KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:49 2014 Check: 00 .. Name: bmy_00856T0/1-266 Len: 437 Check: 990 Weight: 1.00 Name: ENSBTAP00000025617/1-257 Len: 437 Check: 6156 Weight: 1.00 Name: ENSP00000369081/1-432 Len: 437 Check: 1701 Weight: 1.00 Name: BACU005134/1-324 Len: 437 Check: 4201 Weight: 1.00 Name: ENSTTRP00000015109/1-434 Len: 437 Check: 6020 Weight: 1.00 // 1 50 bmy_00856T0/1-266 MSARAGDLLP PRPRALAPAA PLLLLLLLLL LDAGGGRGGA WAQE-PGAAA ENSBTAP00000025617/1-257 ---------- ---------- ---------- ---------- ---------- ENSP00000369081/1-432 MPARPGRLLP LLAR---PAA L-TALLLLLL GHGGGGRWGA RAQEAAAAAA BACU005134/1-324 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015109/1-434 MSARAGGFLP PRPRALAPAA P-LLLLLLLL LDAGGGRGGA WAQE-PGSAV 51 100 bmy_00856T0/1-266 DGLPAADGGD GQDPHAKYLY TADMFTHGIH SAAHFVMFFA PWCGHCQRLQ ENSBTAP00000025617/1-257 ---------- ---------- ---------- ---------- ---------- ENSP00000369081/1-432 DGPPAADGED GQDPHSKHLY TADMFTHGIQ SAAHFVMFFA PWCGHCQRLQ BACU005134/1-324 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015109/1-434 DVDPAADGGD GQDPHAKHLY TADMFTHGIQ SAAHFVMFFA PWCGHCQRLQ 101 150 bmy_00856T0/1-266 PTWNDLGDKY NSMEDAKVYV AKVDCTVDSD LCSAQGVRGY PTLKFFRPGQ ENSBTAP00000025617/1-257 ---------- ---------- ---------- ---------- -SLKFFKPGQ ENSP00000369081/1-432 PTWNDLGDKY NSMEDAKVYV AKVDCTAHSD VCSAQGVRGY PTLKLFKPGQ BACU005134/1-324 ---------- --MEDAKVYV AKVDCTADSD LCSAQGVRGY PTLKFFRPGQ ENSTTRP00000015109/1-434 PTWNDLGDKY NSMEDAKVYV AKVDCTASSD VCSAQGVRGY PTLKFFKPGQ 151 200 bmy_00856T0/1-266 EAVKYQGPRD FQALENWMLQ TLNEEPP--- ---------- FNTGL----- ENSBTAP00000025617/1-257 EAVKYQGPRD FQALEKWMLQ TLNEEPPTPE PAVEPPRTPE LKQGLYELSA ENSP00000369081/1-432 EAVKYQGPRD FQTLENWMLQ TLNEEPVTPE PEVEPPSAPE LKQGLYELSA BACU005134/1-324 EAVKYQGPRD FQALENWMLQ TLNEEPPTPE PEVGPPQAPE LKQGLYELSA ENSTTRP00000015109/1-434 EAVKYQGPRD FQALENWMLQ TLNEEPPTPE PEVEPPRAPE LKQGLYELSA 201 250 bmy_00856T0/1-266 ---DWGIAS- GDHFIKFFAP WCGHCKALAP TWEHLALGLE HSETVKIGKV ENSBTAP00000025617/1-257 GNFELHVAQE GDHFIKFFAP WCGHCKALAP TWEQLALGLE HSETVKIGKV ENSP00000369081/1-432 SNFELHVAQ- GDHFIKFFAP WCGHCKALAP TWEQLALGLE HSETVKIGKV BACU005134/1-324 SNFEAHVAQ- GDHFIKFFAP WCGHCKALAP TWEQLALGLE HSEAVKIGEV ENSTTRP00000015109/1-434 GNFDLHVAQ- GDHFIKFFAP WCGHCKALAP TWEQLALGLE HSETVKIGKV 251 300 bmy_00856T0/1-266 DCTQHYELCS GNQVRGYPAL LWFRDGKKDD V--------- ---------- ENSBTAP00000025617/1-257 DCTQHYELCS GNQVRGYPTL LWFRDGKKVD QYKGKRDLDS LREYVQSQLQ ENSP00000369081/1-432 DCTQHYELCS GNQVRGYPTL LWFRDGKKVD QYKGKRDLES LREYVESQLQ BACU005134/1-324 DCTQHYELCS GNQVRGYPAL LWFRDGKKVD QYKGKRDLES LREYVASQLQ ENSTTRP00000015109/1-434 DCTQHHELCS GNQVRGYPAL LWFRDGKKVD QYKGKRDLES LREYVASQLQ 301 350 bmy_00856T0/1-266 ---------- ---------- ------GVVI KVKH------ ---------- ENSBTAP00000025617/1-257 SAGPAAPEPT QPSEAPALAA EPAADQGTVL ALTERNFDDA IAEGVTFIKF ENSP00000369081/1-432 RTETGATETV TPSEAPVLAA EPEADKGTVL ALTENNFDDT IAEGITFIKF BACU005134/1-324 SVERGALEPV QPSEAPVLAA EPAADQGTVL ALTEKNFDDT IAEGITFVKF ENSTTRP00000015109/1-434 STERGAPEPI QPSEAPTLAT EPAADQGTVL ALTENNFDDT IAEGITFVKF 351 400 bmy_00856T0/1-266 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025617/1-257 YAPWCGHCKD LAPTWEDLSK KEFPGLAEVT IAEVDCTAER NLCSKYSV-- ENSP00000369081/1-432 YAPWCGHCKT LAPTWEELSK KEFPGLAGVK IAEVDCTAER NICSKYSVRG BACU005134/1-324 YAPWCGHCKN LAPTWEELSK KEFPGLAEVK IAELDCTAER NICSKYSVRG ENSTTRP00000015109/1-434 YAPWCGHCKS LAPTWEELSK KEFPGLAGVK IAELDCTAER NICSKYSVRG 401 450 bmy_00856T0/1-266 ---------- ---------- ---------- ------- ENSBTAP00000025617/1-257 ---------- ---------- ---------- ------- ENSP00000369081/1-432 YPTLLLFRGG KKVSEHSGGR DLDSLHRFVL SQAKDEL BACU005134/1-324 YPTLLLFRGG KKVSEHSGGR DLDSLHRFVL RQAKDEL ENSTTRP00000015109/1-434 YPTLLLFRGG KKVSEHSGGQ DLDSLHHFVL HQAKDEL