KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:31 2014 Check: 00 .. Name: BACU014186/1-298 Len: 876 Check: 719 Weight: 1.00 Name: bmy_10889T0/1-678 Len: 876 Check: 1760 Weight: 1.00 Name: ENSTTRP00000008310/1-868 Len: 876 Check: 4001 Weight: 1.00 Name: ENSP00000318900/1-873 Len: 876 Check: 9268 Weight: 1.00 Name: ENSBTAP00000025519/1-872 Len: 876 Check: 5221 Weight: 1.00 // 1 50 BACU014186/1-298 MAEMEKEGRP PENKRSRKPA HPVKREINEE MKNFAENTMN ELLGWYGYDK bmy_10889T0/1-678 ---MGLQGRA GSK------- ---------- ---------- -------YSG ENSTTRP00000008310/1-868 MAEMEKEGRP PENKRSRKPA HPVKREINEE XXNFAENTMN ELLGWYGYDK ENSP00000318900/1-873 MAEMEKEGRP PENKRSRKPA HPVKREINEE MKNFAENTMN ELLGWYGYDK ENSBTAP00000025519/1-872 MAEMEKEGRP PENKRSRKPA HPVKREINEE MKNFAENTMN ELLGWYGYDK 51 100 BACU014186/1-298 VELKDGEDIE FRNYPTDGES RQHISVLKEN SLPKPKLPED SVISPYNIST bmy_10889T0/1-678 VDLKGGKAI- ---------- ---------- ---------- ---------- ENSTTRP00000008310/1-868 VELKDGEDIE FRNYPTDGES RQHISVLKEN SLPRPKLPED SVISPYNIST ENSP00000318900/1-873 VELKDGEDIE FRSYPTDGES RQHISVLKEN SLPKPKLPED SVISPYNIST ENSBTAP00000025519/1-872 VELKDGEDIE FRSYPTDGES RQHISVLKEN SLPKPKLPED SVISPYNIST 101 150 BACU014186/1-298 GYSGLATGNG LSDSPAGSKD HGNVPIIVPL IPPPFIKPPA EDDVSNVQIM bmy_10889T0/1-678 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008310/1-868 GYSGLATGNG LSDSPAGSKD HGNVPIIVPL IPPPFIKPPA EDDVSNVQIM ENSP00000318900/1-873 GYSGLATGNG LSDSPAGSKD HGSVPIIVPL IPPPFIKPPA EDDVSNVQIM ENSBTAP00000025519/1-872 GYSGLATGNG LSDSPAGSKD HGNVPIIVPL IPPPFIKPPA EDDVSNVQIM 151 200 BACU014186/1-298 CAWCQKVGIK RYSLSMGSEV KSFCSEKCFA ACRRAYFKRN KAYPGPG--- bmy_10889T0/1-678 ---------- ---------- ------KTFG ---------- ---------- ENSTTRP00000008310/1-868 CAWCQKVGIK RYSLSMGSEV KSFCSEKCFA ACRRAYFKRN KARDEDGHAE ENSP00000318900/1-873 CAWCQKVGIK RYSLSMGSEV KSFCSEKCFA ACRRAYFKRN KARDEDGHAE ENSBTAP00000025519/1-872 CAWCQKVGIK RYSLSMGSEV KSFCSEKCFA ACRRAYFKRN KARDEDGHAE 201 250 BACU014186/1-298 ---------- ----SHQATC CLLLYTSCAE ---------- ---------- bmy_10889T0/1-678 ---------- ------KRSL EMVVCDWCKH IRHTKEYLDF GDGERRLQFC ENSTTRP00000008310/1-868 NFPQQHYAKE TPRLAFKNNC ELLVCDWCKH IRHTKEYLDF GDGERRLQFC ENSP00000318900/1-873 NFPQQHYAKE TPRLAFKNNC ELLVCDWCKH IRHTKEYLDF GDGERRLQFC ENSBTAP00000025519/1-872 NFPQQHYAKE TPRLAFKNNC ELLVCDWCKH IRHTKEYLDF GDGERRLQFC 251 300 BACU014186/1-298 ---------- ---------- ---------- ---------- ------HETW bmy_10889T0/1-678 