KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:26:43 2014 Check: 00 .. Name: bmy_08411T0/1-1526 Len: 1875 Check: 3512 Weight: 1.00 Name: ENSBTAP00000025590/1-1760 Len: 1875 Check: 7238 Weight: 1.00 Name: BACU017617/1-1750 Len: 1875 Check: 5304 Weight: 1.00 Name: ENSTTRP00000006731/1-1786 Len: 1875 Check: 474 Weight: 1.00 // 1 50 bmy_08411T0/1-1526 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025590/1-1760 ---------- ---------- ---------- ---QVFAFDY CFWSMDESNT BACU017617/1-1750 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006731/1-1786 LELNTKCVVE MEGNQTVLHP PPSNTKQGEX XXXQVFAFDY CFWSMDESNT 51 100 bmy_08411T0/1-1526 ----MNRMYL VTVVEG---- -------CFA SY-------- ---------- ENSBTAP00000025590/1-1760 TKYAGQEVVF KCLGEGILEK AFQGYNACIF AYGQTGSGKS FSMMGNAEQR BACU017617/1-1750 --FLGQEVVF KCLGEGILEK AFQGYNACIF AYGQTGSGKS FSMMGSAEQR ENSTTRP00000006731/1-1786 TKYAGQEVVF KCLGEGILEK AFQGYNACIF AYGQTGSGKS FSMMGNAEQR 101 150 bmy_08411T0/1-1526 ---------- --IVTLGKSE ARVVQV---- ---------- ---------- ENSBTAP00000025590/1-1760 GLIPRLCCAL FQRISLEQNE SQTFKVEVSY MEIYNEKVRD LLDPKGSRQS BACU017617/1-1750 GLIPRLCCAL FQRISLEQNE SQTFKVEVSY MEIYNEKVRD LLDPKGSRQS ENSTTRP00000006731/1-1786 GLIPRLCCAL FQRISLEQNE SQTFKVEVSY MEIYNEKVRD LLDPKGSRQS 151 200 bmy_08411T0/1-1526 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025590/1-1760 LKVREHKVLG PYVDGLSQLA VTSFEDIESL MSEGNKSRTV AATNMNEESS BACU017617/1-1750 LKVREHKVLG PYVDGLSQLA VTSFEDIESL MSEGNKSRTV AATNMNEESS ENSTTRP00000006731/1-1786 LKVREHKVLG PYVDGLSQLA VTSFEDIESL MSEGNKSRTV AATNMNEESS 201 250 bmy_08411T0/1-1526 ---------- ---------- ---------- ---------- --------RL ENSBTAP00000025590/1-1760 RSHAVFNIVI TQTLYDLQSG NSGEKVSKVS LVDLAGSERV SKTGAAGERL BACU017617/1-1750 RSHAVFNIII TQTLYDLQSG NSGEKVSKVS LVDLAGSERV SKTGAAGERL ENSTTRP00000006731/1-1786 RSHAVFNIII TQTLYDLQSG NSGEKVSKVS LVDLAGSERV SKTGAAGERL 251 300 bmy_08411T0/1-1526 KE------SL TTLGLVISSL ADQAAGKGKN KFVPYRDSVL TWLLKDNLGG ENSBTAP00000025590/1-1760 KEGSNINKSL TTLGLVISSL ADQAAGKGKN KFVPYRDSVL TWLLKDNLGG