KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:37 2014 Check: 00 .. Name: ENSTTRP00000010689/1-1267 Len: 1435 Check: 2984 Weight: 1.00 Name: ENSP00000314499/1-1311 Len: 1435 Check: 8210 Weight: 1.00 Name: ENSBTAP00000025537/1-1268 Len: 1435 Check: 6085 Weight: 1.00 Name: bmy_12242T0/1-934 Len: 1435 Check: 4749 Weight: 1.00 Name: BACU009118/1-1301 Len: 1435 Check: 8209 Weight: 1.00 // 1 50 ENSTTRP00000010689/1-1267 ---------- ---------- ---------- --MSLLQSAL DFLAGPGSLG ENSP00000314499/1-1311 ---------- ---------- ---------- --MSLLQSAL DFLAGPGSLG ENSBTAP00000025537/1-1268 ---------- ---------- ---------- --MSLLQSAL DFLAGPGSLG bmy_12242T0/1-934 GSWSGSRPAV AEWTRTRLDA EPSVRRPPRA ATMSLLQSAL DFLAGPGSLG BACU009118/1-1301 ---------- --------MG APGSGRERCS GSSHVLAPRF PQLCG----- 51 100 ENSTTRP00000010689/1-1267 GAAGRDQTDF VGQTVEMGEL RLRVRRVLAE GGFAFVYEAQ DLGSGREYAL ENSP00000314499/1-1311 GASGRDQSDF VGQTVELGEL RLRVRRVLAE GGFAFVYEAQ DVGSGREYAL ENSBTAP00000025537/1-1268 GAAGRDQTDF VGQTVEMGEL RLRVRRVLAE GGFAFVYEAQ DLGSGREYAL bmy_12242T0/1-934 GAAGRDQTDF VGQTVEMGEL RLRVRRVLAE ASIG--REES DTGQAEFLLL BACU009118/1-1301 --------DF S--------- ---------- ---------- ---------- 101 150 ENSTTRP00000010689/1-1267 KRLLSNEEEK NRAIIQEVCF MKKLSGHANI VQFCSAASIG KEESDTGQAE ENSP00000314499/1-1311 KRLLSNEEEK NRAIIQEVCF MKKLSGHPNI VQFCSAASIG KEESDTGQAE ENSBTAP00000025537/1-1268 KRLLSNEEEK NRAIIQEVCF MKKLSGHPNI VQFCSAASIG KEESDTGQAE bmy_12242T0/1-934 MELCRAEDR- --------CY LRKHGDY--- ----FLRDIR KDIRTRGG-- BACU009118/1-1301 ---LTAEDR- --------CY LRKHGDY--- ----FLRDMR KDIRTRGG-- 151 200 ENSTTRP00000010689/1-1267 FLLLMELCR- -----GQLVE FLKKIESKGP LSCDTVLKIF YQTCRAVQHM ENSP00000314499/1-1311 FLLLTELCK- -----GQLVE FLKKMESRGP LSCDTVLKIF YQTCRAVQHM ENSBTAP00000025537/1-1268 FLLLMELCR- -----GQLVE FLKKVESKGP LSCDTVLKIF YQTCRAVQHM bmy_12242T0/1-934 ---FSCSCRV TMGSLGQLVE FLKKIESKGP LSCDTVLKIF YQTCRAVQHM BACU009118/1-1301 ---FSCSCRV TMGSLGQLVE FLKKIESKGP LSCDTVLKIF YQTCRAVQHM 201 250 ENSTTRP00000010689/1-1267 HRQKPPIIHR DLK------- ---------- ---------- ---------- ENSP00000314499/1-1311 HRQKPPIIHR DLK------- ---------- ---------- ---------- ENSBTAP00000025537/1-1268 HRQKPPIIHR DLK------- ---------- ---------- ---------- bmy_12242T0/1-934 HRQKPPIIHR DLK------- ---------- ---------- ---------- BACU009118/1-1301 HRQKPPIIHR DLKWDLPFAL WGVVGVEPHS PFARCQGFEA RPSQEPTPSR 