KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:23 2014 Check: 00 .. Name: ENSP00000332576/1-916 Len: 984 Check: 5906 Weight: 1.00 Name: ENSTTRP00000009699/1-794 Len: 984 Check: 2015 Weight: 1.00 Name: ENSBTAP00000025485/1-916 Len: 984 Check: 1115 Weight: 1.00 Name: bmy_01594T0/1-620 Len: 984 Check: 7032 Weight: 1.00 Name: BACU003323/1-878 Len: 984 Check: 2450 Weight: 1.00 // 1 50 ENSP00000332576/1-916 MGKAAAPSRG GGCGGRSRGL SSLFTVVPCL SCHTAAPGMS ASTSGSGPEP ENSTTRP00000009699/1-794 MGKAAALCRG GGCGGRSRGL SSFFTVVPCL SCHTAAPSMS ASTPGSEPEP ENSBTAP00000025485/1-916 MGKAAALCRG SGCGGRSRGL SSLFTVVPCL SCHTAAPSMN APTPGSGPEP bmy_01594T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU003323/1-878 ---------- ---------- ---------- --------MS ASTPGSEPEP 51 100 ENSP00000332576/1-916 KPQPQPVPEP ERGPLSEQVS EAVSEAVPRS EPVSETTSEP EPGAGQPSEL ENSTTRP00000009699/1-794 KPQHQAVPQP KRDLVSEQVS EPVSEPVPGS EPESRKMSEP RPGFKQELEL ENSBTAP00000025485/1-916 KPQLQPVPQP QRELVSEQVL EPVSERAPGS EPEPKKMSEP RPGFRQELEL bmy_01594T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU003323/1-878 KPRHQPVPQP KRDLVSEQES EPVFETVPGS EPESRKMSEP RPGFKQELEL 101 150 ENSP00000332576/1-916 LQGSRPGS-- --ESSSGVGA GPFTKAASE- --PLSRAVGS ATFLRPESGS ENSTTRP00000009699/1-794 LQGLGTGSGH REELGSSLGA GPFTKAPTEQ VLALGPVVGS VPLTKLESGL ENSBTAP00000025485/1-916 LPALGTGSGP REEWGSNPGP GPPTKAPFEQ VPALGPAVGS VPLIKPESGL bmy_01594T0/1-620 ---MGPGEGQ QHQ------- ---------- ---------- ---------- BACU003323/1-878 LQGLGTGSGP REELGSSLGA GPFTKTPSEQ VLTLGPVVGS VPLTKLESGL 151 200 ENSP00000332576/1-916 LPALKPLPLL RPGQAKTPLG VPMSGTGTTS SAPLALLPLD SFEGWLLKWT ENSTTRP00000009699/1-794 LPASKP---Q RPGQVKTHLG APVPGSGSPS ALPMVSLPLD SFKGWLLKWT ENSBTAP00000025485/1-916 LPASKD---P RPGQVKTHLG MAVPRSSSPG VVPMVSLPLD NFKGWLLKWT bmy_01594T0/1-620 ---------R KPAQ----LG M--------- ---------- ---------- BACU003323/1-878 LPASKA---P RPGQVKTHLG APVPGSGTPS ALPMVSLPLD SFKGWLLKWT 201 250 ENSP00000332576/1-916 NYLKGYQRRW FVLGNGLLSY YRNQGEMAHT CRGTINLSTA HIDTEDSCGI ENSTTRP00000009699/1-794 NYLKGYQRRW FVLSNGLLSY YRNQGEMAHT CRGTINLFTA HFDTEDSCGI ENSBTAP00000025485/1-916 NYLKGYQRRW FVLSNGLLSY YRNQGEMAHT CRGTINLFTA HFDTEDSCGI bmy_01594T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU003323/1-878 NYLKGYQRRW FVLSNGLLSY YRNQGEMAHT CRGTINLFTA HFDTEDSCGI 251 300 ENSP00000332576/1-916 LLTSGARSYH LKASSEVDRQ QWITALELAK AKAVRVMNTH SDDSGDDDEA ENSTTRP00000009699/1-794 VLTSGGRTYH LKAGSEVERQ QWITALELAK AKAVRLMSSQ SDDSGDDEDE ENSBTAP00000025485/1-916 VLTSGGRTYH LKAGSEVERQ QWITALELAK ARAVRMMSNH SDDSGDDEDG bmy_01594T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU003323/1-878 VLTSGGRTYH LKAGSEVERQ QWIAALELAK AKAVRLMGSQ SDDSGDDEDG 301 