BACU017617/1-1750 KEGSNINKSL TTLGLVISSL ADQAAGKGKN KFVPYRDSVL TWLLKDNLGG ENSTTRP00000006731/1-1786 KEGSNINKSL TTLGLVISSL ADQAAGKGKN KFVPYRDSVL TWLLKDNLGG 301 350 bmy_08411T0/1-1526 NSQTSMIATI SPAADNYEET LSTLRYADRA KRIVNHAIVN EDPNAKVIRE ENSBTAP00000025590/1-1760 NSQTSMIATI SPAADNYEET LSTLRYADRA KRIVNHAVVN EDPNAKVIRE BACU017617/1-1750 NSQTSMIATI SPAADNYEET LSTLRYADRA KRIVNHAIVN EDPNAKVIRE ENSTTRP00000006731/1-1786 NSQTSMIATI SPAADNYEET LSTLRYADRA KRIVNHAVVN EDPNAKVIRE 351 400 bmy_08411T0/1-1526 LREEVEKLRE QLSQAEAMKA PELKEKLEES EKLIRELT-- ---------- ENSBTAP00000025590/1-1760 LREEVEKLRE QLSQAEAMKA PELKEKLEES EKLIKELTVT WEEKLRKTEE BACU017617/1-1750 LREEVEKLRE QLSQAEAMKA PELKEKLEES EKLIRELTVT WEEKLRKTEE ENSTTRP00000006731/1-1786 LREEVEKLRE QLSQAEAMKA PELKEKLEES EKLIRELTVT WEEKLRKTEE 401 450 bmy_08411T0/1-1526 ---ERQRQLE SMGISLETSG IKVGDDKCYL VNLNADPALN ELLVYYLKDH ENSBTAP00000025590/1-1760 IAQERQRQLE SMGISLETSG IKVGDDKCYL VNLNADPALN ELLVYYLKDH BACU017617/1-1750 IAQERQRQLE SMGISLETSG IKVGDDKCYL VNLNADPALN ELLVYYLKDH ENSTTRP00000006731/1-1786 IAQERQRQLE SMGISLETSG IKVGDDKCYL VNLNADPALN ELLVYYLKDH 451 500 bmy_08411T0/1-1526 TRVGADTSQD IQLFGIGIQP EHCEIDIASD GEVTLTPKEN A--------- ENSBTAP00000025590/1-1760 TRVGADTSQD IQLFGIGIQP EHCEIDIGSD GEVSLTPKEN ARSCVNGTLV BACU017617/1-1750 TRVGADTSQD IQLFGIGIQP EHCEIDIASD GEVTLTPKEN ARSCVNGTLV ENSTTRP00000006731/1-1786 TRVGADTSQD IQLFGIGIQP EHCEIDIASD GEVTLTPKEN ARSCVNGTLV 501 550 bmy_08411T0/1-1526 ---------- ---------- RINLPKRKRR DWLKDFEKET GPPEHDLDAA ENSBTAP00000025590/1-1760 CSTTQLWHGD RILWGNNHFF RINLPKRKRR DWLKDFEKET GPPEHDLDAA BACU017617/1-1750 CSTTQLWHGD RILWGNNHFF RINLPKRKRR DWLKDFEKET GPAEHDLDAA ENSTTRP00000006731/1-1786 CSTTQLWHGD RILWGNNHFF RINLPKRKRR DWLKDFEKET GPPEHDLDAA 551 600 bmy_08411T0/1-1526 SEASSEPDYN YEFAQMEVIM KTLNSN---D PVQNVVQVLE KQYLEEKRSA ENSBTAP00000025590/1-1760 SEASSEPDYN YEFAQMEVIM KTLNSNGLPD PVQNVVQVLE KQYLEEKRSA BACU017617/1-1750 SEASSEPDYN YEFAQMEVIM KTLNSN---D PVQNVVQVLE KQYLEEKRSA ENSTTRP00000006731/1-1786 SEASSEPDYN YEFAQMEVIM KTLNSN---D PVQNVVQVLE KQYLEEKRSA 