KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:53 2014 Check: 00 .. Name: ENSTTRP00000001107/1-657 Len: 661 Check: 1129 Weight: 1.00 Name: ENSP00000219070/1-660 Len: 661 Check: 3099 Weight: 1.00 Name: ENSBTAP00000025657/1-661 Len: 661 Check: 4937 Weight: 1.00 Name: bmy_02338T0/1-482 Len: 661 Check: 1816 Weight: 1.00 Name: BACU001858/1-584 Len: 661 Check: 9620 Weight: 1.00 // 1 50 ENSTTRP00000001107/1-657 -TEARVARGP LAGPLRALCV LGCLLGRATA APSPIIKFPG DVAPKTDKEL ENSP00000219070/1-660 -MEALMARGA LTGPLRALCL LGCLLSHAAA APSPIIKFPG DVAPKTDKEL ENSBTAP00000025657/1-661 MTEARVSRGA LAALLRALCV LGCLLGRAAA APSPIIKFPG DIAPKTDKEL bmy_02338T0/1-482 MTEARVARGA LAGPLRALCV LGCLLGRATA APSPIIKFPG DVAPKTDKEL BACU001858/1-584 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001107/1-657 AVQYLNTFYG CPKESCNLFV LKDTLKKMQK FFGLPQTGEL DQSTIETMRK ENSP00000219070/1-660 AVQYLNTFYG CPKESCNLFV LKDTLKKMQK FFGLPQTGDL DQNTIETMRK ENSBTAP00000025657/1-661 AVQYLNTFYG CPKESCNLFV LKDTLKKMQK FFGLPQTGEL DQSTIETMRK bmy_02338T0/1-482 AV-------- ---------- --DTLKKMQK FFGLPQTGEL DQSTIETMRK BACU001858/1-584 ---------- ---------- -------MQK FFGLPQTGEL DQSTIETMRK 101 150 ENSTTRP00000001107/1-657 PRCGNPDVAN YNFFPRKPKW DKNQITYRII GYTPDLDPET VDNAFARAFR ENSP00000219070/1-660 PRCGNPDVAN YNFFPRKPKW DKNQITYRII GYTPDLDPET VDDAFARAFQ ENSBTAP00000025657/1-661 PRCGNPDVAN YNFFPRKPKW DKNQITYRII GYTPDLDPQT VDDAFARAFQ bmy_02338T0/1-482 PRCGNPDVAN YNFFPRKPKW DKNQITYRII GYTPDLDPET VDDAFARAFR BACU001858/1-584 PRCGNPDVAN YNFFPRKPKW DKNQITYRII GYTPDLDPET VDDAFARAFR 151 200 ENSTTRP00000001107/1-657 VWSDVTPLRF SRTHDGEADI MINFGRWEHG DGYPFDGKDG LLAHAFAPGP ENSP00000219070/1-660 VWSDVTPLRF SRIHDGEADI MINFGRWEHG DGYPFDGKDG LLAHAFAPGT ENSBTAP00000025657/1-661 VWSDVTPLRF SRIHDGEADI MINFGRWEHG DGYPFDGKDG LLAHAFAPGP bmy_02338T0/1-482 VWSDVTPLRF SRLHDGEADI MINFGRW--- ---------- ---------- BACU001858/1-584 VWSDVTPLRF SRLRDGEADI MINFGRWEHG DGYPFDGKDG LLAHAFAPGP 201 250 ENSTTRP00000001107/1-657 GVGGDSHFDD DELWTLGEGQ VVRVKYGNAD GEYCKFPFLF NGKEYTSCTD ENSP00000219070/1-660 GVGGDSHFDD DELWTLGEGQ VVRVKYGNAD GEYCKFPFLF NGKEYNSCTD ENSBTAP00000025657/1-661 GVGGDSHFDD DELWTLGEGQ VVRVKYGNAD GEYCKFPFRF NGKEYTSCTD bmy_02338T0/1-482 ---------- ---------- VVRVKYGNAD GEYCKFPFLF NGKEYTSCTD BACU001858/1-584 GVGGDSHFDD DELWTLGEGQ VVRVKYGNAD GEYCKFPFLF SGKEYTSCTD 251 300 ENSTTRP00000001107/1-657 TGRSDGL--- STTYNFDKDG KYGVCPHEAL FTMGGNADGQ PCKFPFRFQG ENSP00000219070/1-660 TGRSDGFLWC STTYNFEKDG KYGFCPHEAL FTMGGNAEGQ PCKFPFRFQG ENSBTAP00000025657/1-661 TGRSDGFLWC STTYNFDKDG KYGFCPHEAL FTMGGNADGQ PCKFPFRFQG bmy_02338T0/1-482 TGRSDGFLWC STTYNFDKDG KYGFCPHE-- ---------- ---------- BACU001858/1-584 TGRSDGFLWC STTYNFDKDG KYGFCPHEAL FTMGGNADGQ PCKFPFRFQG 301 350 ENSTTRP00000001107/1-657 TSYSSCTTEG RTDGYRWCGT TEDFDRDKKY GFCPETAMST VGGNSEGAPC