KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:17 2014 Check: 00 .. Name: ENSP00000340796/1-582 Len: 607 Check: 2944 Weight: 1.00 Name: ENSBTAP00000025469/1-579 Len: 607 Check: 8154 Weight: 1.00 Name: ENSTTRP00000003972/1-584 Len: 607 Check: 1361 Weight: 1.00 Name: bmy_13678T0/1-534 Len: 607 Check: 213 Weight: 1.00 Name: BACU006377/1-530 Len: 607 Check: 2029 Weight: 1.00 // 1 50 ENSP00000340796/1-582 MDFEDDYTHS ACRNTYQGFN GMDRDYGPGS YG-------- ---------- ENSBTAP00000025469/1-579 MDFEDDYTHS ACRNTYQSFN GMDRDYGPGS YG-------- ---------- ENSTTRP00000003972/1-584 --MFSDYTHS ACRNTYQSFN GMDRDYGPGS YG-------- ---------- bmy_13678T0/1-534 MDFEDDYTHS ACRNTYQSFN GMDRDYGPGS YGGLTFKDIY LKILLLSASK BACU006377/1-530 ---------- ---------- -MDRDYGPGS YG-------- ---------- 51 100 ENSP00000340796/1-582 GMDRDYGHGS YGGQRSMDSY LNQSYGMDNH SGGGGGSRFG PYESYDSRSS ENSBTAP00000025469/1-579 GMDRDYGHGS YGGQRSMDSY LNQSYGMDNH SGGGGGSRFG PYESYDSRSS ENSTTRP00000003972/1-584 GMDRDYGHGS CGGQRSMDSY LNQSYGMDSH SGGGGGSRFG PYESYDSRSS bmy_13678T0/1-534 GMDRDYGHGS CGGQRSMDSY LNQSYGMDSH SGGGGGSRFG PYESYDSRSS BACU006377/1-530 GMDRDYGHGS CGGQRSMDSY LNQSYGMDSH SGGGGGSRFG PYESYDSRSS 101 150 ENSP00000340796/1-582 LGGRDLYRSG YGFNEPEQSR FGGSYGGRFE SSYRNSLDSF GGRNQGGSSW ENSBTAP00000025469/1-579 LGGRDLYRSG YGFNEPEQSR FGGSYGGRFE SSYRNSLDSF GGRNQGGSSW ENSTTRP00000003972/1-584 LGGRDLYRSG YGFNEPEQSR FGGSYGGRFE SSYRNSLDSF GGRNQGGSSW bmy_13678T0/1-534 LGGRDLYRSG YGFNEPEQSR FGGSYGGRFE SSYRNSLDSF GGRNQGGSSW BACU006377/1-530 LGGRDLYRSG YGFNEPEQSR FGGSYGGRFE SSYRNSLDSF GGRNQGGSSW 151 200 ENSP00000340796/1-582 EAPYSRSKLR PGFMEDRGRE NYSSYSSFSS PHMKPAPVGS RGRGTPAYPE ENSBTAP00000025469/1-579 EAPYSRSKLR PGFMEDRGRE NYSSYSSFSS PHMKPAPVGS RGRGTPAYPE ENSTTRP00000003972/1-584 EAPYSRSKLR PGFMEDRGRE NYSSYSSFSS PHMKPAPVGS RGRGTPAYPE bmy_13678T0/1-534 EAPYSRSKLR PGFMEDRGRE NYSSYSSFSS PHMKPAPVGS RGRGTPAYPE BACU006377/1-530 EAPYSRSKLR PGFMEDRGRE NYSSYSSFSS PHMKPAPVGS RGRGTPAYPE 201 250 ENSP00000340796/1-582 STFGSRNYDA FGGPSTGRGR GRGHMGDFGS IHRPGIVVDY QNKSTNVTVA ENSBTAP00000025469/1-579 STFGSRNYDA FGGPSTGRGR GRGHMSDFGS IHRPGIVVDY QNKPTNVTVA ENSTTRP00000003972/1-584 STFGSRNYDA FGGPSTGRGR GRGHMSDFGS IHRPGIVVDY QNKPTNVTVT bmy_13678T0/1-534 STFGSRNYDA FGGPSTGRGR GRGHMSDFGS IHRPGIVVDY QNKPTNVTVT BACU006377/1-530 STFGSRNYDA FGGPSTGRGR GRGHMSDFGS IHRPGIVVDY QNKPTNVTVT 251 300 ENSP00000340796/1-582 AARGIKRKMM QPFNKPSGTF IKKPKLAKPM EKISLSKSPT KTDPKNEEEE ENSBTAP00000025469/1-579 AARGIKRKMI QPFNKPGGTF IKKPKLAKPV EKMSLSKSPT KTDPKNEEEE ENSTTRP00000003972/1-584 AARGIKRKMM QPFNKPGGTF IKKPKLAKPV EKMSLSKSPX XXXXXXXXXX bmy_13678T0/1-534 AARGIKRKMM