KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:26:43 2014 Check: 00 ..
Name: bmy_08411T0/1-1526 Len: 1875 Check: 3512 Weight: 1.00
Name: ENSBTAP00000025590/1-1760 Len: 1875 Check: 7238 Weight: 1.00
Name: BACU017617/1-1750 Len: 1875 Check: 5304 Weight: 1.00
Name: ENSTTRP00000006731/1-1786 Len: 1875 Check: 474 Weight: 1.00
//
1 50
bmy_08411T0/1-1526 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000025590/1-1760 ---------- ---------- ---------- ---QVFAFDY CFWSMDESNT
BACU017617/1-1750 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000006731/1-1786 LELNTKCVVE MEGNQTVLHP PPSNTKQGEX XXXQVFAFDY CFWSMDESNT
51 100
bmy_08411T0/1-1526 ----MNRMYL VTVVEG---- -------CFA SY-------- ----------
ENSBTAP00000025590/1-1760 TKYAGQEVVF KCLGEGILEK AFQGYNACIF AYGQTGSGKS FSMMGNAEQR
BACU017617/1-1750 --FLGQEVVF KCLGEGILEK AFQGYNACIF AYGQTGSGKS FSMMGSAEQR
ENSTTRP00000006731/1-1786 TKYAGQEVVF KCLGEGILEK AFQGYNACIF AYGQTGSGKS FSMMGNAEQR
101 150
bmy_08411T0/1-1526 ---------- --IVTLGKSE ARVVQV---- ---------- ----------
ENSBTAP00000025590/1-1760 GLIPRLCCAL FQRISLEQNE SQTFKVEVSY MEIYNEKVRD LLDPKGSRQS
BACU017617/1-1750 GLIPRLCCAL FQRISLEQNE SQTFKVEVSY MEIYNEKVRD LLDPKGSRQS
ENSTTRP00000006731/1-1786 GLIPRLCCAL FQRISLEQNE SQTFKVEVSY MEIYNEKVRD LLDPKGSRQS
151 200
bmy_08411T0/1-1526 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000025590/1-1760 LKVREHKVLG PYVDGLSQLA VTSFEDIESL MSEGNKSRTV AATNMNEESS
BACU017617/1-1750 LKVREHKVLG PYVDGLSQLA VTSFEDIESL MSEGNKSRTV AATNMNEESS
ENSTTRP00000006731/1-1786 LKVREHKVLG PYVDGLSQLA VTSFEDIESL MSEGNKSRTV AATNMNEESS
201 250
bmy_08411T0/1-1526 ---------- ---------- ---------- ---------- --------RL
ENSBTAP00000025590/1-1760 RSHAVFNIVI TQTLYDLQSG NSGEKVSKVS LVDLAGSERV SKTGAAGERL
BACU017617/1-1750 RSHAVFNIII TQTLYDLQSG NSGEKVSKVS LVDLAGSERV SKTGAAGERL
ENSTTRP00000006731/1-1786 RSHAVFNIII TQTLYDLQSG NSGEKVSKVS LVDLAGSERV SKTGAAGERL
251 300
bmy_08411T0/1-1526 KE------SL TTLGLVISSL ADQAAGKGKN KFVPYRDSVL TWLLKDNLGG
ENSBTAP00000025590/1-1760 KEGSNINKSL TTLGLVISSL ADQAAGKGKN KFVPYRDSVL TWLLKDNLGG
