KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:31 2014 Check: 00 .. Name: bmy_07285T0/1-347 Len: 418 Check: 7448 Weight: 1.00 Name: ENSP00000401371/1-386 Len: 418 Check: 3984 Weight: 1.00 Name: ENSBTAP00000025528/1-384 Len: 418 Check: 7014 Weight: 1.00 Name: BACU006039/1-387 Len: 418 Check: 4836 Weight: 1.00 Name: ENSTTRP00000001119/1-386 Len: 418 Check: 4376 Weight: 1.00 // 1 50 bmy_07285T0/1-347 ---------- ---------- ---------- -------MIM DTAGNDPYCF ENSP00000401371/1-386 MEDEMPKTLY VGNLSRDVTE ALILQLFSQI GPCKNCKMIM DTAGNDPYCF ENSBTAP00000025528/1-384 MEDEMPKTLY VGNLSRDVTE ALILQLFSQI GPCKNCKMIM DTAGNDPYCF BACU006039/1-387 MEDEMPKTLY VGNLSRDVTE ALILQLFSQI GPCKNCKMIM DTAGNDPYCF ENSTTRP00000001119/1-386 MEDEMPKTLY VGNLSRDVTE ALILQLFSQI GPCKNCKMIM DTAGNDPYCF 51 100 bmy_07285T0/1-347 AEFYERRHAA AALAAMNGRK IMGKEVKVKW ATTHSSQKKD TSSNTVVSTQ ENSP00000401371/1-386 VEFHEHRHAA AALAAMNGRK IMGKEVKVNW ATTPSSQKKD TSSSTVVSTQ ENSBTAP00000025528/1-384 VEFYEHRHAA AALAAMNGRK IMGKEVKVNW ATTPSSQKKD TSSSTVVSTQ BACU006039/1-387 VEFYEHRHAA AALAAMNGRK IM-------- ---------- ---------- ENSTTRP00000001119/1-386 VEFYEHRHAA AALAAMNGRK IMGKEVKVNW ATTPSSQKKD TSSSTVVSTQ 101 150 bmy_07285T0/1-347 RSQGHFHVFA GDLSPEITTE DTKAAFAPSG RISDARVVKD MATGKSKGYG ENSP00000401371/1-386 RSQDHFHVFV GDLSPEITTE DIKAAFAPFG RISDARVVKD MATGKSKGYG ENSBTAP00000025528/1-384 RSQDHFHVFV GDLSPEITTE DIKAAFAPFG RISDARVVKD MATGKSKGYG BACU006039/1-387 ---DHFHVFV GDLSPEITTE DIKAAFAPFG RISDARVVKD MATGKSKGYG ENSTTRP00000001119/1-386 RSQDHFHVFV GDLSPEITTE DIKAAFAPFG RISDARVVKD MATGKFKGYG 151 200 bmy_07285T0/1-347 FVSFFNRWDA ENSIQQMGGQ WLGGRQIRTN WATRKPPLPK STYESNTKQL ENSP00000401371/1-386 FVSFFNKWDA ENAIQQMGGQ WLGGRQIRTN WATRKPPAPK STYESNTKQL ENSBTAP00000025528/1-384 FVSFFNKWDA ENAIQQMGGQ WLGGRQIRTN WATRKPPAPK STYESNTKQL BACU006039/1-387 FVSFFNKWDA ENAIQQMGGQ WLGGRQIRTN WATRKPPAPK STYESNTKQL ENSTTRP00000001119/1-386 FVSFFNKWDA ENAIQQMGGQ WLGGRQIRTN WATRKPPAPK STYESNTKQL 201 250 bmy_07285T0/1-347 SYDEVVNQSS PSNCTVYGGG VTSGLTEQLM RQSFSPFGQI MEIRVFPDKG ENSP00000401371/1-386 SYDEVVNQSS PSNCTVYCGG VTSGLTEQLM RQTFSPFGQI MEIRVFPDKG ENSBTAP00000025528/1-384 SYDEVVNQSS PSNCTVYCGG VTSGLTEQLM RQTFSPFGQI MEIRVFPDKG BACU006039/1-387 SYDEVVNQSS PSNCTVYCGG VTSGLTEQLM RQTFSPFGQI MEIRVFPDKG ENSTTRP00000001119/1-386 SYDEVVNQSS PSNCTVYCGG VTSGLTEQLM RQTFSPFGQI MEIRVFPDKG 251 300 bmy_07285T0/1-347 YSFV------ ---------- --RFNSHESA AHAIVSVNGT TIEGHVVKCY ENSP00000401371/1-386 YSFV------ ---------- --RFNSHESA AHAIVSVNGT TIEGHVVKCY ENSBTAP00000025528/1-384 YSFV------ ---------- --RFNSHESA AHAIVSVNGT TIEGHVVKCY BACU006039/1-387 YSFVRYMYTK QFILVILNII FNRFNSHESA AHAIVSVNGT TIEGHVVKCY ENSTTRP00000001119/1-386 YSFV------ ---------- --RFNSHESA AHAIVSVNGT TIEGHVVKCY 301 350 bmy_07285T0/1-347 WGKETLDMIN PMQQQNQIGY PQAYGQWGQW YGNAQQIGQY MPNGWQVPAY ENSP00000401371/1-386 WGKETLDMIN PVQQQNQIGY PQPYGQWGQW YGNAQQIGQY MPNGWQVPAY ENSBTAP00000025528/1-384 WGKETLDMIN PVQQQNQIGY PQAYGQWGQW YGNAQQIGQY MPNGWQVPAY BACU006039/1-387 WGKETLDMIN PVQQQNQIGY PQAYGQWGQW YGNAQQIGQY MPNGWQVPAY ENSTTRP00000001119/1-386 WGKETLDMIN PVQQQNQIGY PQAYGQWGQW YGNAQQIGQY MPNGWQVPAY 351 400 bmy_07285T0/1-347 GMYGQLWNQQ GFK------- ---------Q SSAPWMGPNY GVQPPPGQNG ENSP00000401371/1-386 GMYGQAWNQQ GFN------- -------QTQ SSAPWMGPNY GVQPPQGQNG ENSBTAP00000025528/1-384 GMYGQPWNQQ GFN------- -------QTQ SSPPWMGPNY GVQPPPGQNG BACU006039/1-387 GMYGQPWNQQ GFNGFPLPSA SFTFSTSQTQ SSAPWMGPNY GVQPPPGQNG ENSTTRP00000001119/1-386 GMYGQPWNQQ GFN------- -------QTQ SSAPWMGPNY GVQPPPGQNG 401 450 bmy_07285T0/1-347 SMMPISLQGI RVAGYETQ ENSP00000401371/1-386 SMLPNQPSGY RVAGYETQ ENSBTAP00000025528/1-384 SMMPNQPAGY RVAGFF-- BACU006039/1-387 SMMPNQPAGY RVAGYETQ ENSTTRP00000001119/1-386 SMMPNQPAGY RVAGYETQ