KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:56 2014 Check: 00 .. Name: ENSTTRP00000000047/1-1082 Len: 1089 Check: 8421 Weight: 1.00 Name: ENSP00000257981/1-1083 Len: 1089 Check: 7236 Weight: 1.00 Name: ENSBTAP00000025668/1-1074 Len: 1089 Check: 9896 Weight: 1.00 Name: bmy_05777T0/1-1056 Len: 1089 Check: 8050 Weight: 1.00 Name: BACU008000/1-1085 Len: 1089 Check: 2445 Weight: 1.00 // 1 50 ENSTTRP00000000047/1-1082 MPAMRGLLAP QN-FLDTIVT RFDGTHSNFV LGNAQVAGLF PVVYCSDGFC ENSP00000257981/1-1083 MPAMRGLLAP QNTFLDTIAT RFDGTHSNFV LGNAQVAGLF PVVYCSDGFC ENSBTAP00000025668/1-1074 MPAMRGLLAP QNTFLDTIAT RFDGTHSNFV LGNAQVAGLF PVVYCSDGFC bmy_05777T0/1-1056 MPAMRGLLAP QNTFLDTIAT RFDGTHSNFV LGNAQVAGLF PVVYCSDGFC BACU008000/1-1085 ---MRGLLAP QNTFLDTIAT RFDGTHSNFV LGNAQVAGLF PVVYCSDGFC 51 100 ENSTTRP00000000047/1-1082 DLTGFSRAEV MQRGCACSFL YGPDTSELVR QQIRKALDEH KEFKAELILY ENSP00000257981/1-1083 DLTGFSRAEV MQRGCACSFL YGPDTSELVR QQIRKALDEH KEFKAELILY ENSBTAP00000025668/1-1074 DLTGFSRAEV MQRGCACSFL YGPDTSELVR QQIRKALDEH KEFKAELILY bmy_05777T0/1-1056 DLTGFSRAEV MQRGCACSFL YGPDTSELVR QQIRKALDEH KEFKAELILY BACU008000/1-1085 DLTGFSRAEV MQRGCACSFL YGPDTSELVR HQIRKALDEH KEFKAKLILY 101 150 ENSTTRP00000000047/1-1082 RKSGLPFWCL LDVIPIK--- --NEKGEVAL FLVSHKDISD TKNRGGPDSW ENSP00000257981/1-1083 RKSGLPFWCL LDVIPIK--- --NEKGEVAL FLVSHKDISE TKNRGGPDRW ENSBTAP00000025668/1-1074 RKSGLPFWCL LDVIPIK--- --NEKGEVAL FLVSHKDISE TKNRGGPDSW bmy_05777T0/1-1056 RKSGLPFWCL LDVIPIK--- --NEKGEVAL FLVSHKDISD TKNRGGPDSW BACU008000/1-1085 RKXXXXXXXX XXXXXXXXXX XANEKGEVAL FLVSHKDISD TKNRGGPDSW 151 200 ENSTTRP00000000047/1-1082 KETGGGRRRY GRAGSKGFNA NRRRSRAVLY HLSGHLQKQP KGKHKLNKGV ENSP00000257981/1-1083 KETGGGRRRY GRARSKGFNA NRRRSRAVLY HLSGHLQKQP KGKHKLNKGV ENSBTAP00000025668/1-1074 KESGGGRRRY GRAGSKGFNA NRRRSRAVLY HLSGHLQKQP KGKHKLNKGV bmy_05777T0/1-1056 KETGGGRRRY GRAGAKGFNA NRRRSRAVLY HLSGHLQKQP KGKHKLNKGV BACU008000/1-1085 KETGGGRRRY GRAGAKGFNA NRRRSRAVLY HLSGHLQKQP KGKHKLNKGV 201 250 ENSTTRP00000000047/1-1082 FGEKPNLPEY KVAAIRKSPF ILLHCGALRA TWDGFILLAT LYVAVTVPYS ENSP00000257981/1-1083 FGEKPNLPEY KVAAIRKSPF ILLHCGALRA TWDGFILLAT LYVAVTVPYS ENSBTAP00000025668/1-1074 FGEKPNLPEY KVAAIRKSPF ILLHCGALRA TWDGFILLAT LYVAVTVPYS bmy_05777T0/1-1056 FGEKPNLPEY KVAAIRKSPF