHQKSEF VEKSTKYFSE TLRSEMEMFN ENSBTAP00000025458/1-771 RAKMVTVPEL WATPPEVKEK IHLLYQKSEF VEKRVKHFLE TLRSEVETFN ENSTTRP00000011050/1-761 RAKKVTVPEL WATPPEVKEK IHLLYQKSEF VEKRMRHFLE TLRSEMEMFN bmy_02760T0/1-738 RAKKVTVPEL WATPPEVKEK IHLLYQKSEF VEKRMRHFLE TLRSEMEMFN BACU009173/1-677 RAKKVTIPEL WATPPEVKEK IHLLYQKSQF VEKRMRHFLE TLRSEMEMFN 701 750 ENSP00000219596/1-781 VPEL--IGAQ AHAVNVILDA ETAYPNLIFS DDLKSVRLGN KWERLPDGPQ ENSBTAP00000025458/1-771 VAEL--IGGQ AHSVNVILEA ETVHSNLIFH QSLGE----K KCDHLPASP- ENSTTRP00000011050/1-761 VPEV--TGGQ A--LNVILEA EAAHPNLIFS DDLKSVRLGK KWDRLPASPE bmy_02760T0/1-738 ECETWKKSGT VYLLLPLLRS EGGRQDRV-- ---------- ---------- BACU009173/1-677 ---------- ---VNVILEA EAAHPNLIFH ---------- ---------- 751 800 ENSP00000219596/1-781 RFDSCIIVLG SPSFLSGRRY WEVEVGDKTA -WILGACKTS ISRKGNMTLS ENSBTAP00000025458/1-771 ---------- ------GKFY REVKVGDKPG -WVLGVCNAG TSSKENMTLS ENSTTRP00000011050/1-761 RFYS-IIALG SLSLLSSCHY -EVKVGDKTG -WVLGVCKAA TSSKENMALS bmy_02760T0/1-738 ---------- GPGCLQGSHE QQGEYGSLTR EWLLGRNDDE VK-------- BACU009173/1-677 ---------- ---------- ---------- -LL------- ---------- 801 850 ENSP00000219596/1-781 PENGYWVVIM MKENEYQASS VPPTRLLIKE PPKRVGIFVD YRVGSISFYN ENSBTAP00000025458/1-771 PENGHLACTL LQ-------- ---IQM--GE PCWHGGISVD YKMG-ISFYN ENSTTRP00000011050/1-761 PENSYWVEMM MK-NECQASN FPSTRM--RE PPRHVGIFLN YKTGDISFYT bmy_02760T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU009173/1-677 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000219596/1-781 VTARSHIYTF ASCSFSGPLQ PIFSPGTRDG GKNTAPLTIC PVGGQGPD ENSBTAP00000025458/1-771 VTAKSHI-TA TGYFPPGPLQ PILSPRTHDG EKNMDPLTIC PVGVATAS ENSTTRP00000011050/1-761 VTAKSHISTS IGFFSSGPLQ PIFSPRTHDG E-NMDPLNIR PVGGQGPH bmy_02760T0/1-738 ---------- ---------- ---------- ---------- -------- BACU009173/1-677 ---------- ---------- ---------- ---------- --------