601 650 bmy_08411T0/1-1526 LEEQRLMYER ELEQLRQQLS PERRPQSSGP DRLAYSSQTA QQKVTQWAEE ENSBTAP00000025590/1-1760 LEEQRLMYER ELEQLRQQLS PERQPQISGP DRLAYSSQTA QQKVTQWAEE BACU017617/1-1750 LEEQRLMYER ELEQLRQQLS PERRPQSSGP DRLAYSSQTA QQKVTQWAEE ENSTTRP00000006731/1-1786 LEEQRLMYER ELEQLRQQLS PERRPQSSGP DRLAYSSQTA QQKVTQWAEE 651 700 bmy_08411T0/1-1526 RDELFRQSLA KLREQLVKAN TLVREANFLA EEMSRLTDYQ VTLQIPAANL ENSBTAP00000025590/1-1760 RDELFRQSLA KLREQLVKAN TLVREANFLA EEMSKLTDYQ VTLQIPAANL BACU017617/1-1750 RDELFRQSLA KLREQLVKAN TLVREANFLA EEMSRLTDYQ VTLQIPAANL ENSTTRP00000006731/1-1786 RDELFRQSLA KLREQLVKAN TLVREANFLA EEMSRLTDYQ VTLQIPAANL 701 750 bmy_08411T0/1-1526 SANRK----- ------VRRK GKSTQVWTIE KLENKLIDMR DLYQEWKEKV ENSBTAP00000025590/1-1760 SANRKRGAIV SEPAIQVRRK GKSTQVWTIE KLENKLIDMR DLYQEWKEKI BACU017617/1-1750 SANRKRGAIV SEPAIQVRRK GKSTQVWTIE KLENKLIDMR DLYQEWKEKV ENSTTRP00000006731/1-1786 SANRKRGAIV SEPAIQVRRK GKSTQVWTIE KLENKLIDMR DLYQEWKEKV 751 800 bmy_08411T0/1-1526 PETKRLYGKR GDPFYEAQEN HNLIGVANVF LECLFCDVKL LYAVPIISQQ ENSBTAP00000025590/1-1760 PEAKRLCGKR GDPFYEAQEN HNLIGVANVF LECLFCDVKL QYAVPIISQQ BACU017617/1-1750 PETKRVYGKR GDPFYEAQEN HNLIGVANVF LECLFCDVKL LYAVPIISQQ ENSTTRP00000006731/1-1786 PETKRLYGKR GDPFYEAQEN HNLIGVANVF LECLFCDVKL LYAVPIISQQ 801 850 bmy_08411T0/1-1526 GEVAGRLHVE VMRVTGAVPE RVVEDDSSEN SSESGSLEVV DSSGEIIHRV ENSBTAP00000025590/1-1760 GEVAGRLHVE VMRVTGAVPE RMAEDDSSEN SSESGSLEVV DSTGEIIHRV BACU017617/1-1750 GEVAGRLHVE VMRVTGAVPE RMAEDDSSEN SSESGSLEVV DSSGEIIHRV ENSTTRP00000006731/1-1786 GEVAGRLHVE VMRVTGAVPE RVVEDDSSEN SSESGSLEVV DSSGEIIHRV 851 900 bmy_08411T0/1-1526 KKLTCRVKIK EATGLPLNLS NFVFCQYTFW DQCESTVAAP VVDPEVPSPQ ENSBTAP00000025590/1-1760 KKLTCRVKIK EATGLPLNLS NFVFCQYTFW DQCEPTVAAP VVDPEVPSPQ BACU017617/1-1750 KKLTCRVKIK EATGLPLNLS NFVFCQYTFW DQCESTVAAP VVDPEVPSPQ ENSTTRP00000006731/1-1786 KKLTCRVKIK EATGLPLNLS NFVFCQYTFW DQCESTVAAP VVDPEVPSPQ 901 950 bmy_08411T0/1-1526 SKDAQYTVTF SHCKDYVVSV TEEFLEFISD GALAIEVWGH RCTGNGSSVW ENSBTAP00000025590/1-1760 SKDAQYTVTF SHCQDYVVNV TEEFLEFISD