KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:26:22 2014 Check: 00 .. Name: ENSP00000310722/1-346 Len: 355 Check: 6719 Weight: 1.00 Name: ENSBTAP00000025483/1-333 Len: 355 Check: 7447 Weight: 1.00 Name: bmy_18445T0/1-346 Len: 355 Check: 5004 Weight: 1.00 Name: BACU002325/1-348 Len: 355 Check: 4696 Weight: 1.00 // 1 50 ENSP00000310722/1-346 MPSPLALRPY LRSEFSP-SV DARPCSSPSE -----LP--- AKLLLGATLP ENSBTAP00000025483/1-333 MPSPLPRRPH LPGDLSPSSG DSRPCSSPCE ---------- ---LLGRIPP bmy_18445T0/1-346 MPSPLPRRPH LPGDRSP-SG DSRPCSSPCE -----LPGPA GRLFAGGTPP BACU002325/1-348 MPSPLPRRPH LPXXXXX-XX XXXXXXXXXX XXXXXXX--- XXXXXXXXXX 51 100 ENSP00000310722/1-346 RAPRLPRRLA WCSIDWEQVC LLQRLGAGGF GSVYKATYRG VPVAIKQVNK ENSBTAP00000025483/1-333 RARRLRRRLA WCSIDWEQVC LLRRLGAGGF GSVYEATYHG VRVAVKQVSR bmy_18445T0/1-346 RAPRLPRRLA WCSIDWEQVR LQRRLGAGGF GSVYKATYHG VPVAIKQVSK BACU002325/1-348 XXXXXXXXXX XXSIDWEKVR LQRRLGAGGF GCVYKATYHG VPVAIKQVSK 101 150 ENSP00000310722/1-346 CTKNRLASRR SFWAELNVAR LRHDNIVRVV AASTRTPAGS NSLGTIIMEF ENSBTAP00000025483/1-333 CSKNPRASRR SFWAELNAAR LCHANIVRVL AASTHPPPGF DSLGTVIMEF bmy_18445T0/1-346 RTKNRLASRR SFWAELNVAR LRHANIVRVV AASTRAPSGF DSLGTIIMEF BACU002325/1-348 RTKNRLASRR SFWAELNVAR LRHANIVRVV AASTRAPAGF DSLGTIIMEF 151 200 ENSP00000310722/1-346 GGNVTLHQVI YGAAGHPEGD AGEPHCRTGG QLSLGKCLKY SLDVVNGLLF ENSBTAP00000025483/1-333 GGNITLHQVI YGPTGCP-GD SG-------M QLGLERCLKY SLDVVSGLLF bmy_18445T0/1-346 GGDVTLHQVI YGATRCP-ED HG-PACGAGA QLGLEKCLKY SLDVVSGLLF BACU002325/1-348 GGDVTLHQVI YGATGCP-ED HG-PACGAAA QLGLEKCLKY SLDVVSGLLF 201 250 ENSP00000310722/1-346 LHSQSIVHLD LKPANILISE QDVCKISDFG CSEKLEDLLC FQTPSYPLGG ENSBTAP00000025483/1-333 LHAQSIVHLD LKPANILISE QDVCKIGDFG CSARLDDLRS PRTPHH-LGG bmy_18445T0/1-346 LHSQSIVHLD LKPANILISE QDVCKIGDFG CSARLEDVPC LRTPHH-LGG BACU002325/1-348 LHSQNVVHLD LKPANVLISE QDVCKIGDFG CSARLEDVPC LRTPHH-LGG 251 300 ENSP00000310722/1-346 TYTHRAPELL KGEGVTPKAD IYSFAITLWQ MTTKQAPYSG ERQHILYAVV ENSBTAP00000025483/1-333 TYTHRAPELL KGEPVTPKAD IYSFAITLWQ MSTREAPFSG ERQHVLYAVV bmy_18445T0/1-346 TYTHRAPELL KGEPVTPRAD IYSFAITLWQ MTTREAPYSG ERQHVLYAVV BACU002325/1-348 TYTHRAPELL KGEPVTPRAD IYSFAITLWQ MTTREAPYSG ERQHVLYAVV 301 350 ENSP00000310722/1-346 AYDLRPSLSA AVFEDSLPGQ RLGDVIQRCW RPSAAQRPSA RLLLVDLTSL ENSBTAP00000025483/1-333 AYHLRPALRA PIFTDSVPRK TLAGIVQRCW AALAPERPSA ELLLGDLHAL bmy_18445T0/1-346 AYDLRPALSA AVFTASIPGK KLENVIQRCW RASASQRPSA ELLLVDLRAL BACU002325/1-348 AYDLRPALSA AVFTASIPGK KLENIIQRCW RASASQRPSA ELLLVDLRAL 351 400 ENSP00000310722/1-346 KAELG ENSBTAP00000025483/1-333 KEELG bmy_18445T0/1-346 QAELH BACU002325/1-348 QAELG