KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:54 2014 Check: 00 .. Name: ENSTTRP00000004023/1-590 Len: 638 Check: 925 Weight: 1.00 Name: ENSP00000236959/1-592 Len: 638 Check: 7645 Weight: 1.00 Name: ENSBTAP00000025662/1-592 Len: 638 Check: 5246 Weight: 1.00 Name: bmy_20275T0/1-638 Len: 638 Check: 5658 Weight: 1.00 Name: BACU012680/1-514 Len: 638 Check: 313 Weight: 1.00 // 1 50 ENSTTRP00000004023/1-590 ---------- ---------- ---------- ---MAPGQLA LLSVSDKTGL ENSP00000236959/1-592 ---------- ---------- ---------- ---MAPGQLA LFSVSDKTGL ENSBTAP00000025662/1-592 ---------- ---------- ---------- ---MAPGQLA LFSVSDKNGL bmy_20275T0/1-638 SFRHKFWPHR PSPPHVASPL LCPALPGVSP PAAMAPGQLA LFSVSDKTGL BACU012680/1-514 ---------- ---------- ---------- ---MAPGQLA LFSVSDKTGL 51 100 ENSTTRP00000004023/1-590 VEFARNLASV GLHLIASGGT AKALRDAGLA VRDVSEVTGF PEMLGGRVKT ENSP00000236959/1-592 VEFARNLTAL GLNLVASGGT AKALRDAGLA VRDVSELTGF PEMLGGRVKT ENSBTAP00000025662/1-592 VEFARNLASV GLNLIASGGT AKALRDAGLA VRDVSELTGF PEMLGGRVKT bmy_20275T0/1-638 VEFARNLASV GLHLIASGGT AKALRDAGLA VRDVSEVTGF PEMLGGRVKT BACU012680/1-514 VEFARDLASV GLHLIASGGT AKALRDAGLA V--------- ---------- 101 150 ENSTTRP00000004023/1-590 LHPAVHAGIL ARNIPEDNAD MARLDFSLIR VVICNLYPFA KTVASPAVTV ENSP00000236959/1-592 LHPAVHAGIL ARNIPEDNAD MARLDFNLIR VVACNLYPFV KTVASPGVTV ENSBTAP00000025662/1-592 LHPAVHAGIL ARDIPEDSAD MAKLDFNLIR VVVCNLYPFG KTVASPGVTV bmy_20275T0/1-638 LHPAVHAGIL ARNIPEDSAD MARLDFSLIR VVVCNLYPFA KTVASPAVTV BACU012680/1-514 ---------- ---------- ---------R VVVCNLYPFA KTVASPAVTV 151 200 ENSTTRP00000004023/1-590 EVAVEQIDIG GVTLLRAAAK NHTRVTVVCE PEDYAAVSSE MQGSDSKDTS ENSP00000236959/1-592 EEAVEQIDIG GVTLLRAAAK NHARVTVVCE PEDYVVVSTE MQSSESKDTS ENSBTAP00000025662/1-592 EEAVEHIDIG GVTLLRAAAK NHARVTVVCE PEDYAAVASE MQDSDSKDTS bmy_20275T0/1-638 EVAVEQIDIG GVTLLRAAAK NHTRVTVVCE PEDYAAVSSE MQGSDSKDTS BACU012680/1-514 EVAVEQIDIG GVTLLRAAAK NHTRVTVVCE PEDYAAVSSE MQGSDSKDTS 201 250 ENSTTRP00000004023/1-590 LETRRQLALK AFTHTARYDE AISDYFRKEY SKGISQMPLR YGMNPHQTPA ENSP00000236959/1-592 LETRRQLALK AFTHTAQYDE AISDYFRKQY SKGVSQMPLR YGMNPHQTPA ENSBTAP00000025662/1-592 LETRRQLALK AFTHTAQYDE AISDYFRKEY SKGVSQMPLR YGMNPHQTPA bmy_20275T0/1-638 LETRRQLALK AFTHTAQYDE AISDYFRKEY SKGISQMPLR YGMNPHQTPA BACU012680/1-514 LETRRQLALK AFTHTAQYDE AISDYFRKEY SKGISQMPLR YGMNPHQTPA 251 300 ENSTTRP00000004023/1-590 QLYTLKPKLP ITVLNGAPGF INLCDALNAW QLVKELKEAL GIPAAASFKH ENSP00000236959/1-592 QLYTLQPKLP ITVLNGAPGF INLCDALNAW QLVKELKEAL GIPAAASFKH ENSBTAP00000025662/1-592 QLYTLKPKLP ITVLNGAPGF INLCDALNAW QLVKELKEAL GLPAAASFKH bmy_20275T0/1-638 QLYTLKPKLP ITVLNGAPGF INLCDALNAW QLVKELKEAL GIPAAASFKH BACU012680/1-514 QLYTLKPKLP ITVLNGAPGF INLCDALNAW