GALAIEVWGH RCTGNGSSIW BACU017617/1-1750 SKDAQYTVTF SHCKDYVVSV TEEFLEFISD GALAIEVWGH RCTGNGSSVW ENSTTRP00000006731/1-1786 SKDAQYTVTF SHCKDYVVSV TEEFLEFISD GALAIEVWGH RCTGNGSSVW 951 1000 bmy_08411T0/1-1526 EVDSLHAKTR TLHDRWNEVT RRIEMWISIL ELNELGEYAA VELHQAKDVN ENSBTAP00000025590/1-1760 EVDSLHAKTR TLHDRWNEVT RRIEMWISIL ELNELGEYAA VELHQAKDVN BACU017617/1-1750 EVDSLHAKTR TLHDRWNEVT RRIEMWISIL ELNELGEYAA VELHQAKDVN ENSTTRP00000006731/1-1786 EVDSLHAKTR TLHDRWNEVT RRIEMWISIL ELNELGEYAA VELHQAKDVN 1001 1050 bmy_08411T0/1-1526 TGGVFQLRQG HSRRVQVTVK PVQHSGTLPL MVEAILSISI GCVTARSTKL ENSBTAP00000025590/1-1760 TGGVLQLRQG HSRRVQVTVK PVQHSGTLPL MVEAILSISI GCITARSTKL BACU017617/1-1750 TGGVFQLRQG HSRRVQVTVK PVQHSGTLPL MVEAILSISI GCVTARSTKL ENSTTRP00000006731/1-1786 TGGVFQLRQG HSRRVQVTVK PVQRSGTLPL MVEAILSISI GCVTARSTKL 1051 1100 bmy_08411T0/1-1526 QRGLDSYQRD DEDGDDMDSY QEEDLNCVRE RWSDALIKRR EYLDEQIKKV ENSBTAP00000025590/1-1760 QRGLDSYQRD DEDGDDMDSY QEEDLNCVRE RWSDALIKRR EYLDEQIKKV BACU017617/1-1750 QRGLDSYQRD DEDGDDMDSY QEEDLNCVRE RWSDALIKRR EYLDEQIKKV ENSTTRP00000006731/1-1786 QRGLDSYQXX XXXXXXXXXX XEEDLNCVRE RWSDALIKRR EYLDEQIKKV 1101 1150 bmy_08411T0/1-1526 SNKKEKTEDD VEREARLVEQ WVGLTEERNA VLVPAPGSGI PGAPADWIPP ENSBTAP00000025590/1-1760 SNKKEKTEDD VEREARLVEQ WVGLTEERNA VLVPAPGSGI PGAPADWIPP BACU017617/1-1750 SNKKEKTEDD VEREARLVEQ WVGLTEERNA VLVPAPGSGI PGAPADWIPP ENSTTRP00000006731/1-1786 SNKKEKTEDD VEREARLVEQ WVGLTEERNA VLVPAPGSGI PGAPADWIPP 1151 1200 bmy_08411T0/1-1526 PGMETHIPVL FLDLNADDLS ANEQLVGPHA SGVNSILPKE HGSQFFYLPI ENSBTAP00000025590/1-1760 PGMETHIPVL FLDLNADDLS ANEQLVGPHA SGVNSILPKE HGSQFFYLPI BACU017617/1-1750 PGMETHIPVL FLDLNADDLS ANEQLVGPHA SGVNSILPKE HGSQFFYLPI ENSTTRP00000006731/1-1786 PGMETHIPVL FLDLNADDLS ANEQLVGPHA SGVNSILPKE HGSQFFYLPI 1201 1250 bmy_08411T0/1-1526 IKHSDEEVSA TASWDSSVHD SVHLNRVTPQ NERIYLIVKT TVQLSHPAAM ENSBTAP00000025590/1-1760 IKHSDEEVSA TASWDSSVHD SVHLNRVTPQ NERIYLIVKT TVQLSHPAAM BACU017617/1-1750 IKHSDEEVSA TASWDSSVHD SVHLNRVTPQ NERIYLIVKT TVQLSHPAAM ENSTTRP00000006731/1-1786 IKHSDEEVSA