KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:31 2014 Check: 00 .. Name: ENSBTAP00000025526/1-565 Len: 599 Check: 2924 Weight: 1.00 Name: ENSTTRP00000005231/1-571 Len: 599 Check: 9005 Weight: 1.00 Name: ENSP00000246801/1-592 Len: 599 Check: 6566 Weight: 1.00 Name: bmy_06366T0/1-572 Len: 599 Check: 2098 Weight: 1.00 Name: BACU011067/1-465 Len: 599 Check: 9918 Weight: 1.00 // 1 50 ENSBTAP00000025526/1-565 MASVVVKTIW QSKEIHEAGD PPAGVESRSQ LVPETPGGVT SPVKGIAKKK ENSTTRP00000005231/1-571 MASVVVKTIW QSKEIHEAGD PPAGVESRSQ LVPEAPGGVT SPVKGISKKK ENSP00000246801/1-592 MASVVVKTIW QSKEIHEAGD TPTGVESCSQ LVPEAPRRVT SRAKGIPKKK bmy_06366T0/1-572 MASVVVKTIW QSKEIHEAGD PPAGVESRSQ LVPEAPGGVT SPVKGIAKKK BACU011067/1-465 MASVVVKTIW QSKEIHEAGD PPAGVESRSQ LVPEAPGGVT SPVKGIAKKK 51 100 ENSBTAP00000025526/1-565 KAVSFHGVEP RMSHEPMHWC LNLKRSSACT NVSLLNLAAM EPTDSSGTDS ENSTTRP00000005231/1-571 KAVSFHGVEP RMSYEPMHCC LNLKRSSACT NVSLLNLATM ELTDSSGTDS ENSP00000246801/1-592 KAVSFHGVEP QMSHQPMHWC LNLKRSSACT NVSLLNLAAM EPTDSTGTDS bmy_06366T0/1-572 KAVSFHGVEP RMSHEPMHWC LNLKRSSACT NVSLVNLAAM EPTDSSGTDS BACU011067/1-465 KAVSFHGVEP RMSHEPMHWC LNLKRSSACT NVSLLNLAAM EPTDSSGTDS 101 150 ENSBTAP00000025526/1-565 TTED-SSSLA LPVPPASPTP PWAPDDPDIT EILSGVNSGL VRAKDSITSL ENSTTRP00000005231/1-571 TVED-SSLMA L----PVPIP PWAPDDPDIT EILXXXXXXX XXXXXXXXXX ENSP00000246801/1-592 TVEDLSGQLT LAGPPASPTL PWDPDDADIT EILSGVNSGL VRAKDSITSL bmy_06366T0/1-572 TVED-SGLLA L----PVPIP PWAPDDPDIT EILSWVNSGL VHAKDSITSL BACU011067/1-465 TVED-SGLLA L----PVPIP PWAPDDPDIT EILSWVNNGL VHAKDSITSL 151 200 ENSBTAP00000025526/1-565 KEKTTRVNQH VQTLQ-SECS VLSENLEKRR QEAEELEGYC SQLKENCRKV ENSTTRP00000005231/1-571 XXXXXXXXXX XXXXX-XXXX XXXXXXXXXX XXXXXXXXXX XXXXENCRKV ENSP00000246801/1-592 KEKTNRVNQH VQSLQ-SECS VLSENLERRR QEAEELEGYC IQLKENCWKV bmy_06366T0/1-572 KEKTTRVNQH VQTLQVSECS VLSENLERRR QEAEELEGYC SQLKENCWKV BACU011067/1-465 KEKTTRVNQH VQTLQ-SECS VLSENLERRR QEAEELEGYC SQLKENCWKV 201 250 ENSBTAP00000025526/1-565 TRSVEDAEIK TNVLKQNSAL LEEKLRYLQQ QLQDETPRRQ EAELQELE-- ENSTTRP00000005231/1-571 TRSVEDAEIK TNVLKQNSAL LEEKLRYL-- QMQNETPRRQ EAELQGLE-- ENSP00000246801/1-592 TRSVEDAEIK TNVLKQNSAL LEEKLRYLQQ QLQDETPRRQ EAELQEPEEK bmy_06366T0/1-572 TRSVEDAEIK TNVLKQNSAL LEEKLRYL-- QMQDETPRRQ EAELQELE-- BACU011067/1-465 TRSVEDAEIK TNVLKQNSAL LE-------- ---------- ---------- 251 300 ENSBTAP00000025526/1-565 ---------- --QKLEAGLS RHGLGPATQP PGCSGPPGSP DEPLRPRGLA ENSTTRP00000005231/1-571 ---------- --QKLEAGLS RHGLGLATQP PGCSSPPGSP DGSPRRRGLA ENSP00000246801/1-592 