BACU017617/1-1750 KEGSNINKSL TTLGLVISSL ADQAAGKGKN KFVPYRDSVL TWLLKDNLGG
ENSTTRP00000006731/1-1786 KEGSNINKSL TTLGLVISSL ADQAAGKGKN KFVPYRDSVL TWLLKDNLGG
301 350
bmy_08411T0/1-1526 NSQTSMIATI SPAADNYEET LSTLRYADRA KRIVNHAIVN EDPNAKVIRE
ENSBTAP00000025590/1-1760 NSQTSMIATI SPAADNYEET LSTLRYADRA KRIVNHAVVN EDPNAKVIRE
BACU017617/1-1750 NSQTSMIATI SPAADNYEET LSTLRYADRA KRIVNHAIVN EDPNAKVIRE
ENSTTRP00000006731/1-1786 NSQTSMIATI SPAADNYEET LSTLRYADRA KRIVNHAVVN EDPNAKVIRE
351 400
bmy_08411T0/1-1526 LREEVEKLRE QLSQAEAMKA PELKEKLEES EKLIRELT-- ----------
ENSBTAP00000025590/1-1760 LREEVEKLRE QLSQAEAMKA PELKEKLEES EKLIKELTVT WEEKLRKTEE
BACU017617/1-1750 LREEVEKLRE QLSQAEAMKA PELKEKLEES EKLIRELTVT WEEKLRKTEE
ENSTTRP00000006731/1-1786 LREEVEKLRE QLSQAEAMKA PELKEKLEES EKLIRELTVT WEEKLRKTEE
401 450
bmy_08411T0/1-1526 ---ERQRQLE SMGISLETSG IKVGDDKCYL VNLNADPALN ELLVYYLKDH
ENSBTAP00000025590/1-1760 IAQERQRQLE SMGISLETSG IKVGDDKCYL VNLNADPALN ELLVYYLKDH
BACU017617/1-1750 IAQERQRQLE SMGISLETSG IKVGDDKCYL VNLNADPALN ELLVYYLKDH
ENSTTRP00000006731/1-1786 IAQERQRQLE SMGISLETSG IKVGDDKCYL VNLNADPALN ELLVYYLKDH
451 500
bmy_08411T0/1-1526 TRVGADTSQD IQLFGIGIQP EHCEIDIASD GEVTLTPKEN A---------
ENSBTAP00000025590/1-1760 TRVGADTSQD IQLFGIGIQP EHCEIDIGSD GEVSLTPKEN ARSCVNGTLV
BACU017617/1-1750 TRVGADTSQD IQLFGIGIQP EHCEIDIASD GEVTLTPKEN ARSCVNGTLV
ENSTTRP00000006731/1-1786 TRVGADTSQD IQLFGIGIQP EHCEIDIASD GEVTLTPKEN ARSCVNGTLV
501 550
bmy_08411T0/1-1526 ---------- ---------- RINLPKRKRR DWLKDFEKET GPPEHDLDAA
ENSBTAP00000025590/1-1760 CSTTQLWHGD RILWGNNHFF RINLPKRKRR DWLKDFEKET GPPEHDLDAA
BACU017617/1-1750 CSTTQLWHGD RILWGNNHFF RINLPKRKRR DWLKDFEKET GPAEHDLDAA
ENSTTRP00000006731/1-1786 CSTTQLWHGD RILWGNNHFF RINLPKRKRR DWLKDFEKET GPPEHDLDAA
551 600
bmy_08411T0/1-1526 SEASSEPDYN YEFAQMEVIM KTLNSN---D PVQNVVQVLE KQYLEEKRSA
ENSBTAP00000025590/1-1760 SEASSEPDYN YEFAQMEVIM KTLNSNGLPD PVQNVVQVLE KQYLEEKRSA
BACU017617/1-1750 SEASSEPDYN YEFAQMEVIM KTLNSN---D PVQNVVQVLE KQYLEEKRSA
ENSTTRP00000006731/1-1786 SEASSEPDYN YEFAQMEVIM KTLNSN---D PVQNVVQVLE KQYLEEKRSA
