KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:18 2014 Check: 00 .. Name: ENSP00000347767/1-708 Len: 799 Check: 1823 Weight: 1.00 Name: ENSBTAP00000025471/1-715 Len: 799 Check: 9040 Weight: 1.00 Name: ENSTTRP00000001160/1-682 Len: 799 Check: 7982 Weight: 1.00 Name: bmy_09784T0/1-745 Len: 799 Check: 8970 Weight: 1.00 Name: BACU018462/1-684 Len: 799 Check: 3599 Weight: 1.00 // 1 50 ENSP00000347767/1-708 MDKYDVIKAI GQGAFGKAYL AKGKSDSKHC VIKEINFEKM PIQEKEASKK ENSBTAP00000025471/1-715 MDQYDMIKAI GEGAFGKAYL AQRKSDSEHC VIKEINFEKM PIQEKEASKK ENSTTRP00000001160/1-682 MDKYDVIKAI GEGAFGKAYL AKGKSDSKHC VIKEINFEKM PIQEKEASEK bmy_09784T0/1-745 MDKYDVIKAI GEGAFGKAYL AKGKSDSKHC VIKEINFEKH RMM------- BACU018462/1-684 MDKYDVIKAI GEGAFGKAYL AKGKSDSKHC VIKEINFEKM PIQEKEASKK 51 100 ENSP00000347767/1-708 EVILLEKMKH PNIVAFFNSF QENGRLFIVM EYCDGGDLMK RINRQRGVLF ENSBTAP00000025471/1-715 EVILLAKMKH PNIVTFFNSF QENNRLFIVM EYCDGGDLMK RIRRQRGVLF ENSTTRP00000001160/1-682 EVILLAKMKH PNIVTFFSSF QENNRLFIVM EYCDGGDLMK RIKKQRGVLL bmy_09784T0/1-745 ---------- PFLI------ -ENNRLFIEM EYCDGGDLMK RIRRQRGVLL BACU018462/1-684 EVILLAKMKH PNIVTFFSSF QENNRLFIVM EYCDGGDLMK RIKRQRGVLL 101 150 ENSP00000347767/1-708 SEDQILGWFV QISLGLKHIH DRKILHRDIK AQNIFLSKNG MVAKLGDFGI ENSBTAP00000025471/1-715 SEDQILSWFV QISLGLKHIH DRKVLHRDIK TQNIFLSKNG MVAKLGDFGI ENSTTRP00000001160/1-682 SEDQILSWFV QISLGLKHIH DRKILHRDIK TQNIFLSKNG MVAKLGDFGI bmy_09784T0/1-745 SEDQILSWFV QISLGLKHIH DRKILHRDIK TQNIFLSKNG MVAKLGDFGI BACU018462/1-684 SEDQILSWFV QISLGLKHIH DRKILHRDIK TQNIFLSKNG MVAKLGDFGI 151 200 ENSP00000347767/1-708 ARVLNNSMEL ARTCIGTPYY LSPEICQNKP YNNKTDIWSL GCVLYELCTL ENSBTAP00000025471/1-715 ARVLNNTMEL ARTCVGTPYY LSPEICQNKP YNNKTDIWSL GCVLYELCTL ENSTTRP00000001160/1-682 ARVLNNTMEL ARTCVGTPYY LSPEICQNKP YNNKTDIWSL GCVLYELCTL bmy_09784T0/1-745 ARVLNNTMEL ARTCVGTPYY LSPEICQNKP YNNKTDIWSL GCVLYELCTL BACU018462/1-684 ARVLNNTMEL ARTCVGTPYY LSPEICQNKP YNNKTDIWSL GCVLYELCTL 201 250 ENSP00000347767/1-708 KHPFEGNNLQ QLVLKICQAH FAPISPGFSR ELHSLISQLF QVSPRDRPSI ENSBTAP00000025471/1-715 RHPFEGNNLQ QLVLKICQAH VPPISPRFSR DLQFLLSQLF EVSPRDRPSI ENSTTRP00000001160/1-682 RHPXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09784T0/1-745 