KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:26:57 2014 Check: 00 .. Name: ENSP00000257894/1-893 Len: 915 Check: 1765 Weight: 1.00 Name: ENSBTAP00000025675/1-893 Len: 915 Check: 3438 Weight: 1.00 Name: BACU008003/1-589 Len: 915 Check: 5476 Weight: 1.00 Name: ENSTTRP00000000049/1-889 Len: 915 Check: 9647 Weight: 1.00 Name: bmy_05775T0/1-875 Len: 915 Check: 1856 Weight: 1.00 // 1 50 ENSP00000257894/1-893 MEKDDPPQLV TPTSVKAIIL RIEAAQLTRA QEDISTQLSD ILDNVNCVIN ENSBTAP00000025675/1-893 MEKDKPPQLV TPASVKAIIS RIEAAQLTRA QENISSQLSE ILDNVNCVIN BACU008003/1-589 MEKDEPPLLV TPASVKAIIS RIEAAQLTRA QEDISSQLSD ILDNVNCVIN ENSTTRP00000000049/1-889 MEKDEPLLLV TPVSVKAIIS RIEAAQLTRA QEDISSQLSD ILDNVNCVIS bmy_05775T0/1-875 MGKDEPPLLV TPASVKAIIS RIEAAQLTRA QE-------- ---------- 51 100 ENSP00000257894/1-893 RFQEELGYDL KENAKSQQRD PKGKKRFILL EKIASFSKDA MMKEKHLYDI ENSBTAP00000025675/1-893 RFQEELGYDF KKKAKPPQPQ QKGKNRFILL EKISSFSEDA KTKEKNLYEI BACU008003/1-589 RFQEELGYDF KKKAKSHQTE QKGKNRFILL EKITSFANDA KTKEKHLYEI ENSTTRP00000000049/1-889 RFQEELGYDL KKKAKSHQTE QKGKNRFILL EKITSFSNDA KTKEKHLYEI bmy_05775T0/1-875 ---------- ---AKSHQTE QKGKKRFILL EKISSFSNDA KTKEKHLYEI 101 150 ENSP00000257894/1-893 LRWLGDWGDT LTYEIGPRKS EEEAAALDEW IEVTEKVLPL SLIATKRGIE ENSBTAP00000025675/1-893 LHWLGDWGDS LTYEIKNRKS EEEEEALDEW IEVMEKVLPL SLIATKGGIE BACU008003/1-589 LHWLGDWGDS LTYEIRNRKS EEEEEALDER IEVMEKVLPL SLIATKGGIE ENSTTRP00000000049/1-889 LHWLGDWGDS L-YEIRNRKS EEEEEALDEW IEVMEKGLPL SLIATKGGIE bmy_05775T0/1-875 LHWLGDWGDS LTYEIRNRKS EEEEEALDEW IEVMEKVLPL SLIATKGGIE 151 200 ENSP00000257894/1-893 SLTALCSTLI EGQKKRSQVS KRTFWQGWQG RSPQTSPSHP QPLSPEQMLQ ENSBTAP00000025675/1-893 SLISLCSTLI EGQRKGAQMS KHTFWQDWQE QSPQKAISCP QPLSPEQMLQ BACU008003/1-589 SLISLCSTLI EGQRKGAQVS KRTFWQGWRE QSPQKVISCP QPLSPEQMLQ ENSTTRP00000000049/1-889 SLISLCSTLI EGQRKGAQMS KHTFWQGWRE QSPQKVTSCP QPLSPEQMLQ bmy_05775T0/1-875 SLISLCSTLI EGQRKGAQMS KRTFWQGWQE QSPQKVISCP QPLSPEQMLQ 201 250 ENSP00000257894/1-893 DQHTMNTKAS EVTSMLQELL DSTMFSKGEV RAIRYMATVV ENLNKALILQ ENSBTAP00000025675/1-893 DKHTTCVKVS EVKSMLQELL DSTMFNQGEV RAIRYMSAVV ENLNKALILQ BACU008003/1-589 DKHTTCIRVS EVKSMLQELL DSTMFNQGEV RAIRYMSAVV ENLNKALMLQ ENSTTRP00000000049/1-889 DKHTTCIRVS EVKSMLQELL DSTMFNQGEV RAIRYMSAVV ENLNKALMLQ bmy_05775T0/1-875 DKHTTCIRVS EVKFMLQELL DSTMFNQGEV RAIRYMSAVV ENLNKALMLQ 251 300 ENSP00000257894/1-893 HKENRSLETK YRHLQMQATK ELSSQRLHFQ QFMEVLESRR DALLKQVEIL ENSBTAP00000025675/1-893 HKENRSLEAK YRHLKIEMTK ELSNQKLYFQ KSLQVLESKR DALLKQIDIL BACU008003/1-589 