ILLHCGALRA TWDGFILLAT LYVAVTVPYS BACU008000/1-1085 FGEKPNLPEY KVAAIRKSPF ILLHCGSLRA TWDGFILLAT LYVAVTVPYS 251 300 ENSTTRP00000000047/1-1082 VCVSTAREPS AARGPPSVCD LAVEVLFILX XXXXXXXXXX XXXXXXXXXX ENSP00000257981/1-1083 VCVSTAREPS AARGPPSVCD LAVEVLFILD IVLNFRTTFV SKSGQVVFAP ENSBTAP00000025668/1-1074 VCVSTAREPS AARGPPSVCD LAVEVLFILD IVLNFRTTFV SKSGQVVFAP bmy_05777T0/1-1056 VCVSTAREPS AARGPPSVCD LAVE------ ---------- ---------- BACU008000/1-1085 VCVSTAREPS AARGPPSVCD LAVEVLFILD IVLNFRTTFV SKSGQVVFAP 301 350 ENSTTRP00000000047/1-1082 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000257981/1-1083 KSICLHYVTT WFLLDVIAAL PFDLLHAFKV NVYFGAHLLK TVRLLRLLRL ENSBTAP00000025668/1-1074 KSICLHYVTT WFLLDVIAAL PFDLLHAFKV NVYFGAHLLK TVRLLRLLRL bmy_05777T0/1-1056 -SICLHYVST WFLLDVIAAL PFDLLHAFKV NVYFGAHLLK TVRLLRLLRL BACU008000/1-1085 KSICLHYVST WFLLDVIAAL PFDLLHAFKV NVYFGAHLLK TVRLLRLLRL 351 400 ENSTTRP00000000047/1-1082 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000257981/1-1083 LPRLDRYSQY SAVVLTLLMA VFALLAHWVA CVWFYIGQRE IESSESELPE ENSBTAP00000025668/1-1074 LPRLDRYSQY SAVVLTLLMA VFALLAHWVA CVWFYIGQRE IESSASELPE bmy_05777T0/1-1056 LPRLDRYSQY SAVVLTLLMA VFALLAHWVA CIWFYIGQRE IESSASELPE BACU008000/1-1085 LPRLDRYSQY SAVVLTLLMA VFALLAHWVA CIWFYIGQRE IESSASELPE 401 450 ENSTTRP00000000047/1-1082 XXWLQELARR LETPYYLVGR SPAIGNSSGQ SDNCSSSSSE ANRTGPELLG ENSP00000257981/1-1083 IGWLQELARR LETPYYLVGR RPAGGNSSGQ SDNCSSS-SE ANGTGLELLG ENSBTAP00000025668/1-1074 IGWLQELARR LETPYYLVGR SPAAGNSSGQ SDNCSSSFGE ANRTGPELLG bmy_05777T0/1-1056 IGWLQELARR LETPYYLVGR SPAIGNSSGQ SDNCSSSGSE ANRTGPELLG BACU008000/1-1085 IGWLQELARR LETPYYLVGR SPAIGNSSGQ SDNCSSSGSE ANRTGPELLG 451 500 ENSTTRP00000000047/1-1082 GPSLRSAYIT SLYFALSSLT SVGFGNVSAN TDTEKIFSIC TMLIGXXXXX ENSP00000257981/1-1083 GPSLRSAYIT SLYFALSSLT SVGFGNVSAN TDTEKIFSIC TMLIGALMHA ENSBTAP00000025668/1-1074 GPSLRSAYIT SLYFALSSLT SVGFGNVSAN TDTEKIFSIC TMLIGALMHA bmy_05777T0/1-1056 GPSLRSAYIT SLYFALSSLT SVGFGNVSAN TDTEKIFSIC TMLIGALMHA BACU008000/1-1085 GPSLRSAYIT SLYFALSSLT SVGFGNVSAN TDTEKIFSIC TMLIGALMHA 501 550 ENSTTRP00000000047/1-1082 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXRIPKPL KQRMLEYFQA ENSP00000257981/1-1083 VVFGNVTAII QRMYARRFLY HSRTRDLRDY IRIHRIPKPL KQRMLEYFQA