QLVKELKEAL GIPAAASFKH 301 350 ENSTTRP00000004023/1-590 VSPAGAAVGV PLSEDEAKVC MVYDMYETLT PISTAYARAR --DKVSSFGD ENSP00000236959/1-592 VSPAGAAVGI PLSEDEAKVC MVYDLYKTLT PISAAYARAR GADRMSSFGD ENSBTAP00000025662/1-592 VSPAGAAVGI PLSEDEANVC MVYDLYKTLT PVATAYARAR GADRMSSFGD bmy_20275T0/1-638 VSPAGAAVGI PLSEDEAKVC MVYDMYKTLT PXSTAYARAR GADRMSSFGD BACU012680/1-514 VSPAGAAVAI PLSEDEAKVC MVYDMYKTLT PISTAYARAR GADRMSSFGD 351 400 ENSTTRP00000004023/1-590 FVALSDICDV PTAKIISREV SDGIIAPGYE DEALKLLSKK KNGNYCVLQM ENSP00000236959/1-592 FVALSDVCDV PTAKIISREV SDGIIAPGYE EEALTILSKK KNGNYCVLQM ENSBTAP00000025662/1-592 FVALSDVCDV PTAKIISREV SDGIIAPGYE NEALKILSKK KNGNYCVLQM bmy_20275T0/1-638 FVALSDICDV PTAKIISREV SDGIIAPGYE DEALKLLSKK KNGNYCVLQM BACU012680/1-514 FVALSDICDV PTARIISRE- ---------- ---------- ---------M 401 450 ENSTTRP00000004023/1-590 DQSYSPDENE IRTLFGLRLS QKRNNSVIDR SLFSNIVTKN KD-------- ENSP00000236959/1-592 DQSYKPDENE VRTLFGLHLS QKRNNGVVDK SLFSNVVTKN KD-------- ENSBTAP00000025662/1-592 DQSYIPDENE VRTLFGLRLS QKRNNSVVNR SLFSNIVTKN KD-------- bmy_20275T0/1-638 DQSYSPDENE VRTLFGLRLS QKRNNSVVNR SLFSNIVTKN KDVSLKISEL BACU012680/1-514 DQSYSPDENE VRTLFGLRLS QKRNNSVVNR SLFSNIVTKN KD-------- 451 500 ENSTTRP00000004023/1-590 -----LPESA LRDLTVATIA VKYTQSNSVC YARDGQVIDI GAGQQSRIHC ENSP00000236959/1-592 -----LPESA LRDLIVATIA VKYTQSNSVC YAKNGQVIGI GAGQQSRIHC ENSBTAP00000025662/1-592 -----LPESA LRDLIVATIA VKYTQSNSVC YAKNGQVIGI GAGQQSRIHC bmy_20275T0/1-638 NTSNSLPESA LRDLTVATIA VKYTQSNSVC YARHGQVIGI GAGQQSRIHC BACU012680/1-514 -----LPESA LRDLTVATIA VKYTQSNSVC YARHGQVIGI GAGQQSRIHC 501 550 ENSTTRP00000004023/1-590 TRXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXSNAIDQY VTGTIGEGED ENSP00000236959/1-592 TRLAGDKANY WWLRHHPQVL SMKFKTGVKR AEISNAIDQY VTGTIGEDED ENSBTAP00000025662/1-592 TRLAGDKANC WWLRHHPQVL SMKFKTGVKR AEISNAIDQY VTGTIGEGED bmy_20275T0/1-638 TRLAGDKANY WWLRHHPQVL SMKFKTGVKR AEISNAIDQY VTGTIGEGED BACU012680/1-514 TRLAGDKANY WWLRHHPQVL SMKFKTGVKR AEISNAIDQY VTGTIGEGED 551 600 ENSTTRP00000004023/1-590 LIKWKTLFEQ VPELLTEAEK REWVDKLSEV SISSDAFFPF RDNVDRAKRS ENSP00000236959/1-592 LIKWKALFEE VPELLTEAEK KEWVEKLTEV SISSDAFFPF RDNVDRAKRS ENSBTAP00000025662/1-592 LIKWKALFEE VPELLTETEK KEWIDKLNEV SISSDAFFPF RDNVDRAKRS bmy_20275T0/1-638 LIKWKALFEQ VPELLTEAEK KEWVDKLSEV SISSDAFFPF RDNVDRAKRS BACU012680/1-514 LIKWKALFEQ VPELLTEAEK KEWVDKLSEV SISSDAFFPF RDNVDRAKRS 601 650 ENSTTRP00000004023/1-590 GVAYIAAPSG STADKVVIEA CDELGIILAH TNLRLFHH ENSP00000236959/1-592 GVAYIAAPSG SAADKVVIEA CDELGIILAH TNLRLFHH ENSBTAP00000025662/1-592 GVAYIAAPSG SAADKVVIEA CDELGIILAH TNLRLFHH bmy_20275T0/1-638 GVAYIAAPSG STADKVVIEA CDELGIILAH TNLRLFHH BACU012680/1-514 GVAYIAAPSG STADKVVIEA CDELGIILAH TNLRLFHH