251 300 ENSTTRP00000010689/1-1267 ---------- ----VENLLL SNQGTIKLCD FGSATTISHY PDYSWSAQRR ENSP00000314499/1-1311 ---------- ----VENLLL SNQGTIKLCD FGSATTISHY PDYSWSAQRR ENSBTAP00000025537/1-1268 ---------- ----VENLLL SNQGTIKLCD FGSATTISHY PDYSWSAQRR bmy_12242T0/1-934 ---------- ----VENLLL SNQGTIKLCD FGSATTISHY PDYSWSARRR BACU009118/1-1301 ATALCLAVPA SVLLVENLLL SNQGTIKLCD FGSATTISHY PDYSWSAQRR 301 350 ENSTTRP00000010689/1-1267 ALVEEEITRN TTPMYRTPEI VDLYSNFPIG EKQDIWALGC VLYLLCFGQH ENSP00000314499/1-1311 ALVEEEITRN TTPMYRTPEI IDLYSNFPIG EKQDIWALGC ILYLLCFRQH ENSBTAP00000025537/1-1268 ALVEEEITRN TTPMYRTPEI VDLYSNFPIG EKQDIWALGC ILYLLCFGQH bmy_12242T0/1-934 ALVEEEITRN TTPMYRTPEI VDLYSNFPIG EKQDIWALGC ILYLLCFGQH BACU009118/1-1301 ALVEEEITRN TTPMYRTPEI VDLYSNFPIG EKQDIWALGC ILYLLCFGQH 351 400 ENSTTRP00000010689/1-1267 PFEDGAKLRI VNGKYAIPAD DTRYSVFHGL IRATLRVNPE ERLSITELVS ENSP00000314499/1-1311 PFEDGAKLRI VNGKYSIPPH DTQYTVFHSL IRAMLQVNPE ERLSIAEVVH ENSBTAP00000025537/1-1268 PFEDGAKLRI VNGKYAIPAD DTRYSVFHSL IRSMLKVNPE ERLSVTELVN bmy_12242T0/1-934 PFEDGAKLRI VNGKYAIPAD DTRYSVFHGL IRAMLRVNPE ERLSITELVN BACU009118/1-1301 PFEDGAKLRI VNGKYAIPAD DTRYSVFHGL IRAMLRVNPE ERLSITELVN 401 450 ENSTTRP00000010689/1-1267 QLQEIAAARN VNPKSPITEL LEQNGGYGHA A------PPG GSAGSGCGGG ENSP00000314499/1-1311 QLQEIAAARN VNPKSPITEL LEQNGGYGSA TLSRGPPPPV GPAGSGYSGG ENSBTAP00000025537/1-1268 QLQEIAAARN VNPKSPITEL LEQNGGYGHA A------PPG ST-----GSS bmy_12242T0/1-934 QLQEIAAARS VNPKSPITEL LEQNGGYGHA A------PPG GSTGSGCGGG BACU009118/1-1301 QLQEIAAARS VNPKSPVTEL LEQNGGYGHA A------PPA GSTGSGCGGG 451 500 ENSTTRP00000010689/1-1267 LVVAEYDQPY GGFLDILRGG TERLFTNIKD TSSKVIQSVA NYAKGDLDLS ENSP00000314499/1-1311 LALAEYDQPY GGFLDILRGG TERLFTNLKD TSSKVIQSVA NYAKGDLDIS ENSBTAP00000025537/1-1268 LVVTEYEQPY GGFLDILRGG TERLFTNIKD TSSKVIQSVA NYAKGDLDIS bmy_12242T0/1-934 LVVAEYDQPY GGLLDILRGS TERLFTNIKD TSSKVIQSVA NYAKGDLDIS BACU009118/1-1301 LVVAEYDQPY GGLLDILRGS TERLFTNIKD TSSKVIQSVA NYAKGDLDIS 501 550 ENSTTRP00000010689/1-1267 YITSRIAVMS FPAEGVESAI KNNIEDVRLF LDAKHPGRYA VYNLSLRTYR ENSP00000314499/1-1311 YITSRIAVMS FPAEGVESAL KNNIEDVRLF LDSKHPGHYA VYNLSPRTYR ENSBTAP00000025537/1-1268 YITSRIAVMS FPAEGVESAI KNNIEDVRLF LDSKHPGRYA VYNLSPRTYR bmy_12242T0/1-934 YITSRIAVMS FPAEGVESAI KNNIEDVRLF LDSKHPGRYA VYNLSPRTYR BACU009118/1-1301 YITSRIAVMS FPAEGVESAI KNNIEDVRLF LDSKHPGHYA