SAKCLNQYKM DIFYKETQAN LPAGLCSTLH PPMENKAEGT GVQLLTPDSW ENSTTRP00000008310/1-868 SAKCLNQYKM DIFYKETQAN LPAGLCSTLH PPMENKAEGT GVQLLTPDSW ENSP00000318900/1-873 SAKCLNQYKM DIFYKETQAN LPAGLCSTLH PPMENKAEGT GVQLLTPDSW ENSBTAP00000025519/1-872 SAKCLNQYKM DIFYKETQAN LPAGLCSTLH PPMENKTEGT GVQLLTPDSW 301 350 BACU014186/1-298 R--------- ---------- ---------- -----DLMQC ---------- bmy_10889T0/1-678 NIPLTDARRK APSPAAAAGQ SQGPGPSVST TVSPSDTANC SVTKIPTPVP ENSTTRP00000008310/1-868 NIPLTDARRK APSPAAAAGQ SQGPGPSVST TVSPSDTANC SVTKIPTPVP ENSP00000318900/1-873 NIPLTDARRK APSPVATAGQ SQGPGPSAST TVSPSDTANC SVTKIPTPVP ENSBTAP00000025519/1-872 NIPLTDARRK APSPVAAAGQ SQGPGPSAST TVSPSDTANC SVTKIPTPVP 351 400 BACU014186/1-298 ---------- ---------- ---------- ---------- -----PVYRT bmy_10889T0/1-678 KSMPISETPN IPPVSVQPPA SIGPPLGVPP RSPPMVMTNR GPVPLPIFME ENSTTRP00000008310/1-868 KSMPISETPN IPPVSVQPPA SIGPPLGVPP RSPPMVMTNR GPVPLPIFME ENSP00000318900/1-873 KSIPISETPN IPPVSVQPPA SIGPPLGVPP RSPPMVMTNR GPVPLPIFME ENSBTAP00000025519/1-872 KSMPISETPN IPPVSVQPPA SIGPPLGVPP RSPPMVMTNR GPVPLPIFME 401 450 BACU014186/1-298 QQVME----- ---------- -----VCDEI LDGC------ ---------- bmy_10889T0/1-678 QQIMQQIRPP FIRGPPHHAS NPNSPLSNPM LPGIGPPPGG PRNLGPTSSP ENSTTRP00000008310/1-868 QQIMQQIRPP FIRGPPHHAS NPNSPLSNPM LPGIGPPPGG PRNLGPTSSP ENSP00000318900/1-873 QQIMQQIRPP FIRGPPHHAS NPNSPLSNPM LPGIGPPPGG PRNLGPTSSP ENSBTAP00000025519/1-872 QQIMQQLRPP FIRGPPHHAS NPNSPLSNPM LPGIGPPPGG PRNLGPTSSP 451 500 BACU014186/1-298 ---------- ---------- ---------- ---------- ---------- bmy_10889T0/1-678 MHRPMLSPHI HPPSTPTMPG NPPGLLPPPP PGAPLPSLPF PPVSMMPNGP ENSTTRP00000008310/1-868 MHRPMLSPHI HPPSTPTMPG NPPGLLPPPP PGAPLPSLPF PPVSMMPNGP ENSP00000318900/1-873 MHRPMLSPHI HPPSTPTMPG NPPGLLPPPP PGAPLPSLPF PPVSMMPNGP ENSBTAP00000025519/1-872 MHRPLLSPHI HPPSTPTMPG NPPGLLPPPP PGAPLPSLPF PPVSMMPNGP 501 550 BACU014186/1-298 ---------- ---------- KILVVCSPF- ---------- ---------- bmy_10889T0/1-678 MPVPQMMNFG LPSLAPLVPP PTLLVPYPVI VPLPVPIPIP IPIPHINDSK ENSTTRP00000008310/1-868 MPVPQMMNFG LPSLAPLVPP PTLLVPYPVI VPLPVPIPIP IPIPHINDSK ENSP00000318900/1-873 MPVPQMMNFG LPSLAPLVPP PTLLVPYPVI VPLPVPIPIP IPIPHVSDSK ENSBTAP00000025519/1-872 MPVPQMMNFG LPSLAPLVPP PTLLVPYPVI VPLPVPIPIP IPVPHVSDSK 551 600 BACU014186/1-298 ---------- ---------- ---------- ---------- -----EAPSI bmy_10889T0/1-678 PPNGFSSNGE NFIPSAPGDS SAAGGKPGGH SLSPRDSKQG SSKSADSPPG ENSTTRP00000008310/1-868 