KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:50 2014 Check: 00 .. Name: BACU001246/1-258 Len: 356 Check: 9992 Weight: 1.00 Name: bmy_01746T0/1-306 Len: 356 Check: 9429 Weight: 1.00 Name: ENSP00000293829/1-225 Len: 356 Check: 541 Weight: 1.00 Name: ENSTTRP00000013484/1-124 Len: 356 Check: 9191 Weight: 1.00 Name: ENSBTAP00000025622/1-225 Len: 356 Check: 1767 Weight: 1.00 // 1 50 BACU001246/1-258 ---------- ---------- ---------- ---------- -----MAAPA bmy_01746T0/1-306 SGPVGEASSR TGESRPCPGE LAGFSGGAQR APGACRFWGV SSRGAMAALA ENSP00000293829/1-225 ---------- ---------- ---------- ---------- -----MAALA ENSTTRP00000013484/1-124 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025622/1-225 ---------- ---------- ---------- ---------- -----MAALA 51 100 BACU001246/1-258 SSLIRQKREV REPGGSRPVS AQRRVCPRGT KSLCQKQLLI LLSKVRLCGG bmy_01746T0/1-306 SSLIRQKREV REPGGSRPVS AQRRVCPRGT KSLCQKQLLI LLSKVRLCGG ENSP00000293829/1-225 SSLIRQKREV REPGGSRPVS AQRRVCPRGT KSLCQKQLLI LLSKVRLCGG ENSTTRP00000013484/1-124 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025622/1-225 SSLIRQKREV REPGGSRPVS AQRRVCPRGT KSLCQKQLLI LLSKVRLCGG 101 150 BACU001246/1-258 RPARPDRCPA HFKLIPVGLR VVTIQSAKLG HYMAMNAEGL LYSSWVRSAA bmy_01746T0/1-306 RPAGPDRC-- ---------- ---------- ---------- ---------- ENSP00000293829/1-225 RPARPDRG-- ---------- ---------- ---------- ---------- ENSTTRP00000013484/1-124 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025622/1-225 RPARTDRG-- ---------- ---------- ---------- ---------- 151 200 BACU001246/1-258 HPLSGTQPPQ PQLKGIVTKL FCCQGFYLQA KPDGSIQGTP EDTSSFTHFK bmy_01746T0/1-306 --------PE PQLKGIVTKL FCCQGFYLQA NPDGSIQGTP EDTSSLTHFN ENSP00000293829/1-225 --------PE PQLKGIVTKL FCRQGFYLQA NPDGSIQGTP EDTSSFTHFN ENSTTRP00000013484/1-124 ---------- ---------- ---------- ---------- -------HFN ENSBTAP00000025622/1-225 --------PE PQLKGIVTKL FCRQGFYLQA NPDGSIQGTP EDTSSFTHFN 201 250 BACU001246/1-258 LIPVGLRVVT IQSAKLGHYM AMNAEGLLYS SPHFTAEYRF KECVSENYYV bmy_01746T0/1-306 LIPVGLRVVT IQSAKLGHYM AMNAEGLLYS SPHFTAEXRF KECVFENYYV ENSP00000293829/1-225 LIPVGLRVVT IQSAKLGHYM AMNAEGLLYS SPHFTAECRF KECVFENYYV ENSTTRP00000013484/1-124 LIPVGLRVVT IQSAKLGHYV AMNAEGLLYS SPHFTAECRF KECVFENYYV ENSBTAP00000025622/1-225 LIPVGLRVVT IQSAKLGHYM AMNAEGLLYS SPHFTAECRF KECVFENYYV 251 300 BACU001246/1-258 LYASALYRQR RSGRSWYLGL DKEGRVMKGN RVKKTKAAAH FVPKLLEAVY bmy_01746T0/1-306 LYASALYRQH RSGRSWYLGL DKEGRVMKGN RVKKTKAAAH FVPKLLEVAV ENSP00000293829/1-225 LYASALYRQR RSGRAWYLGL DKEGQVMKGN RVKKTKAAAH FLPKLLEVAM ENSTTRP00000013484/1-124 LYASALYRQR RSGRAWYLGL DKEGRVMKGN RVKKTKAAAH FVPKLLEVAV ENSBTAP00000025622/1-225 LYASALYRQR RSGRAWYLGL DKEGRVMKGN RVKKTKAAAH FVPKLLEVAM 301 350 BACU001246/1-258 YKA------- ---------- ---------- ---------- ---------- bmy_01746T0/1-306 YREPSLHSVP ETSPSRPPAP CHAVPGLEAP CPRHHHSLSP SPASGPALTP ENSP00000293829/1-225 YQEPSLHSVP EASPSSPPAP ---------- ---------- ---------- ENSTTRP00000013484/1-124 YREPSLHSVP ETSPSSPPAP C--------- ---------- ---------- ENSBTAP00000025622/1-225 YREPSLHSVP ETSPSSPPAP ---------- ---------- ---------- 351 400 BACU001246/1-258 ------ bmy_01746T0/1-306 AATLMP ENSP00000293829/1-225 ------ ENSTTRP00000013484/1-124 ------ ENSBTAP00000025622/1-225 ------