RHPFEGNNLH QLVLKICQAH VPPISPRFSH DLQSLISQLF EVSPRDRPSI BACU018462/1-684 RHPFEGNNLH QLVLKICQAH VPPVSPRFSH DLQSLISQLF EVSPRDRPSI 251 300 ENSP00000347767/1-708 NSILKRPFLE NLIPKYLTPE VIQEEFSHML ICRAGAPASR HAGKVVQKCK ENSBTAP00000025471/1-715 NSILKRPFLE NFIAKYLTPE VIHEEFSHLL LHKARPSASR PAGKVAPDSK ENSTTRP00000001160/1-682 XXXXXXXXXX XXXXXXXXXX VIQEEFNHTL RHKARSSASR HAEKVVPDFK bmy_09784T0/1-745 SSILKRPFLE NLIAKYLTPE VIQEEFNHTL RHKARSSASQ PAGKVVPDFK BACU018462/1-684 SSILKRPFLE NFIAKYLTPE VIQEEFNHTL RHKARSSASQ PAGKLVPDFK 301 350 ENSP00000347767/1-708 IQKVRFQGKC PPRSRISVPI KRNAILHRNE WRPPAGAQKA RSIKMIERPK ENSBTAP00000025471/1-715 IQNVRFQGKC LPRSRITVPN KRKDVLCRNE WRSPAGAQTP ISVKMVERPK ENSTTRP00000001160/1-682 MQKVRFQGKC LPRSR----- -RKDI-YRNE WRPPAGAQKP ISIKMVERPK bmy_09784T0/1-745 IQKVRFQGKC PPRSRISVPF KRKDILYRNE WRPPAGAQKP ISIKMVEGPK BACU018462/1-684 IQKVRFQGKC LPRSRISVPF KRKDILYRNE WRPPVGAQKP ISIKMVEGPK 351 400 ENSP00000347767/1-708 IAAVCGHYDY YYAQLDMLRR RAHKPSYHPI PQENTGVED- YGQETRHGPS ENSBTAP00000025471/1-715 LAAMCGHYDH FYAQLDLLRK RVHGPNYHHV PQKDTRDEES YDQEESHSPP ENSTTRP00000001160/1-682 LAAVCGHYDH YYDQLDLLRK RANGQNYHYV PQKDTRVEEN YNQEESHSPS bmy_09784T0/1-745 IAAVCGHYDH YYAQLDLLRK RANGQNYHYV PQKDTRVEEN YNQEESHSPS BACU018462/1-684 LAAVCGHYDH YYAQLDLLRK RANGQNYHYV PQKDTRVEEN YNQEESHSPS 401 450 ENSP00000347767/1-708 PSQWPAEYLQ RKFEAQQYKL KVEKQLGLRP SSAEPNYNQR QELRSNGEEP ENSBTAP00000025471/1-715 PGQWLAEYLQ RKCEAQQYKL KVEKQLGLRP SSAEPNDNQR QKLRSDAEGP ENSTTRP00000001160/1-682 SGQWLAEYLQ RRCEAQRHKL KVEKQLGIRP SSAEPNHNQR QKLRSNGEEP bmy_09784T0/1-745 PGQWLAEYLQ RKCEAQQHKL KVEKQLGIRP SSAEPNHNQR QKLRSNGEEP BACU018462/1-684 PGQWLAEYLQ RKCEAQQHKL KVEKQLGIRP SSAEPNHNQR QKLRSNGEEP 451 500 ENSP00000347767/1-708 RFQELPFRKN EMKEQEYWKQ LEEIRQQYHN DMKEIRKKMG REPEENSKIS ENSBTAP00000025471/1-715 RFWRLQFRRN EMKEQEYWKQ LEEIRQQYHH DMKEIRKKMG CELEEDSKMS ENSTTRP00000001160/1-682 GFQELQFRRN ERKEQEYWKQ LEEIRQQYHN DMKEIRKKME CELEEDSKIS bmy_09784T0/1-745 GFQELQFRRN ERKEQEYWKQ LEEIRQQYHN EVKEIRKKME XELEEDSTIS BACU018462/1-684 GFQELQFRRN ERKEQEYWKQ LEEIRQQYHN DVKEIRKKME CELEEDSTIS 501 550 ENSP00000347767/1-708 HKTYLVKKSN LPVHQDASEG EAPVQME--F RSCCPGWSAM ARSWLTATSA ENSBTAP00000025471/1-715 WKTYLVKKSD LPIPHEAPEE