PPNGFSSNGE NFIPSAPGDS SAAGGKPGGH SLSPRDSKQG SSKSADSPPG ENSP00000318900/1-873 PPNGFSSNGE NFIPNAPGDS AAAGGKPSGH SLSPRDSKQG SSKSADSPPG ENSBTAP00000025519/1-872 PPNGFSSNGE NFIPSAPGDS SAAGGKPGGH SLSPRDSKQG SSKSADSPPG 601 650 BACU014186/1-298 CSSH------ ---------- ---------- ---------- -FP------- bmy_10889T0/1-678 CSGQALSLA- -TAEHGRSEV VDLTRRAGS- --PPGAGGQL GFP-GVLQGP ENSTTRP00000008310/1-868 CSGQALSLA- -PAEHSRSEV VDLTRRAGS- --PPGAGGQL GFP-GVLQGT ENSP00000318900/1-873 CSGQALSLAP TPAEHGRSEV VDLTRRAGSP PGPPGAGGQL GFP-GVLQGP ENSBTAP00000025519/1-872 CSGQALSLAP APAEHGRSEV VDLTRRAGS- --PPGAGGQL GFPGGVLQGP 651 700 BACU014186/1-298 ---------- ---------- ---------- ---------- ---------- bmy_10889T0/1-678 QDGVIDLTVG HRARLHNVIH RALHAHVKAE REPGAAERRT CGGCRDGHCS ENSTTRP00000008310/1-868 QDGVIDLTVG HRARLHNVIH RALHAHIKAE REPGAAERRT CGGCRDGHCS ENSP00000318900/1-873 QDGVIDLTVG HRARLHNVIH RALHAHVKAE REPSAAERRT CGGCRDGHCS ENSBTAP00000025519/1-872 QDGVIDLTVG HRARLHNVIH RALHAHVKAE REPGAAERRT CGGCRDGHCS 701 750 BACU014186/1-298 ---------- ---------- ---------- ---------S PPWER----- bmy_10889T0/1-678 PPAAGDPGPG APAGPEAAAA CNVIVNGTRG TASEGAKGAE PPPEQ--PQP ENSTTRP00000008310/1-868 PPAAGDPGPG APAGPEAAAA CNVIVNGTRG GAAEGAKGAE PPPEQ--PQP ENSP00000318900/1-873 PPAAGDPGPG APAGPEAAAA CNVIVNGTRG AAAEGAKSAE PPPEQ--PPP ENSBTAP00000025519/1-872 PPAAGDPGPG APAGPEAAAA CNVIVNGTRG -AAEGAKGAE PPPEQPPPPP 751 800 BACU014186/1-298 ---------- ---------- ------KNTS IETFEREESG VKLKREE--- bmy_10889T0/1-678 PPPPAPPKKL LSPEEPAVSE LESVKENNCA SNCHLDGEAA KKLIGEEALA ENSTTRP00000008310/1-868 PPPPAPPKKL LSPEEPAVSE LESVKENNCA SNCHLDGEAA KKLMGEEALA ENSP00000318900/1-873 PPPPAPPKKL LSPEEPAVSE LESVKENNCA SNCHLDGEAA KKLMGEEALA ENSBTAP00000025519/1-872 PPPPAPPKKL LSPEEPAVSE LESVKENNCA SNCHLDGEAA KKLMGEEALA 801 850 BACU014186/1-298 ---------- ---------- ---------- ---------- ---VPVYFSQ bmy_10889T0/1-678 GGDKSDPNLN NPADEDHAYA LRMLPKTGCV IQPVPKPAEK TAMAPCIISS ENSTTRP00000008310/1-868 GGDKSDPNLN NPADEDHAYA LRMLPKTGCV IQPVPKPAEK TAMAPCIISS ENSP00000318900/1-873 GGDKSDPNLN NPADEDHAYA LRMLPKTGCV IQPVPKPAEK AAMAPCIISS ENSBTAP00000025519/1-872 GGDKSDPNFN NPADEDHAYA LRMLPKTGCV IQPVPKPAEK AAMAPCIISS 851 900 BACU014186/1-298 AL-------- ---------- ------ bmy_10889T0/1-678 PMLSAGPEDL EPPLKRRCLR IRNQNK ENSTTRP00000008310/1-868 PMLSAGPEDL EPPLKRRCLR IRNQNK ENSP00000318900/1-873 PMLSAGPEDL EPPLKRRCLR IRNQNK ENSBTAP00000025519/1-872 PMLSAGPEDL EPPLKRRCLR IRNQNK