TASWDSSVHD SVHLNRVTPQ NERIYLIVKT TVQLSHPAAM 1251 1300 bmy_08411T0/1-1526 ELVLRKRIAA NIYNKQSFTQ SLKRRISLKN IFYSCGVTYE IVSNIPKATE ENSBTAP00000025590/1-1760 ELVLRKRIAA NIYNKQSFTQ SLKRRISLKN IFYSCGVTYE IVSNIPKATE BACU017617/1-1750 ELILRKRIAA NIYNKQSFTQ SLKRRISLKN IFYSCGVTYE IVSNIPKATE ENSTTRP00000006731/1-1786 ELVLRKRIAA NIYNKQSFTQ SLKRRISLKN IFYSCGVTYE IVSNIPKATE 1301 1350 bmy_08411T0/1-1526 EIEDRETLAL LAARSENEGT ADGETYIEKY TRGVLQ---- ---------- ENSBTAP00000025590/1-1760 EIEDRETLAL MAARSENEGT SDGETYIEKY TRGVLQVENI LSLERLRQAV BACU017617/1-1750 EIEDRETLAL LAARSENEGT ADGETYIEKY TRGVLQVENI LSLERLRQAI ENSTTRP00000006731/1-1786 EIEDRETLAL LAARSENEGT ADGETYIEKY TRGVLQVENI LSLERLRQAV 1351 1400 bmy_08411T0/1-1526 ---------- ---------- ----VSSSRP DLSGFDDDDK ---------- ENSBTAP00000025590/1-1760 TVKEALSTKA RHLRRSLSTP NVHNVSSSRP DLSGFDDDDK GWPENQLDMS BACU017617/1-1750 TVKEALSTKA RHLRRSLSTP NVHNVSSSRP DLSGFDDDDK GWPENQLDMS ENSTTRP00000006731/1-1786 TVKEALSTKA RHLRRSLSTP NVHNVSSSRP DLSGFDDDDK GWPENQLDMS 1401 1450 bmy_08411T0/1-1526 -------DVS CYGTLPRDSP RRSKEGCTSE NPHALTVSPF KAFSPQPPKF ENSBTAP00000025590/1-1760 DYSPSYQDVS CYGTLPRDSP RRSKEGCTSE NPHALTVSPF KAFSPQPPKF BACU017617/1-1750 DYSPSYQDVS CYGTLPRDSP RRSKEGCTSE NPHALTVSPF KAFSPQPPKF ENSTTRP00000006731/1-1786 DYSPSYQDVS CYGTLPRDSP RRSKEGCTSE NPHALTVSPF KAFSPQPPKF 1451 1500 bmy_08411T0/1-1526 FKPLMPVKEE HKKRMALEAR PLLSQESMSP PQAHNPGCIV PSGSNGSSMP ENSBTAP00000025590/1-1760 FKPLMPVKEE HKKRIALEAR PLLSQESMSP SQAHNPGCIV PSGSNGSSMP BACU017617/1-1750 FKPLMPVKEE HKKRMALEAR PLLSQESMSP PQAHNPGCIV PSGSNGSSMP ENSTTRP00000006731/1-1786 FKPLMPVKEE HKKRMALEAR PLLSQESMSP PQAHNPGCIV PSGSNGSSMP 1501 1550 bmy_08411T0/1-1526 VEHNSKREKK IDSEEEENDL EALNRKLISS QPYVPVEFAD FSVYNASLEN ENSBTAP00000025590/1-1760 VELNSKREKK IDSEEEENDL EGLSRKLISS QPYVPVEFAD FSVYNASLEN BACU017617/1-1750 VEHNSKREKK IDSEEEENDL EALNRKLISS QPYVPVEFAD FSVYNASLEN ENSTTRP00000006731/1-1786 VEHNSKRGKK IDSEEEENDL EALNRKLISS QPYVPVEFAD FSVYNASLEN 1551 1600 bmy_08411T0/1-1526 REWFSSKVDL TNSKVLEKEV SCSPTTSSIT SGYFSHSASX ATLSDMVVPS