QEPEEKQEPE EKQKPEAGLS WNSLGPAATS QGCPGPPGSP DKPSRPHGLV bmy_06366T0/1-572 ---------- --QELEAGLC RHGLGLATQP PGCSSPPGSP DEPPRRRGVA BACU011067/1-465 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000025526/1-565 PGGWGMGPRA GEGPIVSEQE LQKVSAGLEE LRREVSSLTA RWHQEEGAVQ ENSTTRP00000005231/1-571 PGGWGMGPRA GEGPIVSEQE LQKVSAYLEE LRREVSSLTA RWHQEEGAVQ ENSP00000246801/1-592 PAGWGMGPRA GEGPYVSEQE LQKLFTGIEE LRREVSSLTA RWHQEEGAVQ bmy_06366T0/1-572 PGGWGMGPRA GEGPIVSEQE LQKVSASLEE LRREVSSLTA RWHQEEGAVQ BACU011067/1-465 ---------- ---------- ---------- ---------- ----EEGAVQ 351 400 ENSBTAP00000025526/1-565 EALRLLGGLG GRLDGFLGQW ERAQREQAQT ARGLQELRGR ADELCTMVER ENSTTRP00000005231/1-571 EALRLLGGLG GRIDSFLGQW ERAQREQAQA ARGLQELRGR TEELCTMVER ENSP00000246801/1-592 EALRLLGGLG GRVDGFLGQW ERAQREQAQT ARDLQELRGR ADELCTMVER bmy_06366T0/1-572 EALRLLGGLG GRLDGFLGQW ERAQREQAQA ARGLQELQGR TDELCTMVER BACU011067/1-465 EALRLLGGLG GRLDGFLGQW ERAQREQAQA ARGLQELRGR TDELYTMVER 401 450 ENSBTAP00000025526/1-565 SAVSVASLRS ELEGLGPVKP ILEELGRQFQ SSRRVSDLSM NLDRGAQGSC ENSTTRP00000005231/1-571 SAVSVASLRS ELEALSPVKP ILEELGRHFQ SSRRGSDLSM NLDRAPQGSC ENSP00000246801/1-592 SAVSVASLRS ELEGLGPLKP ILEEFGRQFQ NSRRGPDLSM NLDRSHQGNC bmy_06366T0/1-572 SAVSVASLRS ELEALGPVKP ILEELGRQFQ SSRRGSDLSM NLDRAPQGSC BACU011067/1-465 SAVSVASLRS ELEALGPVKP ILEELGRQFQ SSRRGSDLSM NLDRAPQGSC 451 500 ENSBTAP00000025526/1-565 TRCASQGQQL STESLQQLLE RALTPLVDEV KQRGLAPACP SCQRLHKKIL ENSTTRP00000005231/1-571 ARCASQGQQL STEFLQQLLE RALTPLVDEV KQKGLVPACP SCQRLHKKIL ENSP00000246801/1-592 ARCASQGSQL STESLQQLLD RALTSLVDEV KQRGLTPACP SCQRLHKKIL bmy_06366T0/1-572 ARCASQGQQL STESLQQLLE RALTPLVDEV KQRGLAPACP SCQRLHKKIL BACU011067/1-465 ARCASQGQQL STESLQQLLE RALTPLVDEV KQRGLAPACP SCQRLHKKIL 501 550 ENSBTAP00000025526/1-565 PSPASPAAPT LLSPGAGAP- --GLGQTRQG RGPELHPSAG PRRSLAGQEP ENSTTRP00000005231/1-571 ELERQALAKH VRAEALSSTL RLAQDEALRA KNLLLTDKMK PEEKVAALDY ENSP00000246801/1-592 ELERQALAKH VRAEALSSTL RLAQDEALRA KNLLLTDKMK PEEKMATLDH bmy_06366T0/1-572 ELERQALAKH VRAEALSSTL RLAQDEALRA KNLLLTDKMK PEEKVAALDY BACU011067/1-465 ELERQALAKH VRAEALSSTL RLAQDEALRA KNLLLTDKMK PEEKVAALDY 551 600 ENSBTAP00000025526/1-565 ---------- -----AADGQ DEAGGEGGRS GLSTLENVLP SRSAQQPAT ENSTTRP00000005231/1-571 LHLKMCSLHD QLSNLPLEGS MGTMGGGNDG GTP------P KRGGPTPEQ ENSP00000246801/1-592 LHLKMCSLHD HLSNLPLEGS TGTMGGGSSA GTP------P KQGGSAPEQ bmy_06366T0/1-572 LHLKMCSLHD QLSNLPLEGS TGTMGGGSGG GTP------P KRGGPTPEQ BACU011067/1-465 LHLKMCSLHD QLSNLPLEGS TGTMGGGGGG GTP------P KRGGPTPEQ