KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:25 2014 Check: 00 .. Name: bmy_07966T0/1-523 Len: 557 Check: 2162 Weight: 1.00 Name: BACU016434/1-549 Len: 557 Check: 6272 Weight: 1.00 Name: ENSP00000299300/1-535 Len: 557 Check: 2522 Weight: 1.00 Name: ENSBTAP00000025496/1-535 Len: 557 Check: 4744 Weight: 1.00 Name: ENSTTRP00000011893/1-535 Len: 557 Check: 4320 Weight: 1.00 // 1 50 bmy_07966T0/1-523 MAARPQRPFV LLAVVASLSL APVNIFKAGA DEERAETARL SSFVGAIAIG BACU016434/1-549 MAARPQRSLV LLAVVASLSL APVNIFKAGA DEERAETARL SSFVGAIAIG ENSP00000299300/1-535 ---------- ----MASLSL APVNIFKAGA DEERAETARL TSFIGAIAIG ENSBTAP00000025496/1-535 ---------- ----MASLSL APVNIFKAGA DEERAETARL SSFIGAIAIG ENSTTRP00000011893/1-535 ---------- ----MASLSL APVNIFKAGA DEERAETARL SSFVGAIAIG 51 100 bmy_07966T0/1-523 DLVKSTLGPK GMDKILLSSG RDASLMVTND GATILKNIGV DNPAAKVLVD BACU016434/1-549 DLVKSTLGPK GMDKILLSSG RDASLMVTND GATILKNIGV DNPAAKVLVD ENSP00000299300/1-535 DLVKSTLGPK GMDKILLSSG RDASLMVTND GATILKNIGV DNPAAKVLVD ENSBTAP00000025496/1-535 DLVKSTLGPK GMDKILLSSG RDASLMVTND GATILKNIGV DNPAAKVLVD ENSTTRP00000011893/1-535 DLVKSTLGPK GMDKILLSSG RDASLMVTND GATILKNIGV DNPAAKVLVD 101 150 bmy_07966T0/1-523 MSRVQDDEVG DGTTSVTVLA AELLREAESL IAKKIHPQTI IAGWREATKA BACU016434/1-549 MSRVQDDEVG DGTTSVAVLA AELLREAESL IAKKIHPQTI IAGWREATKA ENSP00000299300/1-535 MSRVQDDEVG DGTTSVTVLA AELLREAESL IAKKIHPQTI IAGWREATKA ENSBTAP00000025496/1-535 MSRVQDDEVG DGTTSVTVLA AELLREAESL IAKKIHPQTI IAGWREATKA ENSTTRP00000011893/1-535 MSRVQDDEVG DGTTSVTVLA AELLREAESL IAKKIHPQTI IAGWREATKA 151 200 bmy_07966T0/1-523 ARQALLNSAV DHGSDEVKFR QDLMNIAGTT LSSKLLTHHK DHFTKLAVEA BACU016434/1-549 ARQALLNSAV DHGSDEVKFR QDLMNIAGTT LSSKLLTHHK DHFTKLAVEA ENSP00000299300/1-535 AREALLSSAV DHGSDEVKFR QDLMNIAGTT LSSKLLTHHK DHFTKLAVEA ENSBTAP00000025496/1-535 ARQALLNSAV DHGSDEVKFR QDLMNIAGTT LSSKLLTHHK DHFTKLAVEA ENSTTRP00000011893/1-535 ARQALLNSAV DHGSDEVKFR QDLMNIAGTT LSSKLLTHHK DHFTKLAVEA 201 250 bmy_07966T0/1-523 VLRLKGSGNL EAIHVIKKLG GSLADSYLDE GFLLDKKIGV NQPKRIENAK BACU016434/1-549 VLRLKGSGNL EAIHVIKKLG GSLADSYLDE GFLLDKKIGV NQPKRIENAK ENSP00000299300/1-535 VLRLKGSGNL EAIHIIKKLG GSLADSYLDE GFLLDKKIGV NQPKRIENAK ENSBTAP00000025496/1-535 VLRLKGSGNL EAIHVIKKLG GSLADSYLDE GFLLDKKIGV NQPKRIENAK ENSTTRP00000011893/1-535 VLRLKGSGNL EAIHVIKKLG GSMVDSYLDE GFLLDKKIGV NQPKRIENAK 251 300 bmy_07966T0/1-523 ILIANTGMDT DKIKIFGSRV RVDSTAKVAE IEHAEKEKMK EKVERILKHG