601 650
bmy_08411T0/1-1526 LEEQRLMYER ELEQLRQQLS PERRPQSSGP DRLAYSSQTA QQKVTQWAEE
ENSBTAP00000025590/1-1760 LEEQRLMYER ELEQLRQQLS PERQPQISGP DRLAYSSQTA QQKVTQWAEE
BACU017617/1-1750 LEEQRLMYER ELEQLRQQLS PERRPQSSGP DRLAYSSQTA QQKVTQWAEE
ENSTTRP00000006731/1-1786 LEEQRLMYER ELEQLRQQLS PERRPQSSGP DRLAYSSQTA QQKVTQWAEE
651 700
bmy_08411T0/1-1526 RDELFRQSLA KLREQLVKAN TLVREANFLA EEMSRLTDYQ VTLQIPAANL
ENSBTAP00000025590/1-1760 RDELFRQSLA KLREQLVKAN TLVREANFLA EEMSKLTDYQ VTLQIPAANL
BACU017617/1-1750 RDELFRQSLA KLREQLVKAN TLVREANFLA EEMSRLTDYQ VTLQIPAANL
ENSTTRP00000006731/1-1786 RDELFRQSLA KLREQLVKAN TLVREANFLA EEMSRLTDYQ VTLQIPAANL
701 750
bmy_08411T0/1-1526 SANRK----- ------VRRK GKSTQVWTIE KLENKLIDMR DLYQEWKEKV
ENSBTAP00000025590/1-1760 SANRKRGAIV SEPAIQVRRK GKSTQVWTIE KLENKLIDMR DLYQEWKEKI
BACU017617/1-1750 SANRKRGAIV SEPAIQVRRK GKSTQVWTIE KLENKLIDMR DLYQEWKEKV
ENSTTRP00000006731/1-1786 SANRKRGAIV SEPAIQVRRK GKSTQVWTIE KLENKLIDMR DLYQEWKEKV
751 800
bmy_08411T0/1-1526 PETKRLYGKR GDPFYEAQEN HNLIGVANVF LECLFCDVKL LYAVPIISQQ
ENSBTAP00000025590/1-1760 PEAKRLCGKR GDPFYEAQEN HNLIGVANVF LECLFCDVKL QYAVPIISQQ
BACU017617/1-1750 PETKRVYGKR GDPFYEAQEN HNLIGVANVF LECLFCDVKL LYAVPIISQQ
ENSTTRP00000006731/1-1786 PETKRLYGKR GDPFYEAQEN HNLIGVANVF LECLFCDVKL LYAVPIISQQ
801 850
bmy_08411T0/1-1526 GEVAGRLHVE VMRVTGAVPE RVVEDDSSEN SSESGSLEVV DSSGEIIHRV
ENSBTAP00000025590/1-1760 GEVAGRLHVE VMRVTGAVPE RMAEDDSSEN SSESGSLEVV DSTGEIIHRV
BACU017617/1-1750 GEVAGRLHVE VMRVTGAVPE RMAEDDSSEN SSESGSLEVV DSSGEIIHRV
ENSTTRP00000006731/1-1786 GEVAGRLHVE VMRVTGAVPE RVVEDDSSEN SSESGSLEVV DSSGEIIHRV
851 900
bmy_08411T0/1-1526 KKLTCRVKIK EATGLPLNLS NFVFCQYTFW DQCESTVAAP VVDPEVPSPQ
ENSBTAP00000025590/1-1760 KKLTCRVKIK EATGLPLNLS NFVFCQYTFW DQCEPTVAAP VVDPEVPSPQ
BACU017617/1-1750 KKLTCRVKIK EATGLPLNLS NFVFCQYTFW DQCESTVAAP VVDPEVPSPQ
ENSTTRP00000006731/1-1786 KKLTCRVKIK EATGLPLNLS NFVFCQYTFW DQCESTVAAP VVDPEVPSPQ
901 950
bmy_08411T0/1-1526 SKDAQYTVTF SHCKDYVVSV TEEFLEFISD GALAIEVWGH RCTGNGSSVW
ENSBTAP00000025590/1-1760 SKDAQYTVTF SHCQDYVVNV TEEFLEFISD GALAIEVWGH RCTGNGSSIW