ENSBTAP00000025590/1-1760 REWFSSKGDL TNSKVLEKEV SRSPTTSSIT SGYFSHSASN ATLSDMVVPS BACU017617/1-1750 REWFSSKVDL TNSKVLEKEV SCSPTTSSIT SGYFSHSASN ATLSDMVVPC ENSTTRP00000006731/1-1786 REWFSSKVDL TNSKVLEKEV SCSPTTSSIT SGYFSHSASN ATLSDMVVPS 1601 1650 bmy_08411T0/1-1526 SDSSDQLALQ TKDADTSEHP GASLVHDFRP SSNKELTELE RGLVKDKITX ENSBTAP00000025590/1-1760 SDSSDQLALP TKDTDSSEHP GPSLGQDFRP SSNKELTELE RGLGKDKMTV BACU017617/1-1750 SDSSDQLALQ TKDADTSEHP GASLVQDFRP SSNKELTELE RGLVKDKITV ENSTTRP00000006731/1-1786 SDSSDQLALQ TKDADSSEHP GASLVHDFRP SSNKELTELE RGLVKDKITM 1651 1700 bmy_08411T0/1-1526 VPLKENSALA KGSPSSQSIP EKNSKTHCRT SSCSEQDACS SKNGQPAREF ENSBTAP00000025590/1-1760 VPLKENSALA KGSPLSPSIP EKNSRTLCRT SSCSEQDACS SKNGQPAREF BACU017617/1-1750 VPLKENSALA KGSPSSQSFP EKNSKTHCRT SSCSEQDACS SKSGQPAREF ENSTTRP00000006731/1-1786 VPLKENSALA KGSPSSQSIP EKNSKTCCRT SSCSEQDACS SKNGQPAREF 1701 1750 bmy_08411T0/1-1526 CPREVLLSVI T-FLRIFSFG ARFIPCVEYI LELDPPDLTP ARRSRGFWGH ENSBTAP00000025590/1-1760 CPREVTVEHT TNILEDHSF- ------TEFM GVSDGKD--- ------FDG- BACU017617/1-1750 CPREVTIEHT TNILEDHSF- ------TEFM GVSDGKD--- ------FDG- ENSTTRP00000006731/1-1786 CPREVTIEHT TNILEDHSF- ------TEFM GVSDGRD--- ------FDG- 1751 1800 bmy_08411T0/1-1526 LLSPPEPAEA ALGHSAESAA S--AFFQRTE NPGLMKWHMS GDRQVCTLKW ENSBTAP00000025590/1-1760 -LTDSSAGEL SSRRNLPNTA DSRSFSHGPQ DPG------- ---QLCS--- BACU017617/1-1750 -LTDPSAGEL SSRRNLPNTT DSKSVSDGPQ DPG------- ---QLCS--- ENSTTRP00000006731/1-1786 -LTDPSAGEL PSRRNLPNTM DSKSVSDGPQ DPG------- ---QLCS--- 1801 1850 bmy_08411T0/1-1526 GGKWFVENRK QRLQNAVLYN QRTYIGLNVF AVHSCFMCTH VFDCKFGAIR ENSBTAP00000025590/1-1760 ---------- -SAENDQVIN SRVDE----- ---------- ---------- BACU017617/1-1750 ---------- -SAENDQVIN SRGSL----- ---------- ---------- ENSTTRP00000006731/1-1786 ---------- -SAKSDQVII ---------- ---------- ---------- 1851 1900 bmy_08411T0/1-1526 PLAPRPRAAV LCPVS----- ----- ENSBTAP00000025590/1-1760 ---PSWTMLT CCP------- ----- BACU017617/1-1750 ---SGPVLSV SAPNCAPTAR GPSSQ ENSTTRP00000006731/1-1786 ---PGAVFRV LCYQ------ -----