QPFNKPGGTF IKKPKLAKPV EKMSLSKSPS K--------- BACU006377/1-530 AARGIKRKMM QPFNKPGGTF IKKPKLAKPV EKMSLSKSPT KTDPKNEEEE 301 350 ENSP00000340796/1-582 KRRIEARREK QRRRREKNSE KYGDGYRMAF TCSFCKFRTF EEKDIELHLE ENSBTAP00000025469/1-579 KRRIEARREK QRRRREKNSE KYGDGYRMAF TCSFCKFRTF EEKDIELHLE ENSTTRP00000003972/1-584 KRRIEARREK QRRRREKNSE KYGDGYRMAF TCSFCKFRTF EEKDIELHLE bmy_13678T0/1-534 ---------- ---------- -------MAF TCSFCKFRTF EEKDIELHLE BACU006377/1-530 KRRIEARREK QRRRREKNSE KYGDGYRMAF TCSFCKFRTF EEKDIELHLE 351 400 ENSP00000340796/1-582 SSSHQETLDH IQKQTKFDKV VMEFLHECMV NKFKKTSIRK QQTNNQTEVV ENSBTAP00000025469/1-579 SASHQETLDH IQKQTKFDKV VMEFLHECMV NKFKKTSIRK QQTNNQTEAV ENSTTRP00000003972/1-584 SSSHQETLDH IQKQTKFDKV VMEFLHECMV NKFKKTSIRK QQTNNQTEVV bmy_13678T0/1-534 SSSHQETLDH IQKQTKFDKV VMEFLHECMV NKFKKTSIRK QQTNNQTEVV BACU006377/1-530 SSSHQETLDH IQKQTKFDKV VMEFLHECMV NKFKKTSIRK QQTNNQTEVV 401 450 ENSP00000340796/1-582 KIIEKDVMEG VTVDDHMMKV ETVHCSACSV YIPALHSSVQ QHLKSPDHIK ENSBTAP00000025469/1-579 KIIEKDVMEG VTADDHMMKV ETVHCSACSV YIPALHSSVQ QHLKSPDHIK ENSTTRP00000003972/1-584 KIIEKDVMEG VTADDHMMKV ETVHCSACSV YIPALHSSVQ QHLKSPDHIK bmy_13678T0/1-534 KIIEKDVMEG VTADDHMMK- ---------- ---------- ---------- BACU006377/1-530 KIIEKDVMEG VTADDHMMK- ---------- ---------- ---------- 451 500 ENSP00000340796/1-582 GKQAYKEQIK RESVLTATSI LNNPIVKARY ERFVKGENPF EIQDHSQDQQ ENSBTAP00000025469/1-579 GKQAYKEQIK RESVLTATSI LNNPIVKARY ERFIKGENPF EIQDHSQDQQ ENSTTRP00000003972/1-584 GKQAYKEQIK RESVLTATSI LNNPIVKARY ERFIKGENPF EIQDHSQDQQ bmy_13678T0/1-534 ---AYKEQIK RESVLTATSI LNNPIVKARY ERFIKGENPF EIQDHSQDQQ BACU006377/1-530 ----YKEQIK RESVLTATSI LNNPIVKARY ERFIKGENPF EIQDHSQDQQ 501 550 ENSP00000340796/1-582 IEGDEEDEEK IDEPIEEEED EDEEEEAEEV GEVEEVEEVE EVRE----GG ENSBTAP00000025469/1-579 IEGDEEEEEK IDEPVEEEEE EEEEE----- ---EEVGEVE EAEEVGEGGG ENSTTRP00000003972/1-584 IEGDEEEEEK IDEPIEEEEE EEEEEE-EEV GEVEEVEEVE EVEEVGEGGG bmy_13678T0/1-534 IEGDEEEEEK IDEPIEEEEE EEEEEE-EEV GEVEEVEEVE EVEEVGEGGG BACU006377/1-530 IEGDEEEEEK IDEPIEEEEE EEEEEE-EEV GEVEEVEEVE EVEEVGEGGG 551 600 ENSP00000340796/1-582 IEGEGNIQGV GE---GGEVG VVGEVEGVGE VEEVEELEEE TAKEEPADFP ENSBTAP00000025469/1-579 VEGVGDTEEG GDVEGEGEVG AVG--EGEGE GEGVGEVEEE EAKEEPVGFS ENSTTRP00000003972/1-584 VEGVGDTEEG GDVEGEGEVG AVE--EGEGE GEGVGEVEEE EAKEEPVSFP bmy_13678T0/1-534 VEGVGDTEEG GDIEGEGEVG AVE--EGEGE GEGVGEVEEE AAKEEPVGFP BACU006377/1-530 VEGVGDTEEG GDVEGEGEVG AVE--EGEGE GEGVGEVEEE AAKEEPVGFP 601 650 ENSP00000340796/1-582 VEQPEEN ENSBTAP00000025469/1-579 VDQAEEN ENSTTRP00000003972/1-584 VDQPEEN bmy_13678T0/1-534 XDQPEEN BACU006377/1-530 VDQPEEN