KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:26:26 2014  Check: 00 ..

 Name: ENSTTRP00000006310/1-110  Len:    154  Check:  4649  Weight:  1.00
 Name: bmy_01166T0/1-114         Len:    154  Check:  5522  Weight:  1.00
 Name: BACU000863/1-101          Len:    154  Check:  8541  Weight:  1.00
 Name: ENSP00000216200/1-110     Len:    154  Check:  2812  Weight:  1.00
 Name: ENSBTAP00000025499/1-110  Len:    154  Check:  3052  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000006310/1-110  -----MSMTD F--------- ---------L NXXXXX---- -----XXXXX 
bmy_01166T0/1-114         MIAQKPSISK LTAQLGAGAA GAAEGSREGL TLQEIRLGAA ASAPWKPAGP 
BACU000863/1-101          -------MTD F--------- ---------L NAEDIT---- -----KAVGA 
ENSP00000216200/1-110     -----MSMTD L--------- ---------L NAEDIK---- -----KAVGA 
ENSBTAP00000025499/1-110  -----MSMTD L--------- ---------L HAEDIK---- -----KAVGA 


                          51                                                 100
ENSTTRP00000006310/1-110  X--------- ---XXVDSFD HKKFFQMVGL KKKSPDEVKK IFHILDKDES 
bmy_01166T0/1-114         LSALIFTPSL HPPTAVDSFD YKKFFQMVGL KKKSPDDVKK VFHILDKDKN 
BACU000863/1-101          F--------- ---TAVDSFD YKKFFQMVGL KKKSPDDVKK VFHILDKDKN 
ENSP00000216200/1-110     F--------- ---SATDSFD HKKFFQMVGL KKKSADDVKK VFHMLDKDKS 
ENSBTAP00000025499/1-110  F--------- ---TAVDSFD HKKFFQMVGL KKKSPEDVKK VFHILDKDKS 


                          101                                                150
ENSTTRP00000006310/1-110  GFIEEEELGS ILKAFSPDAR DLSAKEVKIL LAAGDKDGDD KIGVDEFTAL 
bmy_01166T0/1-114         GFIDEKELGS I--------- ---------- ---------- ----DEV--- 
BACU000863/1-101          GFIDEKELGT ILKAFSPDAR DLSAKEIKIL LAAGDKEGNE KIGVDGE--- 
ENSP00000216200/1-110     GFIEEDELGF ILKGFSPDAR DLSAKETKML MAAGDKDGDG KIGVDEFSTL 
ENSBTAP00000025499/1-110  GFIEEEELGF ILKGFSPDAR DLSVKETKTL LAAGDKDGDG KIGADEFSTL 


                          151                                                200
ENSTTRP00000006310/1-110  VAES 
bmy_01166T0/1-114         ---- 
BACU000863/1-101          ---- 
ENSP00000216200/1-110     VAES 
ENSBTAP00000025499/1-110  VAES