BACU016434/1-549 ILIANTGMDT DKIKIFGSRV RVDSTAKVAE IEHAEKEKMK EKVERILKHG ENSP00000299300/1-535 ILIANTGMDT DKIKIFGSRV RVDSTAKVAE IEHAEKEKMK EKVERILKHG ENSBTAP00000025496/1-535 ILIANTGMDT DKIKIFGSRV RVDSTAKVAE IEHAEKEKMK EKVERILKHG ENSTTRP00000011893/1-535 ILIANTGMDT DKIKIFGSRV RVDSTAKVAE IEHAEKEKMK EKVERILKHG 301 350 bmy_07966T0/1-523 INCFINRQLL VWAVVYLYLE ERFNSTLNDG GLKYEKAN-- ---------G BACU016434/1-549 INCFINRQL- ----IYNYPE QLFGAA---G VMAIEHADFA GVERLALVTG ENSP00000299300/1-535 INCFINRQL- ----IYNYPE QLFGAA---G VMAIEHADFA GVERLALVTG ENSBTAP00000025496/1-535 INCFINRQL- ----IYNYPE QLFGAA---G VMAIEHADFV GVERLALVTG ENSTTRP00000011893/1-535 INCFINRQL- ----IYNYPE QLFGAA---G VMAIEHADFA GVERLALVTG 351 400 bmy_07966T0/1-523 GEIASTFDHP ELVKLGSCKL IEEVMIGEDK LIHFSGVALG EACTIVLRGA BACU016434/1-549 GEIASTFDHP ELVKLGSCKL IEEVMIGEDK LIHFSGVALG EACTIVLRGA ENSP00000299300/1-535 GEIASTFDHP ELVKLGSCKL IEEVMIGEDK LIHFSGVALG EACTIVLRGA ENSBTAP00000025496/1-535 GEIASTFDHP ELVKLGSCKL IEEVMIGEDK LIHFSGVALG EACTIVLRGA ENSTTRP00000011893/1-535 GEIASTFDHP ELVKLGSCKL IEEVMIGEDK LIHFSGVALG EACTIVLRGA 401 450 bmy_07966T0/1-523 TQQILDEAER SLHDALCVLA QTVKDSRTVY GGGCSEMLMA HAVTQLASRT BACU016434/1-549 TQQILDEAER SLHDALCVLA QTVKDSRTVY GGGCSEMLMA HAVTQLASRT ENSP00000299300/1-535 TQQILDEAER SLHDALCVLA QTVKDSRTVY GGGCSEMLMA HAVTQLANRT ENSBTAP00000025496/1-535 TQQILDEAER SLHDALCVLA QTVKDSRTVY GGGCSEMLMA HAVTQLASRT ENSTTRP00000011893/1-535 TQQILDEAER SLHDALCVLA QTVKDSRTVY GGGCSEMLMA HAVTQLASKT 451 500 bmy_07966T0/1-523 PGKEAVAMES YAKALRMISC LFSKYFP--- ---------- ---------- BACU016434/1-549 PGKEAVAMES YAKALRMLPT IIADNAGYDS ADLVAQLRAA HSEGNTAAGL ENSP00000299300/1-535 PGKEAVAMES YAKALRMLPT IIADNAGYDS ADLVAQLRAA HSEGNTTAGL ENSBTAP00000025496/1-535 PGKEAVAMES YAKALRMLPT IIADNAGYDS ADLVAQLRAA HSEGKTTAGL ENSTTRP00000011893/1-535 PGKEAVAMES YAKALRMLPT IIADNAGYDS ADLVAQLRAA HSEGNTTAGL 501 550 bmy_07966T0/1-523 DMKEGTIGDM AMLGITESFQ VKRQVLLSAA EAAEVILRVD NIIKAAPRKR BACU016434/1-549 DMKEGTIGDM AMLGITESFQ VKRQVLLSAA EAAEVILRVD NIIKAAPRYR ENSP00000299300/1-535 DMREGTIGDM AILGITESFQ VKRQVLLSAA EAAEVILRVD NIIKAAPRKR ENSBTAP00000025496/1-535 DMKEGTIGDM SVLGITESFQ VKRQVLLSAA EAAEVILRVD NIIKAAPRKR ENSTTRP00000011893/1-535 DMKEGTIGDM AMLGITESFQ VKRQVLLSAA EAAEVILRVD NIIKAAPRKR 551 600 bmy_07966T0/1-523 VPDHLPC BACU016434/1-549 NTLKNIS ENSP00000299300/1-535 VPDHHPC ENSBTAP00000025496/1-535 VPDHHPC ENSTTRP00000011893/1-535 VPDHLPC