VYNLSPRTYR 551 600 ENSTTRP00000010689/1-1267 ASKFHNRVSE CGWAARRAPS LRSLYSLCRN MHAWLRQDPG NVCVVHCVDG ENSP00000314499/1-1311 PSRFHNRVSE CGWAARRAPH LHTLYNICRN MHAWLRQDHK NVCVVHCMDG ENSBTAP00000025537/1-1268 PSKFHNRVSD CGWVARRAPS LRSLYSLCRN MHAWLRRDPG NVCVVHCMDG bmy_12242T0/1-934 ASKFHNR--- ---------- ---------- ---------- --------DG BACU009118/1-1301 ASKFHNRVSE CGWAARRAPS LRSLYSLCRN MHAWLRQDPG NVCVVHCMDG 601 650 ENSTTRP00000010689/1-1267 RAASAVAVCS FLCFCRLFST AEAAVYMFSM KRCPPGIWPS HKRYIEYMCD ENSP00000314499/1-1311 RAASAVAVCS FLCFCRLFST AEAAVYMFSM KRCPPGIWPS HKRYIEYMCD ENSBTAP00000025537/1-1268 RAVSAVAVCS FLCFCRLFST AEAAVYMFSM KRCPPGIWPS HKRYIEYMCD bmy_12242T0/1-934 RAASAVAVCS FLCFCRLFST AEAAVYMFSM KRCPPGIWPS HKRYIEYMCD BACU009118/1-1301 RAASAVAVCS FLCFCRLFST AEAAVYMFSM KRCPPGIWPS HKRYIEYMCD 651 700 ENSTTRP00000010689/1-1267 MVAEEPITPH SKPILVKAVV MTPVPLFSKQ RNGCRPFCEV YVGDERVTTT ENSP00000314499/1-1311 MVAEEPITPH SKPILVRAVV MTPVPLFSKQ RSGCRPFCEV YVGDERVAST ENSBTAP00000025537/1-1268 MVAEEPVTPH SKPILVKAVV MTPVPLFSKQ RSGCRPFCEV YVGDERVTTT bmy_12242T0/1-934 MVAEEPITPH SKPILVRAVV MTPVPLFSKQ RSGCRPFCEV YVGDERMTTT BACU009118/1-1301 MVAEEPVTPH SKPILVRAVV MTPVPLFSKQ RSGCRPFCEV YVGDERMTTT 701 750 ENSTTRP00000010689/1-1267 SQEYDKMRDF KIEDGKAVIP LGITVQGDVL IIIYHARSTL GGRLQAKMAS ENSP00000314499/1-1311 SQEYDKMRDF KIEDGKAVIP LGVTVQGDVL IVIYHARSTL GGRLQAKMAS ENSBTAP00000025537/1-1268 SQEYDKMRDF KIEDGKAVIP LGITVQGDVL IIIYHARSTL GGRLQAKMAS bmy_12242T0/1-934 SQEYDKLRDF KIEDGKAVIP LGITVQGDVL IIIYHARSTL GGRLQAKMAS BACU009118/1-1301 SQEYDKLRDF KIEDGKAVIP LGITVQGDVL IIIYHARSTL GGRLQAKMAS 751 800 ENSTTRP00000010689/1-1267 MKMFQIQFHT GFVPRNAATV KFAKYDLDAC DIQEKYPDLF QVNLEVEVEP ENSP00000314499/1-1311 MKMFQIQFHT GFVPRNATTV KFAKYDLDAC DIQEKYPDLF QVNLEVEVEP ENSBTAP00000025537/1-1268 MKMFQIQFHT GFVPRNAATV KFAKYDLDAC DIQEKYPDLF QVSLEVEVEP bmy_12242T0/1-934 MKMFQIQFHT GFVPRNAATV KFAKYDLDAC DIQEKYPDLF QVNLEVEVEP BACU009118/1-1301 MKMFQIQFHT GFVPRNAATV KFAKYDLDAC DIQEKYPDLF QVNLEVEVEP 801 850 ENSTTRP00000010689/1-1267 RDRPGHEAPP WETASMRGLN PKILFSSREE QQDMLAKFGK PELPRQPGSS ENSP00000314499/1-1311 RDRPSREAPP WENSSMRGLN PKILFSSREE QQDILSKFGK PELPRQPGST ENSBTAP00000025537/1-1268 RDRPGHEAPP WEGAGMRGLN PKILFSSREE QQDVLSKFGK PELPRQPGST bmy_12242T0/1-934 RDRPGHEAPP WESASMRGLN PKILFSSREE QQGVLSKF-- ---------- BACU009118/1-1301 RDRPGHEAPP WESASMRGLN PKILFSSREE