BACU017617/1-1750 SKDAQYTVTF SHCKDYVVSV TEEFLEFISD GALAIEVWGH RCTGNGSSVW
ENSTTRP00000006731/1-1786 SKDAQYTVTF SHCKDYVVSV TEEFLEFISD GALAIEVWGH RCTGNGSSVW
951 1000
bmy_08411T0/1-1526 EVDSLHAKTR TLHDRWNEVT RRIEMWISIL ELNELGEYAA VELHQAKDVN
ENSBTAP00000025590/1-1760 EVDSLHAKTR TLHDRWNEVT RRIEMWISIL ELNELGEYAA VELHQAKDVN
BACU017617/1-1750 EVDSLHAKTR TLHDRWNEVT RRIEMWISIL ELNELGEYAA VELHQAKDVN
ENSTTRP00000006731/1-1786 EVDSLHAKTR TLHDRWNEVT RRIEMWISIL ELNELGEYAA VELHQAKDVN
1001 1050
bmy_08411T0/1-1526 TGGVFQLRQG HSRRVQVTVK PVQHSGTLPL MVEAILSISI GCVTARSTKL
ENSBTAP00000025590/1-1760 TGGVLQLRQG HSRRVQVTVK PVQHSGTLPL MVEAILSISI GCITARSTKL
BACU017617/1-1750 TGGVFQLRQG HSRRVQVTVK PVQHSGTLPL MVEAILSISI GCVTARSTKL
ENSTTRP00000006731/1-1786 TGGVFQLRQG HSRRVQVTVK PVQRSGTLPL MVEAILSISI GCVTARSTKL
1051 1100
bmy_08411T0/1-1526 QRGLDSYQRD DEDGDDMDSY QEEDLNCVRE RWSDALIKRR EYLDEQIKKV
ENSBTAP00000025590/1-1760 QRGLDSYQRD DEDGDDMDSY QEEDLNCVRE RWSDALIKRR EYLDEQIKKV
BACU017617/1-1750 QRGLDSYQRD DEDGDDMDSY QEEDLNCVRE RWSDALIKRR EYLDEQIKKV
ENSTTRP00000006731/1-1786 QRGLDSYQXX XXXXXXXXXX XEEDLNCVRE RWSDALIKRR EYLDEQIKKV
1101 1150
bmy_08411T0/1-1526 SNKKEKTEDD VEREARLVEQ WVGLTEERNA VLVPAPGSGI PGAPADWIPP
ENSBTAP00000025590/1-1760 SNKKEKTEDD VEREARLVEQ WVGLTEERNA VLVPAPGSGI PGAPADWIPP
BACU017617/1-1750 SNKKEKTEDD VEREARLVEQ WVGLTEERNA VLVPAPGSGI PGAPADWIPP
ENSTTRP00000006731/1-1786 SNKKEKTEDD VEREARLVEQ WVGLTEERNA VLVPAPGSGI PGAPADWIPP
1151 1200
bmy_08411T0/1-1526 PGMETHIPVL FLDLNADDLS ANEQLVGPHA SGVNSILPKE HGSQFFYLPI
ENSBTAP00000025590/1-1760 PGMETHIPVL FLDLNADDLS ANEQLVGPHA SGVNSILPKE HGSQFFYLPI
BACU017617/1-1750 PGMETHIPVL FLDLNADDLS ANEQLVGPHA SGVNSILPKE HGSQFFYLPI
ENSTTRP00000006731/1-1786 PGMETHIPVL FLDLNADDLS ANEQLVGPHA SGVNSILPKE HGSQFFYLPI
1201 1250
bmy_08411T0/1-1526 IKHSDEEVSA TASWDSSVHD SVHLNRVTPQ NERIYLIVKT TVQLSHPAAM
ENSBTAP00000025590/1-1760 IKHSDEEVSA TASWDSSVHD SVHLNRVTPQ NERIYLIVKT TVQLSHPAAM
BACU017617/1-1750 IKHSDEEVSA TASWDSSVHD SVHLNRVTPQ NERIYLIVKT TVQLSHPAAM