350 ENSP00000332576/1-916 T-TPADKSEL HHTLKNLSLK LDDLSTCNDL IAKHGAALQR SLTELDGLKI ENSTTRP00000009699/1-794 TASPADKSEL HDTIKKLSLK LDDLSTCNEL VAKHGVALQR SLSELDGLRI ENSBTAP00000025485/1-916 TPSPADKSEL HSTIKSLSLK LDDLSTCNEL VAKHGVALQR SLNELDGLRI bmy_01594T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU003323/1-878 PPSPADKSEL HDTIKKLSLK LDDLSTCNEL VAKHGVALQR SLSELDGLRI 351 400 ENSP00000332576/1-916 PSESGEKLKV VNERATLFRI TSNAMINACR DFLELAEIHS RKWQRALQYE ENSTTRP00000009699/1-794 PCESGEKLKA VSERATLFRI TSNAMINXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000025485/1-916 PAESSEKLKA VNERATLFRI TSNAMINACR DFLELAETHS RKWQRALQYE bmy_01594T0/1-620 ---------- ---------- -------DTR DFLELAETHS RKWQRALQYE BACU003323/1-878 PCESGEKLKA VNERATLFRI TSNAMINACR DFLELAETHS RKWQRALQYE 401 450 ENSP00000332576/1-916 QEQRVHLEET IEQLAKQHNS LERAFHSAPG RPANPSKSFI EGSLLTPKGE ENSTTRP00000009699/1-794 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXSPCLVSQS ENSBTAP00000025485/1-916 QEQRVHLEET IEQLAKQHNS LERAFRSAPG RAANPSKSFS EGSLFTSKAE bmy_01594T0/1-620 QEQRVRLEET IEQLAKQHNS LERALRSAPG RAASPTKSFS EGSLLTTKGE BACU003323/1-878 QEQRVHLEET IEQLAKQHNS LERAFRSAPG RAANPTKSFS EGSLLTTKGE 451 500 ENSP00000332576/1-916 DSEEDEDTEY FDAMEDSTSF ITVITEAKED SRKAEGSTGT SSVDWSSADN ENSTTRP00000009699/1-794 PDEEDEDTEY FDAMEDSTSF ITVITEPKED SRKAEGGT-T GSVEWTS-DN ENSBTAP00000025485/1-916 DSEDDEDTEY FDAMEDAASF ITVTTEPSED -GKAEAGT-A GSVEWTA-DN bmy_01594T0/1-620 DSEEDEDTEY FDAMEDSTSF ITVITEPKED -RKAESGT-T GSVEWTS-DN BACU003323/1-878 DSEEDEDTEY FDAMEDSTSF ITVITEPKED -RKAESRT-T GSVEWTS-DN 501 550 ENSP00000332576/1-916 VLDGASLVPK GSSKVKRRVR IPNKPNYSLN LWSIMKNCIG RELSRIPMPV ENSTTRP00000009699/1-794 VLDSTSLVCQ GPPKVKRRVR IPDKPNYSLN LWSIMKNCIG RELSKIPMPV ENSBTAP00000025485/1-916 VLDGASPVPQ GPPKVKRRVR IPDKPNYSLN LWSIMKNCIG RELSKIPMPV bmy_01594T0/1-620 VLDSTSLVPQ GPPKVKRRVR IPDKPNYSLN LWSIMKNCIG RELSKIPMPV BACU003323/1-878 VLDSTSLVPQ GPPKVKRRVR IPDKPSYSLN LWSIMKNCIG RELSKIPMPV 551 600 ENSP00000332576/1-916 NFNEPLSMLQ RLTEDLEYHH LLDKAVHCTS SVEQMCLVAA FSVSSYSTTV ENSTTRP00000009699/1-794 NFNEPLSMLQ RLTEDLEYHH LLDKAVHCTS SVEQMCLVAA FSVSSYSTTV ENSBTAP00000025485/1-916 NFNEPLSMLQ RLTEDLEYHR LLDAAARCGS TVEQMCLVAA FSVSSYSTTV bmy_01594T0/1-620 NFNEPLSMLQ RLTEDLEYHH LLDKAVHCTS SVEQMCLVAA FSVSSYSTTV BACU003323/1-878 NFNEPLSMLQ RLTEDLEYHH LLDKAVHCTS SVEQMCLVAA FSVSSYSTTV 601 650 ENSP00000332576/1-916 HRIAKPFNPM LGETFELDRL DDMGLRSLCE QVSHHPPSAA HYVFSKHGWS ENSTTRP00000009699/1-794 HRIAKPFNPM LGETFELDRL DDMGLRSLCE QVSHHPPSAA HYVFSKHGWS ENSBTAP00000025485/1-916 HRIAKPFNPM LGETFELDRL DDMGLRSLCE QVSHHPPSAA HYVFSKHGWS bmy_01594T0/1-620 HRIAKPFNPM LGETFELDRL DDMGLRSLCE QVSHHPPSAA HYVFSKHGWS