KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:29 2014 Check: 00 .. Name: ENSTTRP00000009444/1-1262 Len: 1271 Check: 4202 Weight: 1.00 Name: ENSP00000298229/1-1258 Len: 1271 Check: 7667 Weight: 1.00 Name: BACU004963/1-1230 Len: 1271 Check: 5376 Weight: 1.00 Name: bmy_03668T0/1-1271 Len: 1271 Check: 3800 Weight: 1.00 Name: ENSBTAP00000025510/1-1264 Len: 1271 Check: 7222 Weight: 1.00 // 1 50 ENSTTRP00000009444/1-1262 MASACGAPGP GGAGPGAALG SPAPAWYHRD LSRAAAEELL ARAGRDGSFL ENSP00000298229/1-1258 MASACGAPGP GGA-----LG SQAPSWYHRD LSRAAAEELL ARAGRDGSFL BACU004963/1-1230 MAILSGRRES RAASPG---- ---------- ---------- ---------- bmy_03668T0/1-1271 MASACGAPGP GGAGPGAALG SPAPAWYHRD LSRAAAEELL ARAGRDGSFL ENSBTAP00000025510/1-1264 MASACGAPGP GGAGPGAALG SPAPAWYHRD LSRAAAEELL ARAGRDGSFL 51 100 ENSTTRP00000009444/1-1262 VRDSESVAGA FALCVLYQKH VHTYRILPDG EDFLAVQTSQ GVPVRRFQTL ENSP00000298229/1-1258 VRDSESVAGA FALCVLYQKH VHTYRILPDG EDFLAVQTSQ GVPVRRFQTL BACU004963/1-1230 -------KGA SEQPRRYQKH VHTYRILPDG EDFLAVQTSQ GVPVRRFQTL bmy_03668T0/1-1271 VRDSESVAGA FALCVLYQKH VHTYRILPDG EDFLAVQTSQ GVPVRRFQTL ENSBTAP00000025510/1-1264 VRDSESVAGA FALCVLYQKH VHTYRILPDG EDFLAVQTSQ GVPVRRFQTL 101 150 ENSTTRP00000009444/1-1262 GELIGLYAQP NQGLVCALLL PVEREREPDL PDDRDASDGE DEKPPLPPRS ENSP00000298229/1-1258 GELIGLYAQP NQGLVCALLL PVEGEREPDP PDDRDASDGE DEKPPLPPRS BACU004963/1-1230 GELIGLYAQP NQGLVCALLL PVEREREPDL PDDRDASDGE DEKPPLPPRS bmy_03668T0/1-1271 GELIGLYAQP NQGLVCALLL PVEREREPDL PDDRDASDGE DEKPPLPPRS ENSBTAP00000025510/1-1264 GELISLYAQP NQGLVCALLL PVEREREPDP PDDRDASDGE DEKPPLPPRS 151 200 ENSTTRP00000009444/1-1262 GSTSISAPLG PSSPLPAPET PTTPAAESAP NGLSTVSHEY LKGSYGLDLE ENSP00000298229/1-1258 GSTSISAPTG PSSPLPAPET PTAPAAESAP NGLSTVSHDY LKGSYGLDLE BACU004963/1-1230 GSTSISAPLG PSSPLPAPET PTTPAAESAP NGLSTVSHEY LKGSYGLDLE bmy_03668T0/1-1271 GSTSISAPLG PSSPLPAPET PTTPAAESAP NGLSTVSHEY LKGSYGLDLE ENSBTAP00000025510/1-1264 GSTSISAPMG PSSPPAAPET PTTPAAESAP NGLSTVSHEY LKGSYGLDLE 201 250 ENSTTRP00000009444/1-1262 AVRGGASNLP HLTRTLATSC RRLHSEVDKV LSGLEILSKV FDQQSSPMVT ENSP00000298229/1-1258 AVRGGASHLP