KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:04 2014 Check: 00 .. Name: ENSTTRP00000009005/1-540 Len: 540 Check: 7008 Weight: 1.00 Name: ENSP00000263915/1-540 Len: 540 Check: 9382 Weight: 1.00 Name: ENSBTAP00000025686/1-540 Len: 540 Check: 481 Weight: 1.00 Name: bmy_07255T0/1-336 Len: 540 Check: 6799 Weight: 1.00 Name: BACU010083/1-540 Len: 540 Check: 9865 Weight: 1.00 // 1 50 ENSTTRP00000009005/1-540 MTTTLQDGQS AAGRAAARDS PLAAQVCGAA QGRGDARDLV PAPWLHARAL ENSP00000263915/1-540 MTTSLQDGQS AASRAAARDS PLAAQVCGAA QGRGDAHDLA PAPWLHARAL ENSBTAP00000025686/1-540 MTTSLQDGQS AAGRAAARDS PLAAQVCGAA QGRGDARDLA PAPWLHARAL bmy_07255T0/1-336 ---------- ---------- ---------- ---------- ---------- BACU010083/1-540 MTTSRQDGQS AAGRAAARDS PLAAQVCGAA QGRGDARDLV PAPWLHARAL 51 100 ENSTTRP00000009005/1-540 LPPPDGTRGC AADXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263915/1-540 LPLPDGTRGC AADRRKKKDL DVPEMPSIPN PFPELCCSPF TSVLSADLFP ENSBTAP00000025686/1-540 LPPPDATRGC AADRRKKKDL DVLEMPSIPN PFPELCCSPF TSVLSAGLFP bmy_07255T0/1-336 ---------- ---------- ---------- ---------- --MLTGTFFT BACU010083/1-540 LPPPDGTRGC AADRRKKKDL DVLEMPSIPN PFPELCCSPF TSVLSAGLFP 101 150 ENSTTRP00000009005/1-540 XXXXXXXXVI KVYSEDETSR ALEVPSDITA RDVCQLLILK NHYIDDHSWT ENSP00000263915/1-540 KANSRKKQVI KVYSEDETSR ALDVPSDITA RDVCQLLILK NHYIDDHSWT ENSBTAP00000025686/1-540 KANSRKKQVI KVYSEDETSR ALEVPSDITA RDVCQLLILK NHYIDDHSWT bmy_07255T0/1-336 ---------- ---------- ---------- ---------- ---------- BACU010083/1-540 KANSRKKQVI KVYSEDETSR ALEVPSDITA RDVCQLLILK NHYIDDHSWT 151 200 ENSTTRP00000009005/1-540 LFEHLPHIGL ERTIEDHELV IEVLSNWGME EENKLYFRKN YAKYEFFKNP ENSP00000263915/1-540 LFEHLPHIGV ERTIEDHELV IEVLSNWGIE EENKLYFRKN YAKYEFFKNP ENSBTAP00000025686/1-540 LFEHLPHVGL ERTIEDHELV IEVLSNWGME EENKLYFRKN YAKYEFFKNP bmy_07255T0/1-336 ---------- ERTIEDHELV IEVLSNWGME EENKLYFRKN YAKYEFFKNP BACU010083/1-540 LFEHLPHIGL ERTIEDHELV IEVLSNWGME EENKLYFRKN YAKYEFFKNP 201 250 ENSTTRP00000009005/1-540 MXXXXXXXXX XXXXXXXXXX XXXXXXMFLS SSTYPEIHGF LHAKEQGKKS ENSP00000263915/1-540 MYFFPEHMVS FATETNGEIS PTQILQMFLS SSTYPEIHGF LHAKEQGKKS ENSBTAP00000025686/1-540 MYFFPEHMVS FATETNGEIS PTQILQMFLS SSTYPEIHGF LHAKEQGKKS bmy_07255T0/1-336 M--------- ---------- ------IFLS SSTYPEIHGF LHAKEQGKKS BACU010083/1-540 MYFFPEHMVS FATETNGEIS PTQILQIFLS