ENSP00000219070/1-660 TSYDSCTTEG RTDGYRWCGT TEDYDRDKKY GFCPETAMST VGGNSEGAPC ENSBTAP00000025657/1-661 TSYDSCTTEG RTDGYRWCGT TEDYDRDKKY GFCPETAMST VGGNSEGAPC bmy_02338T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU001858/1-584 TSYDSCTTEG RTDGYRWCGT TEDYDRDKKY GFCPETAMST VGGNSEGAPC 351 400 ENSTTRP00000001107/1-657 VFPFTFLGNK HESCTSAGRS DGKLWCATTA NYDDDRKWGF CPDQGYSLFL ENSP00000219070/1-660 VFPFTFLGNK YESCTSAGRS DGKMWCATTA NYDDDRKWGF CPDQGYSLFL ENSBTAP00000025657/1-661 VLPFTFLGNK HESCTSAGRS DGKLWCATTS NYDDDRKWGF CPDQGYSLFL bmy_02338T0/1-482 ---------- ---------- ---------- ---------- ----GYSLFL BACU001858/1-584 VFPFTFLGNK HESCTSAGRS DGKLWCATTA NYDDDRKWGF CPDQGYSLFL 401 450 ENSTTRP00000001107/1-657 VAAHEFGHAM GLEHSEDPGA LMAPIYTYTK NFRLSHDDIK GIQELYGASP ENSP00000219070/1-660 VAAHEFGHAM GLEHSQDPGA LMAPIYTYTK NFRLSQDDIK GIQELYGASP ENSBTAP00000025657/1-661 VAAHEFGHAM GLEHSQDPGA LMAPIYTYTK NFRLSHDDIQ GIQELYGASP bmy_02338T0/1-482 VAAHEFGHAM GLEHSEDPGA LMAPIYTYTK NFRLSHDDVK GIQELYGASP BACU001858/1-584 VAAHEFGHAM GLEHSEDPGA LMAPIYTYTK NFRLSHDDVK GIQELYGGSP 451 500 ENSTTRP00000001107/1-657 DIDTGTGPTP TLGPITPEIC KQDIVFDGIX XXXXXXXXXX XXFIWRTVTP ENSP00000219070/1-660 DIDLGTGPTP TLGPVTPEIC KQDIVFDGIA QIRGEIFFFK DRFIWRTVTP ENSBTAP00000025657/1-661 DIDTGTGPTP TLGPVTPELC KQDIVFDGIS QIRGEIFFFK DRFIWRTVTP bmy_02338T0/1-482 DIDTGTGPTP TLGPITPEIC KQDIVFDGIS QIRGEIFFFK DRFIWRTVTP BACU001858/1-584 DIDTGTGPTP TLGPITPEIC KQDIVFDGIS QIRGEIFFFK DRFIWRTVTP 501 550 ENSTTRP00000001107/1-657 RDKPMGPLLV ATFWPELPEK IDAVYEAPQE EKAVFFAGNE YWVYSASTLE ENSP00000219070/1-660 RDKPMGPLLV ATFWPELPEK IDAVYEAPQE EKAVFFAGNE YWIYSASTLE ENSBTAP00000025657/1-661 RDKPTGPLLV ATFWPELPEK IDAVYEDPQE EKAVFFAGNE YWVYSASTLE bmy_02338T0/1-482 RDKPMGPLLV ATFWPELPEK IDAVYEAPQE EKAVFFAGNE YWVYSASTLE BACU001858/1-584 RDKPMGPLLV ATFWPELPEK IDAVYEAPQE EKAVFFAGNE YWVYSASTLE 551 600 ENSTTRP00000001107/1-657 RGYPKPLTSL GLPPDVQKVD AAFNWSKNKK TYIFAGDKFW RYNEVKKKMD ENSP00000219070/1-660 RGYPKPLTSL GLPPDVQRVD AAFNWSKNKK TYIFAGDKFW RYNEVKKKMD ENSBTAP00000025657/1-661 RGYPKPLTSL GLPPGVQKVD AAFNWSKNKK TYIFAGDKFW RYNEVKKKMD bmy_02338T0/1-482 RGYPKPLTSL GLPPDVQKVD AAFNWSKNKK TYIFAGDKFW RYNEVKKKMD BACU001858/1-584 RGYPKPLTSL GLPPDVQKVD AAFNWSKNKK TYIFAGDKFW RYNEVKKKMD 601 650 ENSTTRP00000001107/1-657 PGFPKLIADA WNAIPDNLDA VVDLQGGGHS YFFKGAYYLK LENQSLKSVK ENSP00000219070/1-660 PGFPKLIADA WNAIPDNLDA VVDLQGGGHS YFFKGAYYLK LENQSLKSVK ENSBTAP00000025657/1-661 PGFPKLIADA WNAIPDNLDA VVDLQGGGHS YFFKGAYYLK LENQSLKSVK bmy_02338T0/1-482 PGFPKLIADA WNAIPDNLDA VVDLQGGGHS YFFKGAYYLK LENQSLKSVK BACU001858/1-584 PGFPKLIADA WNAIPDNLDA VVDLQGGGHS YFFKGAYYLK LENQSLKSVK 651 700 ENSTTRP00000001107/1-657 FGSIKSDWLG C ENSP00000219070/1-660 FGSIKSDWLG C ENSBTAP00000025657/1-661 FGSIKSDWLG C bmy_02338T0/1-482 FGSIKSDWLG C BACU001858/1-584 FGSIKSDWLG C