QQDILSKFGK PELPRQPGSS 851 900 ENSTTRP00000010689/1-1267 AQYDAEAGPA DAEPPELDS- LHSSGDTDRF LHTLDWREDG DCATAPEGHL ENSP00000314499/1-1311 AQYDAGAGSP EAEPTDSDSP PSSSADASRF LHTLDWQEEK EAETGAENAS ENSBTAP00000025537/1-1268 AQYDAEAGPA DAEPPESDS- PHSSVDADHF LHTLDWREDR DSSVGPEGHL bmy_12242T0/1-934 ---------- ---------- ---------- ---------- ---------- BACU009118/1-1301 AQYDAEAGPA DAEPLELDS- PHGNENADRF LHTLDWREDG DCTTDPEGHL 901 950 ENSTTRP00000010689/1-1267 AEEGPSAAAE DGRVSEPSDE EAPTLSAESG DV-ADEDTPG ---------- ENSP00000314499/1-1311 SKESESALME DRDESEVSDE GGSPISSEGQ EPRADPEPPG LAAGLVQQDL ENSBTAP00000025537/1-1268 AEEGPSAVAE DGCVSEPSDE EAPTPSAESG DT-GDEDVPA ---------- bmy_12242T0/1-934 ---------- ---------- ---------- ---------- ---------- BACU009118/1-1301 AEEGPSAAAE DGRVSEPSDE EAPTLSAESG DV-ADEDTPG ---------- 951 1000 ENSTTRP00000010689/1-1267 ---------- PDL------- ---------- ---------- -------PQE ENSP00000314499/1-1311 VFEVETPAVL PEP------- ---------- ---------- ------VPQE ENSBTAP00000025537/1-1268 ---------- PAA------- ---------- ---------- -------PQD bmy_12242T0/1-934 ---------- ---------- ---------- ---------- ---------- BACU009118/1-1301 ---------- PDLXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1001 1050 ENSTTRP00000010689/1-1267 DGVDLLGLHS E--AGPVPPT QARGGPPSNA DLLSRLLGAP AAAPEGAAGG ENSP00000314499/1-1311 DGVDLLGLHS EVGAGPAVPP QACKAPSSNT DLLSCLLGPP EAASQGPPED ENSBTAP00000025537/1-1268 DSVDLLGLHA E--AGPVPAP QAPGGPPSNA DLLGCLLGAP GPAPEGAVGG bmy_12242T0/1-934 ---------- ---------- ---------- ---------- ---------- BACU009118/1-1301 XGVALLGLHS E--AGPAPPT QARGGPPSNA DLLSRLLGAP AAAPEGAAGG 1051 1100 ENSTTRP00000010689/1-1267 LFGGDAALLF TSPASAPSTR TX-------- ---XXXXXXX XXXXXXXXXX ENSP00000314499/1-1311 LLSED-PLLL ASPAPPLSVQ STPRGGPPAA ADPFGPLLPS SGNNSQPCSN ENSBTAP00000025537/1-1268 LLDGDAALLF SSPAPAPCTQ TT-----APA ADPFGPLLLP PDVDTPPSSQ bmy_12242T0/1-934 ---------- ---------- ---------- ---------- ---------- BACU009118/1-1301 LLGGDAALLF TSPASAPSAR TT-----VPA ADPFDPLLP- SDPDTQPHSQ 1101 1150 ENSTTRP00000010689/1-1267 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXD LPAEPSKMTT ENSP00000314499/1-1311 PDLFGEFLNS DS-VTVPPSF PSAHSAPPPS CSADFLHLGD LPGEPSKMTA ENSBTAP00000025537/1-1268 PDLFGEFLNS DAPAAQPAPF PSTHSAPPPA CSTDFLHLGD LPAEPSKMTA bmy_12242T0/1-934 ---------- ---------- ---------- ---------- ---------- BACU009118/1-1301 