KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:27:04 2014 Check: 00 ..
Name: ENSTTRP00000009005/1-540 Len: 540 Check: 7008 Weight: 1.00
Name: ENSP00000263915/1-540 Len: 540 Check: 9382 Weight: 1.00
Name: ENSBTAP00000025686/1-540 Len: 540 Check: 481 Weight: 1.00
Name: bmy_07255T0/1-336 Len: 540 Check: 6799 Weight: 1.00
Name: BACU010083/1-540 Len: 540 Check: 9865 Weight: 1.00
//
1 50
ENSTTRP00000009005/1-540 MTTTLQDGQS AAGRAAARDS PLAAQVCGAA QGRGDARDLV PAPWLHARAL
ENSP00000263915/1-540 MTTSLQDGQS AASRAAARDS PLAAQVCGAA QGRGDAHDLA PAPWLHARAL
ENSBTAP00000025686/1-540 MTTSLQDGQS AAGRAAARDS PLAAQVCGAA QGRGDARDLA PAPWLHARAL
bmy_07255T0/1-336 ---------- ---------- ---------- ---------- ----------
BACU010083/1-540 MTTSRQDGQS AAGRAAARDS PLAAQVCGAA QGRGDARDLV PAPWLHARAL
51 100
ENSTTRP00000009005/1-540 LPPPDGTRGC AADXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000263915/1-540 LPLPDGTRGC AADRRKKKDL DVPEMPSIPN PFPELCCSPF TSVLSADLFP
ENSBTAP00000025686/1-540 LPPPDATRGC AADRRKKKDL DVLEMPSIPN PFPELCCSPF TSVLSAGLFP
bmy_07255T0/1-336 ---------- ---------- ---------- ---------- --MLTGTFFT
BACU010083/1-540 LPPPDGTRGC AADRRKKKDL DVLEMPSIPN PFPELCCSPF TSVLSAGLFP
101 150
ENSTTRP00000009005/1-540 XXXXXXXXVI KVYSEDETSR ALEVPSDITA RDVCQLLILK NHYIDDHSWT
ENSP00000263915/1-540 KANSRKKQVI KVYSEDETSR ALDVPSDITA RDVCQLLILK NHYIDDHSWT
ENSBTAP00000025686/1-540 KANSRKKQVI KVYSEDETSR ALEVPSDITA RDVCQLLILK NHYIDDHSWT
bmy_07255T0/1-336 ---------- ---------- ---------- ---------- ----------
BACU010083/1-540 KANSRKKQVI KVYSEDETSR ALEVPSDITA RDVCQLLILK NHYIDDHSWT
151 200
ENSTTRP00000009005/1-540 LFEHLPHIGL ERTIEDHELV IEVLSNWGME EENKLYFRKN YAKYEFFKNP
ENSP00000263915/1-540 LFEHLPHIGV ERTIEDHELV IEVLSNWGIE EENKLYFRKN YAKYEFFKNP
ENSBTAP00000025686/1-540 LFEHLPHVGL ERTIEDHELV IEVLSNWGME EENKLYFRKN YAKYEFFKNP
bmy_07255T0/1-336 ---------- ERTIEDHELV IEVLSNWGME EENKLYFRKN YAKYEFFKNP
BACU010083/1-540 LFEHLPHIGL ERTIEDHELV IEVLSNWGME EENKLYFRKN YAKYEFFKNP
201 250
ENSTTRP00000009005/1-540 MXXXXXXXXX XXXXXXXXXX XXXXXXMFLS SSTYPEIHGF LHAKEQGKKS
ENSP00000263915/1-540 MYFFPEHMVS FATETNGEIS PTQILQMFLS SSTYPEIHGF LHAKEQGKKS
ENSBTAP00000025686/1-540 MYFFPEHMVS FATETNGEIS PTQILQMFLS SSTYPEIHGF LHAKEQGKKS
bmy_07255T0/1-336 M--------- ---------- ------IFLS SSTYPEIHGF LHAKEQGKKS
BACU010083/1-540 MYFFPEHMVS FATETNGEIS PTQILQIFLS SSTYPEIHGF LHAKEQGKKS