HLTRTLATSC RRLHSEVDKV LSGLEILSKV FDQQSSPMVT BACU004963/1-1230 AVRGGASNLP HLTRTLATSC RRLHSEVDKV LSGLEILSKV FDQQSSPMVT bmy_03668T0/1-1271 AVRGGASNLP HLTRTLATSC RRLHSEVDKV LSGLEILSKV FDQQSSPMVT ENSBTAP00000025510/1-1264 AVRGGASNLP HLTRTLATSC RRLHSEVDKV LSGLEILSKV FDQQSSPMVT 251 300 ENSTTRP00000009444/1-1262 RLLQQQNPPQ TGEQELESLV LKLSVLKDFL SGIQKKALKA LQDMSSTAPP ENSP00000298229/1-1258 RLLQQQNLPQ TGEQELESLV LKLSVLKDFL SGIQKKALKA LQDMSSTAPP BACU004963/1-1230 RLLQQQNPPQ TGEQELESLV LKLSVLKDFL SGIQKKALKA LQDMSSTAPP bmy_03668T0/1-1271 RLLQQQNPPQ TGEQELESLV LKLSVLKDFL SGIQKKALKA LQDMSSTAPP ENSBTAP00000025510/1-1264 RLLQQQNPPQ TGEQELESLV LKLSVLKDFL SGIQKKALKA LQDMSSTAPP 301 350 ENSTTRP00000009444/1-1262 TPLQPSTRKA KTIPVQAFEV KLDVTLGDLT KIGKSQKFTL SVDVEGGRLV ENSP00000298229/1-1258 AP-QPSTRKA KTIPVQAFEV KLDVTLGDLT KIGKSQKFTL SVDVEGGRLV BACU004963/1-1230 APLQPSTRKA KTIPVQAFEV KLDVTLGDLT KIGKSQKFTL SVDVEGGRLV bmy_03668T0/1-1271 APLQPSTRKA KTIPVQAFEV KLDVTLGDLT KIGKSQKFTL SVDVEGGRLV ENSBTAP00000025510/1-1264 APLQPSTRKA KTIPVQAFEV KLDVTLGDLT KIGKSQKFTL SVDVEGGRLV 351 400 ENSTTRP00000009444/1-1262 LLRRQRDSQE DWTTFTHDRI RQLIKSQRVQ NKLGVVFEKE KDRTQRKDFI ENSP00000298229/1-1258 LLRRQRDSQE DWTTFTHDRI RQLIKSQRVQ NKLGVVFEKE KDRTQRKDFI BACU004963/1-1230 LLRRQRDSQE DWTTFTHDRI RQLIKSQRVQ NKLGVVFEKE KDRTQRKDFI bmy_03668T0/1-1271 LLRRQRDSQE DWTTFTHDRI RQLIKSQRVQ NKLGVVFEKE KDRTQRKDFI ENSBTAP00000025510/1-1264 LLRRQRDSQE DWTTFTHDRI RQLIKSQRVQ NKLGVVFEKE KDRTQRKDFI 401 450 ENSTTRP00000009444/1-1262 FVSARKREAF CQLLQLMKNK HSKQDEPDMI SVFIGTWNMG SVPPPKNVTS ENSP00000298229/1-1258 FVSARKREAF CQLLQLMKNK HSKQDEPDMI SVFIGTWNMG SVPPPKNVTS BACU004963/1-1230 FVSARKREAF CQLLQLMKNK HSKQDEPDMI SVFIGTWNMG SVPPPKTVTS bmy_03668T0/1-1271 FVSARKREAF CQLLQLMKNK HSKQDEPDMI SVFIGTWNMG SVPPPKNVTS ENSBTAP00000025510/1-1264 FVSARKREAF CQLLQLMKNK HSKQDEPDMI SIFIGTWNMG SVPPPKNVTS 451 500 ENSTTRP00000009444/1-1262 WFTSKGLGKT LDEVTVTIPH DIYVFGTQEN SVGDREWLDL LRGSLKELTD ENSP00000298229/1-1258 WFTSKGLGKT LDEVTVTIPH DIYVFGTQEN SVGDREWLDL LRGGLKELTD BACU004963/1-1230 WFTSKGLGKT LDEVTVTIPH DIYVFGTQEN SVGDREWLDL LRGSLKELTD bmy_03668T0/1-1271 