HKENRSLEAK YRHLKIEMTK ELSSQRLYFQ KSLQVLKSKR DALLKQVEIL ENSTTRP00000000049/1-889 HKENRSLEAK YRHLKIEMTK ELSSQRLYFQ KSLQVLKSKR DALLKQVEIL bmy_05775T0/1-875 HKENRSLEAK YRHLKIEMTK ELSSQRLYFQ KSLQVLKSKR DALLKQVEIL 301 350 ENSP00000257894/1-893 GGRYHDLLLM KQALEFQLKK AQNATGQAED LAEVSVDSPG PSERETLPRK ENSBTAP00000025675/1-893 GGKYHDLLLI KHALEFQLKK IQSAGGQAED LVRVLVEFPD PDKKEALPKK BACU008003/1-589 GGKYHDLLLM KHALEFQLKK AQSARGQAEY SVKILVDSPA PATKEALPKK ENSTTRP00000000049/1-889 GGKYHDLLLR KRALEFQLNK A-SARGQAEY SVKILVDSPA PAKKEALRKK bmy_05775T0/1-875 GGKYHDLLLM KHALEFQLKK AQSARGQAEY SVKTLVDSPA PATKEALPKK 351 400 ENSP00000257894/1-893 ETVMEESQQE PMKEEQLFSP LPPSPMAMIR DSGAIAAGHQ PLSTMTVRSR ENSBTAP00000025675/1-893 DTVMEETQQE PKKEEQ-FSP CSPSPMAMAW DSGAMPSPDQ PLSTMTVDSR BACU008003/1-589 ETVIEETQQE PKKEEQ-FSP LSPSPLAMAW DSSARPSTCQ PLSTMTVHSR ENSTTRP00000000049/1-889 ETVIEETQQE PKKEEQ-FSP LSPSHLAMTW ESSARPSTCQ PLSTMTVHSR bmy_05775T0/1-875 ETVIEETQQE PKKEEQ-FSP LSPSPLAMAW DSSARPSTCQ PLSTMTMHSR 401 450 ENSP00000257894/1-893 VADVFGSKDT ESLEPVLLPL VDRRFPKKWE RPVAESLGHK DKDQEDYFQ- ENSBTAP00000025675/1-893 IADVYRSKDA ESLQPVLPSS MDHMFPKKWE RLSAESPGDR AKDQ-DFFQE BACU008003/1-589 IADVYRSKDT ENLQPVLPSS MDHKFPKKWE RPSAESPGHK VKDQKDFFQE ENSTTRP00000000049/1-889 TADVYSSKDT ENLQPVLPSS VDHKFPKKWE RPSAESPGHK VKDQKDFFQE bmy_05775T0/1-875 IADVYSSKDT ENLQPVLPSS MDHKFPKKWE RPSAESPGHK VKDQKDFFQE 451 500 ENSP00000257894/1-893 ----KGGLQI KFHCSKQLSL ESSRQVTSES QEEPWEEEFG REMRRQLWLE ENSBTAP00000025675/1-893 VAWEKEGLQI KSHFQKQLSL ERSRKLALES KAEAREEELS WERRRQQWQQ BACU008003/1-589 VTQEKEGLQM KSHFQKQLSS ESSRKVALES KPEHWGEELS WERRRQQWLE ENSTTRP00000000049/1-889 VTQEKEGLQM KSDFQKQLSP ESSRKVALES KAEHWEEELS WERRRQQWL- bmy_05775T0/1-875 VTQEKEGLQM KSHFQKQLSP ESSRKVALES KPEHWEEELS WERRRQQWLE 501 550 ENSP00000257894/1-893 EEEMWQQRQK KWALLEQEHQ EKLRQWNLED LAREQQRRWV QLEKEQESPR ENSBTAP00000025675/1-893 EEEMWLQRQE RWALLEQEHE EKLRQWEAEE AAREQRLR-- -LDQEPRGPW BACU008003/1-589 EEEMWLQWQE KWALLE---R EKRRQWQQGE AA-------- ----EIGPGA ENSTTRP00000000049/1-889 EEEMWLQWQE KWALLER-HR EKQQQWEQGE AARGWQRR-- -LAQEQGGPW bmy_05775T0/1-875 EEEMWLQWRE KWALLE---R EKRRQWQQGE AASGRQQR-- -LDQEHGGPW 551 600 ENSP00000257894/1-893 REPEQLGEDV ERRIFTPTSR WRDLEKAELS LVPAPSRTQS AHQSRRPHLP ENSBTAP00000025675/1-893 REPEQPGEDA ERMIFVPIIR WKDSEDA--S LAPPPSRAQS ARQGRRPCVP BACU008003/1-589 RGPVE-GAGA DRRG------ ---------- ---------R GENGLHAH-- ENSTTRP00000000049/1-889 RGPERTGEDV ERMGFMPTSR WRDLEEA--S LAPPSSQAQS AHQGRRPHLP bmy_05775T0/1-875 RGPEQTGEDV