PDLFGEFLNS DSPATLPASF PATHSAPPLA RGTDFLHLAD LPAEPSKMTA 1151 1200 ENSTTRP00000010689/1-1267 STSHPDLLGG WDAWAE---- APAPTPAAEX XXXXXXXXXX XXXXXXXXXX ENSP00000314499/1-1311 SSSNPDLLGG WAAWTETAAS AVAPTPATEG PLFSPGGQPA PCGSQASWTK ENSBTAP00000025537/1-1268 SASHPDLLGA WDAWAE---- APAPALAADG TFFSPGDQPA PSGLPAGQTK bmy_12242T0/1-934 ---------- ---------- ---------- ---------- ---------- BACU009118/1-1301 STSHPDLLGG WDAWAE---- APAPAPAAEG PFVSPGGQPA PPGPPASQTK 1201 1250 ENSTTRP00000010689/1-1267 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000314499/1-1311 SQNPDPFADL GDLSSGLQGS PAGFPPGGFI PKTATTPKGS SSWQTSRPPA ENSBTAP00000025537/1-1268 SQSQDPFADL GDLSAGLQGS PAAAAPGGFG PKAAPPPKAS SSWQTSRPPA bmy_12242T0/1-934 ---------- --------GS PAAPAPGGFG PKTVPPPKAS GSWQMSRPPA BACU009118/1-1301 SQSQDPFADL GDLSSGLQGS PAAPAPGGFG PKTVPPPKAS GSWQMSRPPA 1251 1300 ENSTTRP00000010689/1-1267 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXPKPRVS ENSP00000314499/1-1311 QGASWPPQAK PPPKACTQPR PNYASNFSVI GAREERGVRA PSFAQKPKVS ENSBTAP00000025537/1-1268 QGTPWPPQAK PPPKASVPPR PNYTSSFSVI GSREERGVRA PSFGPKPRVS bmy_12242T0/1-934 QGTPWPPQAK PTPRASVQPR PNYTSSFSVI GSREERGVRA PGFGPKPRVS BACU009118/1-1301 QGTPWPPQAK PTPRASVQPR PNYTSSFSVI GSREERGVRA PGFGPKPRVS 1301 1350 ENSTTRP00000010689/1-1267 ENDFEDLLSN QGFSSRADRK GPRTIAEMRR QDQARDSDPL KLKLLDWTEG ENSP00000314499/1-1311 ENDFEDLLSN QGFSSRSDKK GPKTIAEMRK QDLAKDTDPL KLKLLDWIEG ENSBTAP00000025537/1-1268 ENDFEDLLSN QGFSSRADRK GPRTIAEMRR QDQARDLDPL KLKLLEWTEG bmy_12242T0/1-934 ENDFEDLLSN QGFSSRADRK GPRTIAEMRR QDQARDSDPL KLKLLDWTEG BACU009118/1-1301 ENDFEDLLSN QGFSSRADRK GPRTIAEMRR QDQARDSDPL KLKLLDWTEG 1351 1400 ENSTTRP00000010689/1-1267 KERNIRALLS TLHTVLWDDE SRWTPVGMAD LVTPAQVKKQ YRRAVLVVHP ENSP00000314499/1-1311 KERNIRALLS TLHTVLWDGE SRWTPVGMAD LVAPEQVKKH YRRAVLAVHP ENSBTAP00000025537/1-1268 KERNIRALLS TLHTALWDGE SRWTPVGMAD LVTPAQVKKH YRRAVLVVHP bmy_12242T0/1-934 KERNIRALLS TLHTALWDDE RRWTPVGMAD LVTPAQVKKH YRRAVLVVHP BACU009118/1-1301 KERNIRALLS TLHTALWDDE RRWTPVGMAD LVTPAQVKKH YRRAVLVVHP 1401 1450 ENSTTRP00000010689/1-1267 DKARGQPYEQ HARMVFMELS DAWAEFESQG SRPLF ENSP00000314499/1-1311 DKAAGQPYEQ HAKMIFMELN DAWSEFENQG SRPLF ENSBTAP00000025537/1-1268 DKARGQPYEQ YARMIFMELN DAWAEFESQG SRPLF bmy_12242T0/1-934 DKARGQPYEQ YARMIFMELN DAWAEFESQG SRPLF BACU009118/1-1301 DKARGQPYEQ YARMIFMELN DAWAEFESQG SRPLF