WFTSKGLGKT LDEVTVTIPH DIYVFGTQEN SVGDREWLDL LRGSLKELTD ENSBTAP00000025510/1-1264 WFTSKGLGKT LDEVTVTIPH DIYVFGTQEN SVGDREWLDL LRGGLKELTD 501 550 ENSTTRP00000009444/1-1262 LDYRPIAMQS LWNIKVAVLV KPEHENRISH VSTSSVKTGI ANTLXXXXXX ENSP00000298229/1-1258 LDYRPIAMQS LWNIKVAVLV KPEHENRISH VSTSSVKTGI ANTLGNKGAV BACU004963/1-1230 LDYRPIAMQS LWNIKVAVLV KPEHENRISH VSTSSVKTGI ANTLGNKGAV bmy_03668T0/1-1271 LDYRPIAMQS LWNIKVAVLV KPEHENRISH VSTSSVKTGI ANTLGNKGAV ENSBTAP00000025510/1-1264 LDYRPIAMQS LWNIKVAVLV KPEHENRISH VSTSSVKTGI ANTLGNKGAV 551 600 ENSTTRP00000009444/1-1262 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000298229/1-1258 GVSFMFNGTS FGFVNCHLTS GNEKTARRNQ NYLDILRLLS LGDRQLNAFD BACU004963/1-1230 GVSFMFNGTS FGFVNCHLTS GNEKTARRNQ NYLDILRLLS LGDRQLSAFD bmy_03668T0/1-1271 GVSFMFNGTS FGFVNCHLTS GNEKTARRNQ NYLDILRLLS LGDRQLSAFD ENSBTAP00000025510/1-1264 GVSFMFNGTS FGFVNCHLTS GNEKTARRNQ NYLDILRLLT LGDRQLSAFD 601 650 ENSTTRP00000009444/1-1262 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000298229/1-1258 ISLRFTHLFW FGDLNYRLDM DIQEILNYIS RKEFEPLLRV DQLNLEREKH BACU004963/1-1230 ISLRFTHLFW FGDLNYRLDM DIQVILNYIS RKEFEPLLRV DQLNLEREKH bmy_03668T0/1-1271 ISLRFTHLFW FGDLNYRLDM DIQEILNYIS RKEFEPLLRV DQLNLEREKH ENSBTAP00000025510/1-1264 ISLRFTHLFW FGDLNYRLDM DIQEILNYIS RKEFEPLLRV DQLNLEREKH 651 700 ENSTTRP00000009444/1-1262 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000298229/1-1258 KVFLRFSEEE ISFPPTYRYE RGSRDTYAWH KQKPTGVRTN VPSWCDRILW BACU004963/1-1230 KVFLRFSEEE ISFPPTYRYE RGSRDTYAWH KQKPTGVRTN VPSWCDRILW bmy_03668T0/1-1271 KVFLRFSEEE ISFPPTYRYE RGSRDTYAWH KQKPTGVRTN VPSWCDRILW ENSBTAP00000025510/1-1264 KVFLRFSEEE ISFPPTYRYE RGSRDTYAWH KQKPTGVRTN VPSWCDRILW 701 750 ENSTTRP00000009444/1-1262 XXXXXXXXXX XXXXXXXXXX XXXXPPVFGT FEVGVTSQFI -KKG------ ENSP00000298229/1-1258 KSYPETHIIC NSYGCTDDIV TSDHSPVFGT FEVGVTSQFI SKKG------ BACU004963/1-1230 KSYPETHIIC NSYGCTDDIV TSDHSPVFGT FEVGVTSQFI SKKGGYSGCA bmy_03668T0/1-1271 KSYPETHIIC NSYGCTDDIV TSDHSPVFGT FEVGVTSQFI SKKGGYSGCA ENSBTAP00000025510/1-1264 KSYPETHIIC NSYGCTDDIV TSDHSPVFGT FEVGVTSQFI SKKG------ 751 