ENSBTAP00000025668/1-1074 VVFGNVTAII QRMYARRFLY HSRTRDLRDY IRIHRIPKPL KQRMLEYFQA bmy_05777T0/1-1056 VVFGNVTAII QRMYARRFLY HSRTRDLRDY IRIHRIPKPL KQRMLEYFQA BACU008000/1-1085 VVFGNVTAII QRMYARRFLY HSRTRDLRDY IRIHRIPKPL KQRMLEYFQA 551 600 ENSTTRP00000000047/1-1082 TWAVNNGIDT TELLQSLPDE LRADIAMHLH KEVLQLPLFE AASRGCLRAL ENSP00000257981/1-1083 TWAVNNGIDT TELLQSLPDE LRADIAMHLH KEVLQLPLFE AASRGCLRAL ENSBTAP00000025668/1-1074 TWAVNNGIDT TELLQSLPDE LRADIAMHLH KEVLQLPLFE AASRGCLRAL bmy_05777T0/1-1056 TWAVNNGIDT TELLQSLPDE LRADIAMHLH KEVLQLPLFE AASRGCLRAL BACU008000/1-1085 TWAVNNGIDT TELLQSLPDE LRADIAMHLH KEVLQLPLFE AASRGCLRAL 601 650 ENSTTRP00000000047/1-1082 SLALRPAFCT PGEYLIHQGD ALQALYFVCS GSMEVLKGGT VLAILGKGDL ENSP00000257981/1-1083 SLALRPAFCT PGEYLIHQGD ALQALYFVCS GSMEVLKGGT VLAILGKGDL ENSBTAP00000025668/1-1074 SLALRPAFCT PGEYLIHQGD ALQALYFVCS GSMEVLKGGT VLAILGKGDL bmy_05777T0/1-1056 SLALRPAFCT PGEYLIHQGD ALQALYFVCS GSMEVLKGGT VLAILGKGDL BACU008000/1-1085 SLALRPAFCT PGEYLIHQGD ALQALYFVCS GSMEVLKGGT VLAILGKGDL 651 700 ENSTTRP00000000047/1-1082 IGCELPRREQ VVKANADVKG LTYCVLQCLQ LAGLHESLAL YPEFAPRFSR ENSP00000257981/1-1083 IGCELPRREQ VVKANADVKG LTYCVLQCLQ LAGLHDSLAL YPEFAPRFSR ENSBTAP00000025668/1-1074 IGCELPRREQ VVKANADVKG LTYCVLQCLQ LAGLHESLAL YPEFAPRFSR bmy_05777T0/1-1056 IGCELPGREQ VVKANADVKG LTYCVLQCLQ LAGLHESLAL YPEFAPRFSR BACU008000/1-1085 IGCELPRREQ VVKANADVKG LTYCVLQCLQ LAGLHESLAL YPEFAPRFSR 701 750 ENSTTRP00000000047/1-1082 GLRGELSYNL GAGGGPAEVD TSSLSGDNTL MSTLEEKETD GEQGPTASPA ENSP00000257981/1-1083 GLRGELSYNL GAGGGSAEVD TSSLSGDNTL MSTLEEKETD GEQGPTVSPA ENSBTAP00000025668/1-1074 GLRGELSYNL GAGGGPAEAD TSSLSGDNTL MSTLEEKETD GEQGPAASPA bmy_05777T0/1-1056 GLRGELSYNL GACGGPAEAD TSSLSGDNTL MSTLEEKETD GEQGPAASPA BACU008000/1-1085 GLRGELSYNL GAGGGPAEVD TSSLSGDNTL MSTLEEKETD GEQGPAASPA 751 800 ENSTTRP00000000047/1-1082 PADEPSSPLL SPSCTSSSSA AKLLSPRRPA PRHPLGGRGR PGRAGALQAE ENSP00000257981/1-1083 PADEPSSPLL SPGCTSSSSA AKLLSPRRTA PRPRLGGRGR PGRAGALKAE ENSBTAP00000025668/1-1074 PADEPSSPLL SPGCTSSSSA AKLLSPRRTV PRSRLGGRGR PGRAGALQAE bmy_05777T0/1-1056 PADEPSSPLL SPSCTSSSSA AKLLSPRRTA PRPPLGGRGR PGRAGALQAE BACU008000/1-1085 PADEPSSPLL SPSCTSSSSA AKLLSPRRTA PRPPLGGRGR PGRAGTLQAE 801 850 ENSTTRP00000000047/1-1082 AGPSAHPQSL EGLRLPSVPW