KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:26:54 2014 Check: 00 ..
Name: ENSTTRP00000007827/1-334 Len: 372 Check: 8232 Weight: 1.00
Name: ENSBTAP00000025660/1-370 Len: 372 Check: 8648 Weight: 1.00
Name: bmy_22631T0/1-206 Len: 372 Check: 7978 Weight: 1.00
Name: BACU019428/1-339 Len: 372 Check: 1309 Weight: 1.00
//
1 50
ENSTTRP00000007827/1-334 MEPNEMPAVH HCPSDSATGG ETRAPQGGEL VPRRVVSRSP TCARCRSHGV
ENSBTAP00000025660/1-370 MDPSEMPAVH HCPSDSATGG ETRAPQGMEL IPRRAVSRSP TCARCRNHGV
bmy_22631T0/1-206 -----MPAVH HCPSDSATGG ETRAPQGVEL IPRRAVSRSP TCARCRGHGI
BACU019428/1-339 MEPSEMPAVH PCPSDSATGG ETRAPQGMEL IPRRAVSRSP TCARCRGHGI
51 100
ENSTTRP00000007827/1-334 TAHLKGHKRL CLFQACKCHK CVLVLERRRV MAAQVAQRRQ EEAQLKRHLA
ENSBTAP00000025660/1-370 TAHLKGHKRL CLFQACECHK CVLILERRRV MAAQVALRRQ QEAQLKRHLT
bmy_22631T0/1-206 TAHLKGHKRL CLFQACECHK CVLILERRRV MAAQVALRRQ EEAQLKRHLA
BACU019428/1-339 TAHLKGHKRL CLFQACECHK CVLILERRRV MAAQVALRRQ EEAQLKRHLA
101 150
ENSTTRP00000007827/1-334 RGQMRKGAAP PKAPGSVKKG VTQPRLHPAK ENIAPQPQTP HRAVPLALTP
ENSBTAP00000025660/1-370 QGLM-RGAAP PRAPSRVKKG VTQPGVHSGK ENIAPQPQIP HHVVPLALTS
bmy_22631T0/1-206 QGLMRRGAAP PKAPSRVKKG VTRPGVHPGK ENIAPQPQTP HRAVPLALTP
BACU019428/1-339 QGLM-RGAAP PNAPSRVKKG VTPPGVHPGK ENIAPQPQTP HRAVPLALTP
151 200
ENSTTRP00000007827/1-334 PEK-NSQGPL LLSCPPEALP LPRTPVPPGP LATGHWLPPG LSVPTPVVCR
ENSBTAP00000025660/1-370 PGKENSRGPL LLSRPPEALP LPWTPMPPGP WAPGHWLPPG LSMPTPVVCR
bmy_22631T0/1-206 PEK------- ---------- ---------- ---------- ----------
BACU019428/1-339 PEKENSRGPL LLSCRPEALP LPWTPVPPGP WAAGCWLPPG LSVPTPVVCR
201 250
ENSTTRP00000007827/1-334 LLCQEPAVPL HPFPXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSBTAP00000025660/1-370 LLCQEPAIPL HPFPGFDPGT TLRLPTHGPL PTCTGSHPIL TAPLSGESQG
bmy_22631T0/1-206 ---------- ---------- ---------- ---------- ----------
BACU019428/1-339 LLCREPAVTL HPFPGFDPGT ALWLPTHGPL PACTGSRAIL MAPLSGESQG
251 300
ENSTTRP00000007827/1-334 XXXXXXXCST LKLQPCGTPD PLLLQPQAPR ASRLDWTSDP SEWQLQWEAA
ENSBTAP00000025660/1-370 PSTLPRTCST LILQPCGTPD PLLLQPQAPG PSRLTWTSAS SEWQLQREAA
bmy_22631T0/1-206 ---------- ---------- -------APG ASHLAWTSDP SEWQLQWEAA
BACU019428/1-339 PSTLPHTCST LILQPCDTPD PLLLQPQAPG ASHLARTSDP SEWQLQWEAA
301 350
ENSTTRP00000007827/1-334 EALMGLKDSF QAPRLTPSGP SNHAWISLRH PCGPP----- ----------
ENSBTAP00000025660/1-370 EALVGLKDSS QAPRLTP-GP ANPAWISLLH PCGPPAAAGG RGFQPVGPSL
bmy_22631T0/1-206 EALVGLKDSF QAPRLTPSGP SSRAWISVLH TCGPP----- ----------
BACU019428/1-339 EALVGLKDSL QAPRLTPSGP SSRAWISVLH TCGPPG---- ----------
351 400
ENSTTRP00000007827/1-334 ---------- ---------- --
ENSBTAP00000025660/1-370 RPSPAPSVAL HIGRLGSISL LS
bmy_22631T0/1-206 ---------- ---------- --
BACU019428/1-339 ---------- --------NL FL