BACU003323/1-878 HRIAKPFNPM LGETFELDRL DDMGLRSLCE QVSHHPPSAA HYVFSKHGWS 651 700 ENSP00000332576/1-916 LWQEITISSK FRGKYISIMP LGAIHLEFQA SGNHYVWRKS TSTVHNIIVG ENSTTRP00000009699/1-794 LWQEITISSK FRGKYLSIMP LGAIHLEFQA SGNHYVWRKS TSTVHNIIVG ENSBTAP00000025485/1-916 LWQEITIASK FRGKYLSIMP LGAIHLEFQA SGNHYVWRKS TSTVHNIIVG bmy_01594T0/1-620 LWQEITISSK FRGKYLSIMP LGAIHLEFQA SGNHYVWRKS TSTVHNIIVG BACU003323/1-878 LWQEITISSK FRGKYLSIMP LGAIHLEFQA SGNHYVWRKS TSTVHNIIVG 701 750 ENSP00000332576/1-916 KLWIDQSGDI EIVNHKTNDR CQLKFLPYSY FSKEAARKVT GVVSDSQGKA ENSTTRP00000009699/1-794 KLWIDQTGDV EIVNHKTKDR CQLKFLPYSY FSKEVARKVT GVVSDSQGKA ENSBTAP00000025485/1-916 KLWIDQTGDV EIVNHKTKDR CQLKFLPYSY FSKEVARKVT GVVSDSQGKA bmy_01594T0/1-620 KLWIDQTGDV EIVNHKTKDR CQLKFLPYSY FSKEVARKVT GVVSDSQGKA BACU003323/1-878 KLWIDQTGDV EIVNHKTKDR CQLKFLPYSY FSKEVARKVT GVVSDSQGKA 751 800 ENSP00000332576/1-916 HYVLSGSWDE QMECSKVMHS SPSSPSSDGK QKTVYQTLSA KLLWKKYPLP ENSTTRP00000009699/1-794 HYVLSGSWDE QMECAKIVQS SPSSPSLDGK QKTVYQTLPA KLMWKKYPL- ENSBTAP00000025485/1-916 HYVLSGSWDE QMECAKIVQS SPSSPSSDGK QKTVYQTLPA KLLWKKHPLP bmy_01594T0/1-620 HYVLSGSWDE QMECAKIVQS SPSSPSLDGK QKTVYQTLPA KLMWKKYPLP BACU003323/1-878 HYVLSGSWDE QMECAKIVQS SPSSPSLDGK QKTVYQTLPA KLMWKKYPLP 801 850 ENSP00000332576/1-916 ENAENMYYFS ELALTLNEHE EGVAPTDSRL RPDQRLMEKG RWDEANTEKQ ENSTTRP00000009699/1-794 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025485/1-916 DNAENMYYFS ELALTLNENE EGVAPTDSRL RPDQRLMEKG HWDEANTEKQ bmy_01594T0/1-620 DNAENMYYFS KLALTLNEHE EGVAPTDSRL RPDQRLMEKG HWDEANTEKQ BACU003323/1-878 DNAENMYYFS ELALTLNEHE EGVAPTDSRL RPDQRLMEKG HWDEANTEKQ 851 900 ENSP00000332576/1-916 RLEEKQRLSR RRRLEACGPG SSCSSEEEKE ADAYTPL--- ---------- ENSTTRP00000009699/1-794 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025485/1-916 RLEEKQRANR RRRLEACSRG --CGVDEEKE AEVYVPL--- ---------- bmy_01594T0/1-620 RLEEQQRVNR RRRLEACSRG --CGAEEGEA GGEGDPREPG QRERGRGSPR BACU003323/1-878 RLEEKQRVNR RRRLEACSRG --CGAEEEKE AEVYVPL--- ---------- 901 950 ENSP00000332576/1-916 -WFEKR-LDP LTGEMACVY- ------KGGY ---------- -------WEA ENSTTRP00000009699/1-794 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025485/1-916 -WFEKK-LDP LTGEMACVY- ------KGGY ---------- -------WEA bmy_01594T0/1-620 NWEEMRGLEE AEGERGGSLG AGRGAGEGGH PRSEEEGQQE RGQGVVSWGA BACU003323/1-878 -WFEKR-LDP VTGETACVY- ------KGGY ---------- -------WEA 951 1000 ENSP00000332576/1-916 KEKQDWHMCP NIF------- ---------- ---- ENSTTRP00000009699/1-794 ---------- ---------- ---------- ---- ENSBTAP00000025485/1-916 KERQDWHMCP NIF------- ---------- ---- bmy_01594T0/1-620 GRRQAARPPA HCAAQQRRRP KCTCRCGLRR GWTR BACU003323/1-878 KEKQDWHMCP NIF------- ---------- ----