KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:06 2014 Check: 00 .. Name: ENSP00000287675/1-368 Len: 368 Check: 7261 Weight: 1.00 Name: ENSBTAP00000025704/1-368 Len: 368 Check: 4498 Weight: 1.00 Name: bmy_20312T0/1-231 Len: 368 Check: 5998 Weight: 1.00 Name: BACU014619/1-340 Len: 368 Check: 3094 Weight: 1.00 Name: ENSTTRP00000005130/1-368 Len: 368 Check: 2890 Weight: 1.00 // 1 50 ENSP00000287675/1-368 MAIKSIASRL RGSRRFLSGF VAGAVVGAAG AGLAALQFFR SQGAEGALTG ENSBTAP00000025704/1-368 MAAKSFASRL RGSRRFLSGF VAGAVAGAAS TGLVVVQFLW SRDAEPAVVV bmy_20312T0/1-231 MAAKTFASRL RGSRRFLSGF VAGAVAGAMG TGLTVVQFLR SRDAEPALAV BACU014619/1-340 ---------- ---------- --------MG TGLTVVQFLR SRDAEPALAV ENSTTRP00000005130/1-368 MVVTAFASRF RGSRRFLSGF VAGAVAGAVG TGLTVVQFLR SQDAEPALAV 51 100 ENSP00000287675/1-368 KQPDGSAEKA VLEQFGFPLT GTEARCYTNH ALSYDQAKRV PRWVLEHISK ENSBTAP00000025704/1-368 REPDGSSEKA VLEQFGFPLA GTETRCYTNH ALSYDQSKRV PRWVLEHISK bmy_20312T0/1-231 REPDGSSERA LLEQFGFPLT GTETKCYTNH ALSYDQSKRV PRWVLEHISK BACU014619/1-340 REPDGSSERA LLEQFGFPLT GTETRCYTNH ALSYDQSKRV PRWVLEHISK ENSTTRP00000005130/1-368 REPDGSSERA LLEQFGFPLT GTETRCYTNH ALSYDQSKRV PRWVLEHISK 101 150 ENSP00000287675/1-368 SKIMGDADRK HCKFKPDPNI PPTFSAFNED YVGSGWSRGH MAPAGNNKFS ENSBTAP00000025704/1-368 SKITGAADRK HCKFKPDPNI PPAFSAFNED YIGSGWSRGH MAPAGNNKFS bmy_20312T0/1-231 SKITGDADRK HCKFKPDPNI PPTFSAFNED YVGSGWSRGH MAPAGDNKFS BACU014619/1-340 SKITGDAERK HCKFKPDPNI PPTFSAFNED YVGSGWSRGH MAPAGDNKFS ENSTTRP00000005130/1-368 SKITGDADRK HCKFKPDPNI PPTFSAFNED YVGSGWSRGH MAPAGDNKFS 151 200 ENSP00000287675/1-368 SKAMAETFYL SNIVPQDFDN NSGYWNRIEM YCRELTERFE DVWVVSGPLT ENSBTAP00000025704/1-368 TKAMAETFYL SNIVPQNFDN NAGYWNRIEM YCRELTERFE DVWIVSGPLT bmy_20312T0/1-231 SKAMAETFYL SNIVPQNFDN NAGYWNRIEM YCRELTERFE DVWIVSGPLT BACU014619/1-340 SKAMAETFYL SNIVPQNFDN NAGYWNRIEM YCRELTERFE DVWIVSGPLT ENSTTRP00000005130/1-368 SKAMAETFYL SNIVPQNFDN NAGYWNRMEM YCRELTERFE DVWVVSGPLT 201 250 ENSP00000287675/1-368 LPQTRGDGKK IVSYQVIGED NVAVPSHLYK VILARRSSVS TEPLALGAFV ENSBTAP00000025704/1-368 LPQTGSDGKK TVSYQVIGED NVAVPSHLYK VILARRSAGS AEPLALGAFV bmy_20312T0/1-231 LPQTGSNGRK TVSYQ----- ---------- ---------- ---------- BACU014619/1-340 LPQTGSNGRK TVSYQVIGED NVAVPSHLYK VILARRSPRS AEPLALGAFV ENSTTRP00000005130/1-368 LPQTGSNGRK TVSYQVIGED NVAVPSHLYK VILARRNPRS AEPLALGAFV 251 300 ENSP00000287675/1-368 VPNEAIGFQP QLTEFQVSLQ DLEKLSGLVF FPHLDRTSDI RNICSVDTCK ENSBTAP00000025704/1-368 VPNKAIGFQP QLSEFQVSLQ DLEKLSGLVF FPHLDRTSDI RNICSVDTCK bmy_20312T0/1-231 ---------- ---------- ---------- ---------- -----VGTC- BACU014619/1-340 VPNKAIGFQP QLSEFQVSLQ ELEKLSGLVF FPHLDRTRDI KNICSVDTCK ENSTTRP00000005130/1-368 VPNKAIGFQP QLSEFQVSLQ ELEKLSGLVF FPHLDRTSDI KNICSVDTCK 301 350 ENSP00000287675/1-368 LLDFQEFTLY LSTRKIEGAR SVLRLEKIME NLKNAEIEPD DYFMSRYEKK ENSBTAP00000025704/1-368 LLDFREFTLY LSTRKVEGAR SVVRLEKVLE NLRNAGIEPD EYFMTRYEKK bmy_20312T0/1-231 -FNIQAYVIC M--------- ---RL----- ---------- ---------- BACU014619/1-340 LLDFREFTLY LSTRKIEGAR SVRRLEKVME NLQNAGIEPD EEFMTRYEKK ENSTTRP00000005130/1-368 LLDFREFTLY LSTRKIEGAR SVLRLEKVME NLQNAGIEPD EEFMTRYKKK 351 400 ENSP00000287675/1-368 LEELKAKEQS GTQIRKPS ENSBTAP00000025704/1-368 LEELRAQERS GVLEEKPS bmy_20312T0/1-231 ---------- -------- BACU014619/1-340 LEELKAQEQS GVLEGKSS ENSTTRP00000005130/1-368 LEELKAQEQS GVLERKSS