KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:26:54 2014 Check: 00 .. Name: ENSTTRP00000007827/1-334 Len: 372 Check: 8232 Weight: 1.00 Name: ENSBTAP00000025660/1-370 Len: 372 Check: 8648 Weight: 1.00 Name: bmy_22631T0/1-206 Len: 372 Check: 7978 Weight: 1.00 Name: BACU019428/1-339 Len: 372 Check: 1309 Weight: 1.00 // 1 50 ENSTTRP00000007827/1-334 MEPNEMPAVH HCPSDSATGG ETRAPQGGEL VPRRVVSRSP TCARCRSHGV ENSBTAP00000025660/1-370 MDPSEMPAVH HCPSDSATGG ETRAPQGMEL IPRRAVSRSP TCARCRNHGV bmy_22631T0/1-206 -----MPAVH HCPSDSATGG ETRAPQGVEL IPRRAVSRSP TCARCRGHGI BACU019428/1-339 MEPSEMPAVH PCPSDSATGG ETRAPQGMEL IPRRAVSRSP TCARCRGHGI 51 100 ENSTTRP00000007827/1-334 TAHLKGHKRL CLFQACKCHK CVLVLERRRV MAAQVAQRRQ EEAQLKRHLA ENSBTAP00000025660/1-370 TAHLKGHKRL CLFQACECHK CVLILERRRV MAAQVALRRQ QEAQLKRHLT bmy_22631T0/1-206 TAHLKGHKRL CLFQACECHK CVLILERRRV MAAQVALRRQ EEAQLKRHLA BACU019428/1-339 TAHLKGHKRL CLFQACECHK CVLILERRRV MAAQVALRRQ EEAQLKRHLA 101 150 ENSTTRP00000007827/1-334 RGQMRKGAAP PKAPGSVKKG VTQPRLHPAK ENIAPQPQTP HRAVPLALTP ENSBTAP00000025660/1-370 QGLM-RGAAP PRAPSRVKKG VTQPGVHSGK ENIAPQPQIP HHVVPLALTS bmy_22631T0/1-206 QGLMRRGAAP PKAPSRVKKG VTRPGVHPGK ENIAPQPQTP HRAVPLALTP BACU019428/1-339 QGLM-RGAAP PNAPSRVKKG VTPPGVHPGK ENIAPQPQTP HRAVPLALTP 151 200 ENSTTRP00000007827/1-334 PEK-NSQGPL LLSCPPEALP LPRTPVPPGP LATGHWLPPG LSVPTPVVCR ENSBTAP00000025660/1-370 PGKENSRGPL LLSRPPEALP LPWTPMPPGP WAPGHWLPPG LSMPTPVVCR bmy_22631T0/1-206 PEK------- ---------- ---------- ---------- ---------- BACU019428/1-339 PEKENSRGPL LLSCRPEALP LPWTPVPPGP WAAGCWLPPG LSVPTPVVCR 201 250 ENSTTRP00000007827/1-334 LLCQEPAVPL HPFPXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000025660/1-370 LLCQEPAIPL HPFPGFDPGT TLRLPTHGPL PTCTGSHPIL TAPLSGESQG bmy_22631T0/1-206 ---------- ---------- ---------- ---------- ---------- BACU019428/1-339 LLCREPAVTL HPFPGFDPGT ALWLPTHGPL PACTGSRAIL MAPLSGESQG 251 300 ENSTTRP00000007827/1-334 XXXXXXXCST LKLQPCGTPD PLLLQPQAPR ASRLDWTSDP SEWQLQWEAA ENSBTAP00000025660/1-370 PSTLPRTCST LILQPCGTPD PLLLQPQAPG PSRLTWTSAS SEWQLQREAA bmy_22631T0/1-206 ---------- ---------- -------APG ASHLAWTSDP SEWQLQWEAA BACU019428/1-339 PSTLPHTCST LILQPCDTPD PLLLQPQAPG ASHLARTSDP SEWQLQWEAA 301 350 ENSTTRP00000007827/1-334 EALMGLKDSF QAPRLTPSGP SNHAWISLRH PCGPP----- ---------- ENSBTAP00000025660/1-370 EALVGLKDSS QAPRLTP-GP ANPAWISLLH PCGPPAAAGG RGFQPVGPSL bmy_22631T0/1-206 EALVGLKDSF QAPRLTPSGP SSRAWISVLH TCGPP----- ---------- BACU019428/1-339 EALVGLKDSL QAPRLTPSGP SSRAWISVLH TCGPPG---- ---------- 351 400 ENSTTRP00000007827/1-334 ---------- ---------- -- ENSBTAP00000025660/1-370 RPSPAPSVAL HIGRLGSISL LS bmy_22631T0/1-206 ---------- ---------- -- BACU019428/1-339 ---------- --------NL FL