800 ENSTTRP00000009444/1-1262 -LSKTSDQAY IEFESIEAIV KTASRTKFFI EFYSTCLEEY KKSFENDAQS ENSP00000298229/1-1258 -LSKTSDQAY IEFESIEAIV KTASRTKFFI EFYSTCLEEY KKSFENDAQS BACU004963/1-1230 WLSKTSDQAY IEFESIEAIV KTASRTKFFI EFYSTCLEEY KKSFENDAQS bmy_03668T0/1-1271 WLSKTSDQAY IEFESIEAIV KTASRTKFFI EFYSTCLEEY KKSFENDAQS ENSBTAP00000025510/1-1264 -LSKTSDQAY IEFESIEAIV KTASRTKFFI EFYSTCLEEY KKSFENDAQS 801 850 ENSTTRP00000009444/1-1262 SDNINFLKVQ WSSRQLPTLK PILADIEYLQ DQHLLLTVKS MDGYESYGEC ENSP00000298229/1-1258 SDNINFLKVQ WSSRQLPTLK PILADIEYLQ DQHLLLTVKS MDGYESYGEC BACU004963/1-1230 SDNINFLKVQ WSSRQLPTLK PILADIEYLQ DQHLLLTVKS MDGYESYGEC bmy_03668T0/1-1271 SDNINFLKVQ WSSRQLPTLK PILADIEYLQ DQHLLLTVKS MDGYESYGEC ENSBTAP00000025510/1-1264 SDNINFLKVQ WSSRQLPTLN PILADIEYLQ DQHLLLTVKS MDGYESYGEC 851 900 ENSTTRP00000009444/1-1262 VVALKSMIGS TAQQFLTFLS HRGEETGNIR GSMKVRVPTE RLGTRERLYE ENSP00000298229/1-1258 VVALKSMIGS TAQQFLTFLS HRGEETGNIR GSMKVRVPTE RLGTRERLYE BACU004963/1-1230 VVALKSMIGS TAQQFLTFLS HRGEETGNIR GSMKVRVPTE RLGTRERLYE bmy_03668T0/1-1271 VVALKSMIGS TAQQFLTFLS HRGEETGNIR GSMKVRVPTE RLGTRERLYE ENSBTAP00000025510/1-1264 VVALKSMIGS TAQQFLTFLS HRGEETGNIR GSMKVRVPTE RLGTRERLYE 901 950 ENSTTRP00000009444/1-1262 WIS-DKDEAG AKSKAPSVSR GSQEPRSGSR KPASGEASCP LSKLFEEPEK ENSP00000298229/1-1258 WISIDKDEAG AKSKAPSVSR GSQEPRSGSR KPAFTEASCP LSRLFEEPEK BACU004963/1-1230 WISIDKDEAG AKSKAPSVSR GSQEPRSGSR KPASAEASCP LSKLFEEPEK bmy_03668T0/1-1271 WISIDKDEAG AKSKAPSVSR GSQEPRSGSR KPASAEASCP LSKLFEEPEK ENSBTAP00000025510/1-1264 WISIDKDEAG AKSKAPSVSR GSQDPRSGSR KPASTEASCP LSKLFEEPEK 951 1000 ENSTTRP00000009444/1-1262 PPPTGRPPAP PRAAPREEPL TPRLKPEGAP ELEGVVAPSP KNSFNNPAYY ENSP00000298229/1-1258 PPPTGRPPAP PRAAPREEPL TPRLKPEGAP EPEGVAAPPP KNSFNNPAYY BACU004963/1-1230 PPPTGRPPAP PRAAPREEPL TPRLKPEGAP ELEGVVAPSP KNSFNNPAYY bmy_03668T0/1-1271 PPPTGRPPAP PRAAPREEPL TPRLKPEGAP ELEGVVAPSP KNSFNNPAYY ENSBTAP00000025510/1-1264 PPPTGRPPAP PRAAPREEPL TPRLKPEGAP ELEGVVAPPP KNSFNNPAYY 1001 1050 ENSTTRP00000009444/1-1262 VLEGVPHQLL PPEPPSPARA PVPPATKNKV AITVPAPQLG RHRPPRVGEG ENSP00000298229/1-1258 VLEGVPHQLL