SSTYPEIHGF LHAKEQGKKS 251 300 ENSTTRP00000009005/1-540 WKKIYFLLRR SGLYFSTKGT SKEPRHLQFF SEFGNSDIYV SLAGKKKHGA ENSP00000263915/1-540 WKKIYFFLRR SGLYFSTKGT SKEPRHLQFF SEFGNSDIYV SLAGKKKHGA ENSBTAP00000025686/1-540 WKKIYFLLRR SGLYFSTKGT SKEPRHLQFF SEFGNSDIYV SLAGKKKHGA bmy_07255T0/1-336 WKKIYFLLRR SGLYFSTKGT SKEPRHLQFF SEFGNSDIYV SLAGKKKHGA BACU010083/1-540 WKKIYFLLRR SGLYFSTKGT SKEPRHLQFF SEFGNSDIYV SLAGKKKHGA 301 350 ENSTTRP00000009005/1-540 PTNYGFCFKP NKAGGPRDLK MLCAEEEQSR TCWVTAIRLF KYGMQLYQNY ENSP00000263915/1-540 PTNYGFCFKP NKAGGPRDLK MLCAEEEQSR TCWVTAIRLL KYGMQLYQNY ENSBTAP00000025686/1-540 PTNYGFCFKP NKAGGPRDLK MLCAEEEQSR TCWVTAIRLL KYGMQLYQNY bmy_07255T0/1-336 PTNYGFCFKP NKAGGPRDLK MLCAEEEQSR TCWVTAIRLL K--------- BACU010083/1-540 PTNYGFCFKP NKAGGPRDLK MLCAEEEQSR TCWVTAIRLL KYGMQLYQNY 351 400 ENSTTRP00000009005/1-540 MHPYQGRSGC SSQSISPMRS ISENSLVAMD FSGQKSRVIE NPTEALSVAV ENSP00000263915/1-540 MHPYQGRSGC SSQSISPMRS ISENSLVAMD FSGQKSRVIE NPTEALSVAV ENSBTAP00000025686/1-540 MHPYQGRSGY SSQSISPMRS ISENSLVAMD FSGQKTRVIE NPTEALSVAV bmy_07255T0/1-336 ---------- --------RS ISENSLVAMD FSGQKSRVIE NPTEALSVAV BACU010083/1-540 MHPYQGRSGC SSQSISPMRS ISENSLVAMD FSGQKSRVIE NPTEALSVAV 401 450 ENSTTRP00000009005/1-540 EEGLAWRKKG CLRLGTHGSP TASSQSCATN MAIHRSQPWF HHKISREEAQ ENSP00000263915/1-540 EEGLAWRKKG CLRLGTHGSP TASSQSSATN MAIHRSQPWF HHKISRDEAQ ENSBTAP00000025686/1-540 EEGLAWRKKG CLRLGSHGSP TASSQSSATS MAIHRSQPWF HHKISREEAQ bmy_07255T0/1-336 EEGLAWRKKG CLRLGTHGSP TASSQSCATN MAIHRSQPWF HHKISREEAQ BACU010083/1-540 EEGLAWRKKG CLRLGTHGSP TASSQSCATN MAIHRSQPWF HHKISREEAQ 451 500 ENSTTRP00000009005/1-540 RLIIQQGLVD GVFLVRDSQS NPKTFVLSMS HGQKIKHFQI IPVEDDGEMF ENSP00000263915/1-540 RLIIQQGLVD GVFLVRDSQS NPKTFVLSMS HGQKIKHFQI IPVEDDGEMF ENSBTAP00000025686/1-540 RLIIQQGLVD GVFLVRDSQS NPKTFVLSMS HGQKIKHFQI IPVEDDGEMF bmy_07255T0/1-336 RLIIQQGLVD GVFLVRDSQS NPKTFVLSMS HGQKIKHFQI IPVEDDGEMF BACU010083/1-540 RLIIQQGLVD GVFLVRDSQS NPKTFVLSMS HGQKIKHFQI IPVEDDGEMF 501 550 ENSTTRP00000009005/1-540 HTLDDGHTRF TDLIQLVEFY QLNKGVLPCK LKHYCARIAL ENSP00000263915/1-540 HTLDDGHTRF TDLIQLVEFY QLNKGVLPCK LKHYCARIAL ENSBTAP00000025686/1-540 HTLDDGHTRF TDLIQLVEFY QLNKGVLPCK LKHYCARIAL bmy_07255T0/1-336 HTLDDGHTRF TDLIQLVEFY QLNKGVLPCK LKHYCARIAL BACU010083/1-540 HTLDDGHTRF TDLIQLVEFY QLNKGVLPCK LKHYCARIAL