KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:39 2014 Check: 00 .. Name: ENSTTRP00000014585/1-354 Len: 422 Check: 7817 Weight: 1.00 Name: bmy_17311T0/1-387 Len: 422 Check: 7118 Weight: 1.00 Name: ENSP00000294638/1-356 Len: 422 Check: 6490 Weight: 1.00 Name: ENSBTAP00000025544/1-371 Len: 422 Check: 8716 Weight: 1.00 Name: BACU009961/1-331 Len: 422 Check: 174 Weight: 1.00 // 1 50 ENSTTRP00000014585/1-354 ---------- ---------- ---LLSWCQG LMSEECGRTA ALAAGRTRKG bmy_17311T0/1-387 ---------- ---------- ---------- -MSEECGRTA ALAAGRTRKG ENSP00000294638/1-356 ---------- ---------- -MQILSRCQG LMSEECGRTT ALAAGRTRKG ENSBTAP00000025544/1-371 MYWKSDQMFV CKLEEKDVLE LAVPLEKCQG LMSEECGRTA ALAAGRTRKG BACU009961/1-331 ---------- ---------- -------CQG LMSEECGRTA ALAAGRTRKG 51 100 ENSTTRP00000014585/1-354 AGEEGLVSPE GVGDEDXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17311T0/1-387 AGEEGLVSPE GVADEDSCSS SAPLSPSSSP RSMASGSVCP PGKCVCNSCG ENSP00000294638/1-356 AGEEGLVSPE GAGDEDSCSS SAPLSPSSSP RSMASGSGCP PGKCVCNSCG ENSBTAP00000025544/1-371 AGEEGLVSPE GVGDEDSCSS SAPLSPSSSP RSMASGSVCP PGKCVCSSCG BACU009961/1-331 AGEEGLVSPE GVGDEDSCSS SAPLSPSSSP RSMASGSVCP PGKCVCNSCG 101 150 ENSTTRP00000014585/1-354 XXXXXXXXXX VN-DLCWHVR CLSCSVCRTS LGRHTSCYIK DKDI------ bmy_17311T0/1-387 LEIVDKYLLK FSLENVDFLS TTAQSGATHA VGKSGRRNLR IPAVTKLLTL ENSP00000294638/1-356 LEIVDKYLLK VN-DLCWHVR CLSCSVCRTS LGRHTSCYIK DKDI------ ENSBTAP00000025544/1-371 LEIVDKYLLK VN-DLCWHVR CLSCSVCRTS LGRHTSCYIK DKDI------ BACU009961/1-331 LEIVDKYLLK VN-DLCWHVR CLSCSVCRTS LGRHTSCYIK DKDI------ 151 200 ENSTTRP00000014585/1-354 -FCKL----D YFRRYGTRCS RCGRHIHSTD WVRRAKGNVY HLACFACFSC bmy_17311T0/1-387 KMCRLYNDSN SLRRYGTRCS RCGRHIHSTD WVRRAKGNVY HLACFACFSC ENSP00000294638/1-356 -FCKL----D YFRRYGTRCS RCGRHIHSTD WVRRAKGNVY HLACFACFSC ENSBTAP00000025544/1-371 -FCKL----D YFRRYGTRCS RCGRHIHSTD WVRRAKGNVY HLACFACFSC BACU009961/1-331 -FCKL----D YFRRYGTRCS RCGRHIHSTD WVRRAKGNVY HLACFACFSC 201 250 ENSTTRP00000014585/1-354 KRQLSTGEEF ALVEEKVLCR VHYDCMLDNL KREVENGNGI SVEGALLTEQ bmy_17311T0/1-387 KRQLSTGEEF ALVEEKVLCR VHYDCMLDNL KREVENGNGI SVEGALLTEQ ENSP00000294638/1-356 KRQLSTGEEF ALVEEKVLCR VHYDCMLDNL KREVENGNGI SVEGALLTEQ ENSBTAP00000025544/1-371 KRQLSTGEEF ALVEEKVLCR VHYDCMLDNL KREVENGNGI SVEGALLTEQ BACU009961/1-331 KRQLSTGEEF ALVEEKVLCR VHYDCMLDNL KREVENGNGI SVEGALLTEQ 251 300 ENSTTRP00000014585/1-354 DVNHPKPAKR ARTSFTADQL --QVMQAQFA QDNNPDAQTL QKLAERTGLS bmy_17311T0/1-387 DVNHPKPAKR ARTSFTADQL --QVMQAQFA QDNNPDAQTL QKLAERTGLS ENSP00000294638/1-356 DVNHPKPAKR ARTSFTADQL --QVMQAQFA QDNNPDAQTL QKLAERTGLS ENSBTAP00000025544/1-371 DVNHPKPAKR ARTSFTADQL QKQVMQAQFA QDNNPDAQTL QKLAERTGLS BACU009961/1-331 DVNHPKPAKR ARTSFTADQL --QVMQAQFA QDNNPDAQTL QKLAERTGLS 301 350 ENSTTRP00000014585/1-354 RRVIQVWFQN CRARHKKHVS PNHSSSAPVT AVPPSRLSPP MLEEMAYSAY bmy_17311T0/1-387 RRVIQVWFQN CRARHKKHVS PNHSSSAPVT AVPPSRLSPP MLEEMAYSAY ENSP00000294638/1-356 RRVIQVWFQN CRARHKKHVS PNHSSSTPVT AVPPSRLSPP MLEEMAYSAY ENSBTAP00000025544/1-371 RRVIQVWFQN CRARHKKHVS PNHSSSAPVT AVPPSRLSPP MLEEMAYSAY BACU009961/1-331 RRVIQVWFQN CRARHKKHVS PNHSSSAPVT AVPPSRLSPP MLEEMAYSAY 351 400 ENSTTRP00000014585/1-354 VPQDGTMLTA LHSYMDAHSP TTLGL----- ---------- ---------- bmy_17311T0/1-387 VPQDGTMLTA LHSYMDAF-P TSLCCPVQGI GKNDKQGDKD HLRDTEWLRE ENSP00000294638/1-356 VPQDGTMLTA LHSYMDAHSP TTLGL----- ---------- ---------- ENSBTAP00000025544/1-371 VPQDGTMLTA LHSYMDEL-- ----I----- ---------- ---------- BACU009961/1-331 VPQDGTMLTA LHSYMDG--- ---------- ---------- ---------- 401 450 ENSTTRP00000014585/1-354 ------QPLL PHSMTQLPIS HT bmy_17311T0/1-387 KEHDESEALL MDRIERLQLL H- ENSP00000294638/1-356 ------QPLL PHSMTQLPIS HT ENSBTAP00000025544/1-371 ------HQQL LDSSPCYPIQ -- BACU009961/1-331 ---------- -----RYPDI --