PPEPPSPARA PVPSATKNKV AITVPAPQLG HHRHPRVGEG BACU004963/1-1230 VLEGVPHQLL PPEPPSPARA PVPPATKNKV AITVPAPQLG RHRPPRVGEG bmy_03668T0/1-1271 VLEGVPHQLL PPEPPSPARA PVPPATKNKV AITVPAPQLG RHRPPRVGEG ENSBTAP00000025510/1-1264 VLEGVPHQLL PPEPPSPARA PVPPATKNKV AITVPAPQLG RHRPPRAGEG 1051 1100 ENSTTRP00000009444/1-1262 SSSDEESGGT LPPPDFPPPP LPDSAIFLPP SLDPLPGPVI RGRSAGEARG ENSP00000298229/1-1258 SSSDEESGGT LPPPDFPPPP LPDSAIFLPP SLDPLPGPVV RGRGGAEARG BACU004963/1-1230 SSSDEESGGT LPPPDFPPPP LPDSAIFLPP SLDPLPGPVI RGRSAGEARG bmy_03668T0/1-1271 SSSDEESGGT LPPPDFPPPP LPDSAIFLPP SLDPLPGAVI RGRSAGEARG ENSBTAP00000025510/1-1264 SSSDEDSGGT LPPPDFPPPP LPDSAIFLPP GLDPLPGPVI RGRSGGEARG 1101 1150 ENSTTRP00000009444/1-1262 PPPPKAHPRP PLPPGPSPTS TFLGEAASGD DRSCSVLQMA KTLSEVDYDP ENSP00000298229/1-1258 PPPPKAHPRP PLPPGPSPAS TFLGEVASGD DRSCSVLQMA KTLSEVDYAP BACU004963/1-1230 PPPPKAHPRP PLPPGPSPTS TFLGEVASGD DRSCSVLQMA KTLSEVDYAP bmy_03668T0/1-1271 PPPPKAHPRP PLPPGPSPTS TFLGEVASGD DRSCSVLQMA KTLSEVDYAP ENSBTAP00000025510/1-1264 PPPPKAHPRP PLPPGPSPAS TFLGDVASGD DRSCSVLQMA KTLSEVDYAP 1151 1200 ENSTTRP00000009444/1-1262 AGPGRSVLLP GPXXXXXXXX XXXXXXXXXX XXXXRIRESI QEDLAEEAPC ENSP00000298229/1-1258 AGPARSALLP GPLELQPPRG LPSDYGRPLS FPPPRIRESI QEDLAEEAPC BACU004963/1-1230 AAPGRSMLLP GPLELQPPRG LPSDYGRPLS FPPPRIRESI QEDLAEEAPC bmy_03668T0/1-1271 AGPGRSVLLP SPLELQPPRG LPSDYGRPLS FPPPRIRESI QEDLAEEAPC ENSBTAP00000025510/1-1264 AGPGRAMLLP GPLELQPPRG LPSDYGRPLS FPPPRIRESI QEDLAEEAPC 1201 1250 ENSTTRP00000009444/1-1262 PQVGRSGGLG EAGMGAWLRA IGLERYEEGL VHNGWDDLEF LSDITEEDLE ENSP00000298229/1-1258 LQGGRASGLG EAGMSAWLRA IGLERYEEGL VHNGWDDLEF LSDITEEDLE BACU004963/1-1230 PQVGRSGGLG EAGMGAWLRA IGLERYEEGL VHNGWDDLEF LSDITEEDLE bmy_03668T0/1-1271 PQVGRSGGLG EAGMGAWLRA IGLERYEEGL VHNGWDDLEF LSDITEEDLE ENSBTAP00000025510/1-1264 PQVGRAGGLG EAGMGAWLRA IGLERYEEGL VHNGWDDLEF LSDITEEDLE 1251 1300 ENSTTRP00000009444/1-1262 EAGVQDPAHK RLLLDTLQLS K ENSP00000298229/1-1258 EAGVQDPAHK RLLLDTLQLS K BACU004963/1-1230 EAGVQDPAHK RLLLDTLQLS K bmy_03668T0/1-1271 EAGVQDPAHK RLLLDTLQLS K ENSBTAP00000025510/1-1264 EAGVQDPAHK RLLLDTLQLS K