EASVQVMVIV RRCCVSHRAI KRSEFYFFSK ENSTTRP00000001160/1-682 HKTYLVKKSD LLIHQEALEE EAPV------ ---------- ---------- bmy_09784T0/1-745 HKTYLVKKSD LLIHQEAPEE EAPV------ ---------- ---------- BACU018462/1-684 HKTYLVKKSD LLIHQEAPEE EAPV------ ---------- ---------- 551 600 ENSP00000347767/1-708 SQDIEKDLKQ MRLQNTKESK NPEQKYKAKK GVKFEINLDK CISDENILQE ENSBTAP00000025471/1-715 FQDIERDLKQ IKPQNIKESK SSEQKHKAQR GLKFEINLNE CISDENTLQE ENSTTRP00000001160/1-682 -QDIERDLKQ IGLQNTKESK IPEQKHKAKR GIKFEINLDK CISDGDTLQE bmy_09784T0/1-745 -QDIERDLKQ IGLQNTKESK IPEQKHKAKR GVKFEINLDK CISDGDTLQE BACU018462/1-684 -QDIERDLKQ IGLKNTKESK IPEQKHKAKR GVKFEINLDK CISDEDILQE 601 650 ENSP00000347767/1-708 EEAMDIPNET LTFEDGMKFK EYECVKEHGD YTDKAFEKLH CPEAGFSTQT ENSBTAP00000025471/1-715 EEAVDILNET LTSEDGMKFM EYKCMKGQED YTDQAFETLC CPEAELCIPD ENSTTRP00000001160/1-682 EEAMDMLNET LTSEDDVKFK GYKCIKEHED YTDKAFEKLC CREAGLFIPD bmy_09784T0/1-745 EEAMDILNET LTFEDGIKFK EYKRIKEHED YTDKAFEELC CLEAGLFIPD BACU018462/1-684 EEAMDIVSET LTFEDGIKFK EYKCIKEHED YTDKAFEELC CLEAALFIPD 651 700 ENSP00000347767/1-708 VAAVGNRRQW DGGAPQTLLQ MMAVADIT-- -STCPTGPDS ESVLS-VSRQ ENSBTAP00000025471/1-715 ATAAQYRRQW APGAPQTLLQ MMASADVTST CSTCSTMPEG EADISGLNHQ ENSTTRP00000001160/1-682 AAAAEDRRQW DAGSPQTLLQ MMATADIT-- -STCSTVPEG EADISGTNCQ bmy_09784T0/1-745 AAAAEDRRQW DAGPPQTLLQ MMAAADVT-- -STGSTVPEG EADISGTNCQ BACU018462/1-684 AAAAEDRRQW DAGPPQTLLQ MMATADVT-- -STGSTVPEG EADISGTNCQ 701 750 ENSP00000347767/1-708 EGKTKDP--- -YSPVLILM- ---------- ---------- ---------- ENSBTAP00000025471/1-715 QEEREAPDTA VFTPN----- ---------- ---------- ---------- ENSTTRP00000001160/1-682 QEESEAPKAA VFTPVLTLT- ---------- ---------- ---------- bmy_09784T0/1-745 QEESEAPKAA VFTPNAMGPL KQWLPKEDEG KVEVASDIEV DEEQPEPRSD BACU018462/1-684 QEESEAPKAA VFTP------ ---------- ---------- ---------- 751 800 ENSP00000347767/1-708 ---------- ---------- ---------- ---------- --------- ENSBTAP00000025471/1-715 ---------- ---------- ---------- ---------- --------- ENSTTRP00000001160/1-682 ---------- ---------- ---------- ---------- --------- bmy_09784T0/1-745 DDDTNFEESE DELRNEVVES LEKLSTSKEA EKXEEVSSSS KDAEKKERG BACU018462/1-684 ---------- ---------- ---------- ---------- ---------