NVPPDLSPRV VDGIEDGCGS DQPKFSFRVR ENSP00000257981/1-1083 AGPSAPPRAL EGLRLPPMPW NVPPDLSPRV VDGIEDGCGS DQPKFSFRVG ENSBTAP00000025668/1-1074 AGPSTHPRSL EGLRLPPVPW NVPPDLSPRV VDGIEDGCGS DQPQFSFRVR bmy_05777T0/1-1056 AGPSAHSRNL EGLRLPSVPW NVPPDLSPRV VDGIEDGCGS DQPKFSFRVR BACU008000/1-1085 AGPSAHPRSL EGLQLPSVPW NVPPDLSPRV VDGIEDGCGS DQPKFSFRVR 851 900 ENSTTRP00000000047/1-1082 RSGPECSSSP SPGPENSLLT VPLGPSEVRN TDMLDKLRQA VMELSEQVLQ ENSP00000257981/1-1083 QSGPECSSSP SPGPESGLLT VPHGPSEARN TDTLDKLRQA VTELSEQVLQ ENSBTAP00000025668/1-1074 QSGPECSSSP SPGPENGLLT VPLGPSEVRN TDTLDKLRQA VMELSEQVLQ bmy_05777T0/1-1056 RSGPECSSSP SPGPENSLRT VPLGPSEVRN TDMLDKLRQA VMELSEQVQQ BACU008000/1-1085 RSGPECSSSP SPGPENSLRT VPLGPSEVRN TDMLDKLRQA VMELSEQVQQ 901 950 ENSTTRP00000000047/1-1082 MREGLQSLRQ AVQLILAPHG EGPSPRASGE GPCPASASGL LQPLCVDTGT ENSP00000257981/1-1083 MREGLQSLRQ AVQLVLAPHR EGPCPRASGE GPCPASTSGL LQPLCVDTGA ENSBTAP00000025668/1-1074 MREGLQSLRQ AVQLVLAPRG ---------E GPCPAGASGL LQPLCVDTGA bmy_05777T0/1-1056 MREGLQSLRQ AVQLILAPHG EGPCPRASAE GPCPASASGL LQPLCVDTGT BACU008000/1-1085 MREGLQSLRQ AVQLILAPQG EGPCPRASAE GPCPASASGL LQPLCVDTGT 951 1000 ENSTTRP00000000047/1-1082 SSYCLQPPAG SVLSGTRPHP RPGPPPLVAP WPWGPPASQS SPWPQATAFW ENSP00000257981/1-1083 SSYCLQPPAG SVLSGTWPHP RPGPPPLMAP WPWGPPASQS SPWPRATAFW ENSBTAP00000025668/1-1074 SSCCLQPSAG SVLSGTWPHP RPGPPPLMAP WPWGPPASQS SPWPRATAFW bmy_05777T0/1-1056 SSYCLQPPAG SVLSGTRPHP RPGPPPLVAP WPWGPPASQS SPWPQATAFW BACU008000/1-1085 SSYCLQPPAG SVLSGTRPHP RPGPPPLVAP WPWGPPASQS SPWPQATAFW 1001 1050 ENSTTRP00000000047/1-1082 TSTSDSEPPG SGELCPEPST PGPPPP-EEG ARTGPPEPMN QAEAASTGEP ENSP00000257981/1-1083 TSTSDSEPPA SGDLCSEPST PASPPPSEEG ARTGPAEPVS QAEATSTGEP ENSBTAP00000025668/1-1074 TSTSDSEPPG SGELCPEPST PGLPPP-EEG ARTGPPEPMT QAEAASTGEP bmy_05777T0/1-1056 TSTSDTEPPG SGELCPEPST PGPLPP-EEG ARTGPPEPMN QAEAASTGEP BACU008000/1-1085 TSTSDSEPPG SGELCPEPST PGPPPP-EEG ARTGPPEPMN QAEAASTGEP 1051 1100 ENSTTRP00000000047/1-1082 PPGAGGLALP WEPQSLEMVL IGCHGSGTVQ WTQEEGTGV ENSP00000257981/1-1083 PPGSGGLALP WDPHSLEMVL IGCHGSGTVQ WTQEEGTGV ENSBTAP00000025668/1-1074 PPASGGHALP WEPHSLEMVL IGCHGSGTVQ WTQEEGTGV bmy_05777T0/1-1056 PPGSGGLALP WEPHSLEMVL IGCHGSGTVQ WTQEEGTGV BACU008000/1-1085 PPGSGGLALP WEPHSLEMVL IGCHGSGTVQ WTEEEGTGV