ENSTTRP00000006731/1-1786 IKHSDEEVSA TASWDSSVHD SVHLNRVTPQ NERIYLIVKT TVQLSHPAAM
1251 1300
bmy_08411T0/1-1526 ELVLRKRIAA NIYNKQSFTQ SLKRRISLKN IFYSCGVTYE IVSNIPKATE
ENSBTAP00000025590/1-1760 ELVLRKRIAA NIYNKQSFTQ SLKRRISLKN IFYSCGVTYE IVSNIPKATE
BACU017617/1-1750 ELILRKRIAA NIYNKQSFTQ SLKRRISLKN IFYSCGVTYE IVSNIPKATE
ENSTTRP00000006731/1-1786 ELVLRKRIAA NIYNKQSFTQ SLKRRISLKN IFYSCGVTYE IVSNIPKATE
1301 1350
bmy_08411T0/1-1526 EIEDRETLAL LAARSENEGT ADGETYIEKY TRGVLQ---- ----------
ENSBTAP00000025590/1-1760 EIEDRETLAL MAARSENEGT SDGETYIEKY TRGVLQVENI LSLERLRQAV
BACU017617/1-1750 EIEDRETLAL LAARSENEGT ADGETYIEKY TRGVLQVENI LSLERLRQAI
ENSTTRP00000006731/1-1786 EIEDRETLAL LAARSENEGT ADGETYIEKY TRGVLQVENI LSLERLRQAV
1351 1400
bmy_08411T0/1-1526 ---------- ---------- ----VSSSRP DLSGFDDDDK ----------
ENSBTAP00000025590/1-1760 TVKEALSTKA RHLRRSLSTP NVHNVSSSRP DLSGFDDDDK GWPENQLDMS
BACU017617/1-1750 TVKEALSTKA RHLRRSLSTP NVHNVSSSRP DLSGFDDDDK GWPENQLDMS
ENSTTRP00000006731/1-1786 TVKEALSTKA RHLRRSLSTP NVHNVSSSRP DLSGFDDDDK GWPENQLDMS
1401 1450
bmy_08411T0/1-1526 -------DVS CYGTLPRDSP RRSKEGCTSE NPHALTVSPF KAFSPQPPKF
ENSBTAP00000025590/1-1760 DYSPSYQDVS CYGTLPRDSP RRSKEGCTSE NPHALTVSPF KAFSPQPPKF
BACU017617/1-1750 DYSPSYQDVS CYGTLPRDSP RRSKEGCTSE NPHALTVSPF KAFSPQPPKF
ENSTTRP00000006731/1-1786 DYSPSYQDVS CYGTLPRDSP RRSKEGCTSE NPHALTVSPF KAFSPQPPKF
1451 1500
bmy_08411T0/1-1526 FKPLMPVKEE HKKRMALEAR PLLSQESMSP PQAHNPGCIV PSGSNGSSMP
ENSBTAP00000025590/1-1760 FKPLMPVKEE HKKRIALEAR PLLSQESMSP SQAHNPGCIV PSGSNGSSMP
BACU017617/1-1750 FKPLMPVKEE HKKRMALEAR PLLSQESMSP PQAHNPGCIV PSGSNGSSMP
ENSTTRP00000006731/1-1786 FKPLMPVKEE HKKRMALEAR PLLSQESMSP PQAHNPGCIV PSGSNGSSMP
1501 1550
bmy_08411T0/1-1526 VEHNSKREKK IDSEEEENDL EALNRKLISS QPYVPVEFAD FSVYNASLEN
ENSBTAP00000025590/1-1760 VELNSKREKK IDSEEEENDL EGLSRKLISS QPYVPVEFAD FSVYNASLEN
BACU017617/1-1750 VEHNSKREKK IDSEEEENDL EALNRKLISS QPYVPVEFAD FSVYNASLEN
ENSTTRP00000006731/1-1786 VEHNSKRGKK IDSEEEENDL EALNRKLISS QPYVPVEFAD FSVYNASLEN
1551 1600
bmy_08411T0/1-1526 REWFSSKVDL TNSKVLEKEV SCSPTTSSIT SGYFSHSASX ATLSDMVVPS