251 300
ENSTTRP00000009005/1-540 WKKIYFLLRR SGLYFSTKGT SKEPRHLQFF SEFGNSDIYV SLAGKKKHGA
ENSP00000263915/1-540 WKKIYFFLRR SGLYFSTKGT SKEPRHLQFF SEFGNSDIYV SLAGKKKHGA
ENSBTAP00000025686/1-540 WKKIYFLLRR SGLYFSTKGT SKEPRHLQFF SEFGNSDIYV SLAGKKKHGA
bmy_07255T0/1-336 WKKIYFLLRR SGLYFSTKGT SKEPRHLQFF SEFGNSDIYV SLAGKKKHGA
BACU010083/1-540 WKKIYFLLRR SGLYFSTKGT SKEPRHLQFF SEFGNSDIYV SLAGKKKHGA
301 350
ENSTTRP00000009005/1-540 PTNYGFCFKP NKAGGPRDLK MLCAEEEQSR TCWVTAIRLF KYGMQLYQNY
ENSP00000263915/1-540 PTNYGFCFKP NKAGGPRDLK MLCAEEEQSR TCWVTAIRLL KYGMQLYQNY
ENSBTAP00000025686/1-540 PTNYGFCFKP NKAGGPRDLK MLCAEEEQSR TCWVTAIRLL KYGMQLYQNY
bmy_07255T0/1-336 PTNYGFCFKP NKAGGPRDLK MLCAEEEQSR TCWVTAIRLL K---------
BACU010083/1-540 PTNYGFCFKP NKAGGPRDLK MLCAEEEQSR TCWVTAIRLL KYGMQLYQNY
351 400
ENSTTRP00000009005/1-540 MHPYQGRSGC SSQSISPMRS ISENSLVAMD FSGQKSRVIE NPTEALSVAV
ENSP00000263915/1-540 MHPYQGRSGC SSQSISPMRS ISENSLVAMD FSGQKSRVIE NPTEALSVAV
ENSBTAP00000025686/1-540 MHPYQGRSGY SSQSISPMRS ISENSLVAMD FSGQKTRVIE NPTEALSVAV
bmy_07255T0/1-336 ---------- --------RS ISENSLVAMD FSGQKSRVIE NPTEALSVAV
BACU010083/1-540 MHPYQGRSGC SSQSISPMRS ISENSLVAMD FSGQKSRVIE NPTEALSVAV
401 450
ENSTTRP00000009005/1-540 EEGLAWRKKG CLRLGTHGSP TASSQSCATN MAIHRSQPWF HHKISREEAQ
ENSP00000263915/1-540 EEGLAWRKKG CLRLGTHGSP TASSQSSATN MAIHRSQPWF HHKISRDEAQ
ENSBTAP00000025686/1-540 EEGLAWRKKG CLRLGSHGSP TASSQSSATS MAIHRSQPWF HHKISREEAQ
bmy_07255T0/1-336 EEGLAWRKKG CLRLGTHGSP TASSQSCATN MAIHRSQPWF HHKISREEAQ
BACU010083/1-540 EEGLAWRKKG CLRLGTHGSP TASSQSCATN MAIHRSQPWF HHKISREEAQ
451 500
ENSTTRP00000009005/1-540 RLIIQQGLVD GVFLVRDSQS NPKTFVLSMS HGQKIKHFQI IPVEDDGEMF
ENSP00000263915/1-540 RLIIQQGLVD GVFLVRDSQS NPKTFVLSMS HGQKIKHFQI IPVEDDGEMF
ENSBTAP00000025686/1-540 RLIIQQGLVD GVFLVRDSQS NPKTFVLSMS HGQKIKHFQI IPVEDDGEMF
bmy_07255T0/1-336 RLIIQQGLVD GVFLVRDSQS NPKTFVLSMS HGQKIKHFQI IPVEDDGEMF
BACU010083/1-540 RLIIQQGLVD GVFLVRDSQS NPKTFVLSMS HGQKIKHFQI IPVEDDGEMF
501 550
ENSTTRP00000009005/1-540 HTLDDGHTRF TDLIQLVEFY QLNKGVLPCK LKHYCARIAL
ENSP00000263915/1-540 HTLDDGHTRF TDLIQLVEFY QLNKGVLPCK LKHYCARIAL
ENSBTAP00000025686/1-540 HTLDDGHTRF TDLIQLVEFY QLNKGVLPCK LKHYCARIAL
bmy_07255T0/1-336 HTLDDGHTRF TDLIQLVEFY QLNKGVLPCK LKHYCARIAL
BACU010083/1-540 HTLDDGHTRF TDLIQLVEFY QLNKGVLPCK LKHYCARIAL