ERMGFMPTSR WRDLEEA--S LAPPPSRAQS AYQGRRPHLP 601 650 ENSP00000257894/1-893 MSPSTQQPAL GKQRPMSSVE FTYRPRTRRV PTKPKKSASF PVTGTSIRRL ENSBTAP00000025675/1-893 RSPKAQQPIP RNQRSMSSAE FTQKPQAHRL PVKPKKSASF PVTGTSPRRV BACU008003/1-589 ------QSME GLGGGITG-- TSPKPGPICS PRQEATLAQA P--------- ENSTTRP00000000049/1-889 RSPKTQQPAP GNQRTMSS-- FTQKPRARCV PTKPKKTASL PVTGTSLREV bmy_05775T0/1-875 RSPKTQQPAP RNQRTMSSAE FTQKPRARCV PTKPKKTASL PVMGTSLRKV 651 700 ENSP00000257894/1-893 TWPSLQISPA NIKKKVYHMD MEAQRKNLQL LSEESELRLP HYLRSKALEL ENSBTAP00000025675/1-893 TQPPVHIAPV TRKEKVYHID VEAQRRNLRL LTEEDTLGLP HYLHGKALEL BACU008003/1-589 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000049/1-889 AQPPLHTSPV TLKGKVYHVD VEAQRKNLQL LTEEDQLGLP HYLRNKVREL bmy_05775T0/1-875 TQPPLHISPV TLKEKVYHVD VEAQRKNLRL LTEEDQLGLP HHLRNKVREL 701 750 ENSP00000257894/1-893 TTTTMELGAL RLQYLCHKYI FYRRLQSLRQ EAINHVQIMK ETEASYKAQN ENSBTAP00000025675/1-893 TTTTMELNAL KLWCLFHKYI CYRHFQSLRQ DVINHIQVVR EAGASYKAQN BACU008003/1-589 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000049/1-889 TTTAVELNAL ELWCLCHEYI LYRHFQSLRQ EVINHVQVVR EAGAAYKAQN bmy_05775T0/1-875 TTTAVEPNAL KLWCLCHKYI LYRHFQSLRQ EVINHVQVVR EAGAAYKDQN 751 800 ENSP00000257894/1-893 LYIFLENIDR LQSLRLQAWT DKQKGLEEKH RECLSSMVTM FPKLQLEWNV ENSBTAP00000025675/1-893 LFLFLENVDH LQKLQLQVWT DKQKDLEEKR RGCLSSMATM FPKLQ-EWNV BACU008003/1-589 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000049/1-889 LYLFLENVDR LQNLQLQAWT DKQRDLEEKR RECLSSMMTM FPKLQQEWNI bmy_05775T0/1-875 LYLFLENIDR LQNLQLQAWT DKQKDLEEKR RECLSSMVTM FPKLQQEWNI 801 850 ENSP00000257894/1-893 HLNIPEVTSP KPKKCKLPAA SPRHIRPSGP TYKQP---FL SRHRACVPLQ ENSBTAP00000025675/1-893 NLHTPVVISP KSRKSKPPPF LLRHIHSSSP FCKRSQELFK TKHQPRVPQQ BACU008003/1-589 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000049/1-889 NLNTPVVTSP KSRKSKPPPS LLRNIHSSSP SCKRHLELFM TKHQQCVPLR bmy_05775T0/1-875 NLNNLVVTSP KSRKSKPPSS LLRHIHSSSP SCKQHLELFM TKHQQCVPLR 851 900 ENSP00000257894/1-893 MARQQGKQME AVWKTEVASS SYAIEKKTPA SLPRDQLRGH PDIPRLLTLD ENSBTAP00000025675/1-893 MARQQGNQME AMWKIDVAAS SYPIEKKTPT SLSWDQLGGF PDIPRLLALD BACU008003/1-589 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000049/1-889 MAHQQGNQLE AIWKTDVASS SHPVEKKTPT SLSWDQL-GY PDIPRLLALD bmy_05775T0/1-875 MAHQQGNQLE AIWKTDVASS SHPVEKKTPT SLSWDQLGGY PDTPRLLALD 901 950 ENSP00000257894/1-893 V--------- ----- ENSBTAP00000025675/1-893 V--------- ----- BACU008003/1-589 ---------- ----- ENSTTRP00000000049/1-889 VH-------- ----- bmy_05775T0/1-875 VHSSYHKSLM SLKAR