ENSBTAP00000025590/1-1760 REWFSSKGDL TNSKVLEKEV SRSPTTSSIT SGYFSHSASN ATLSDMVVPS
BACU017617/1-1750 REWFSSKVDL TNSKVLEKEV SCSPTTSSIT SGYFSHSASN ATLSDMVVPC
ENSTTRP00000006731/1-1786 REWFSSKVDL TNSKVLEKEV SCSPTTSSIT SGYFSHSASN ATLSDMVVPS
1601 1650
bmy_08411T0/1-1526 SDSSDQLALQ TKDADTSEHP GASLVHDFRP SSNKELTELE RGLVKDKITX
ENSBTAP00000025590/1-1760 SDSSDQLALP TKDTDSSEHP GPSLGQDFRP SSNKELTELE RGLGKDKMTV
BACU017617/1-1750 SDSSDQLALQ TKDADTSEHP GASLVQDFRP SSNKELTELE RGLVKDKITV
ENSTTRP00000006731/1-1786 SDSSDQLALQ TKDADSSEHP GASLVHDFRP SSNKELTELE RGLVKDKITM
1651 1700
bmy_08411T0/1-1526 VPLKENSALA KGSPSSQSIP EKNSKTHCRT SSCSEQDACS SKNGQPAREF
ENSBTAP00000025590/1-1760 VPLKENSALA KGSPLSPSIP EKNSRTLCRT SSCSEQDACS SKNGQPAREF
BACU017617/1-1750 VPLKENSALA KGSPSSQSFP EKNSKTHCRT SSCSEQDACS SKSGQPAREF
ENSTTRP00000006731/1-1786 VPLKENSALA KGSPSSQSIP EKNSKTCCRT SSCSEQDACS SKNGQPAREF
1701 1750
bmy_08411T0/1-1526 CPREVLLSVI T-FLRIFSFG ARFIPCVEYI LELDPPDLTP ARRSRGFWGH
ENSBTAP00000025590/1-1760 CPREVTVEHT TNILEDHSF- ------TEFM GVSDGKD--- ------FDG-
BACU017617/1-1750 CPREVTIEHT TNILEDHSF- ------TEFM GVSDGKD--- ------FDG-
ENSTTRP00000006731/1-1786 CPREVTIEHT TNILEDHSF- ------TEFM GVSDGRD--- ------FDG-
1751 1800
bmy_08411T0/1-1526 LLSPPEPAEA ALGHSAESAA S--AFFQRTE NPGLMKWHMS GDRQVCTLKW
ENSBTAP00000025590/1-1760 -LTDSSAGEL SSRRNLPNTA DSRSFSHGPQ DPG------- ---QLCS---
BACU017617/1-1750 -LTDPSAGEL SSRRNLPNTT DSKSVSDGPQ DPG------- ---QLCS---
ENSTTRP00000006731/1-1786 -LTDPSAGEL PSRRNLPNTM DSKSVSDGPQ DPG------- ---QLCS---
1801 1850
bmy_08411T0/1-1526 GGKWFVENRK QRLQNAVLYN QRTYIGLNVF AVHSCFMCTH VFDCKFGAIR
ENSBTAP00000025590/1-1760 ---------- -SAENDQVIN SRVDE----- ---------- ----------
BACU017617/1-1750 ---------- -SAENDQVIN SRGSL----- ---------- ----------
ENSTTRP00000006731/1-1786 ---------- -SAKSDQVII ---------- ---------- ----------
1851 1900
bmy_08411T0/1-1526 PLAPRPRAAV LCPVS----- -----
ENSBTAP00000025590/1-1760 ---PSWTMLT CCP------- -----
BACU017617/1-1750 ---SGPVLSV SAPNCAPTAR GPSSQ
ENSTTRP00000006731/1-1786 ---PGAVFRV LCYQ------ -----