KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:07 2014 Check: 00 .. Name: ENSTTRP00000012383/1-546 Len: 738 Check: 8750 Weight: 1.00 Name: bmy_12845T0/1-512 Len: 738 Check: 5196 Weight: 1.00 Name: ENSP00000328720/1-733 Len: 738 Check: 5447 Weight: 1.00 Name: BACU020037/1-538 Len: 738 Check: 8743 Weight: 1.00 Name: ENSBTAP00000025710/1-707 Len: 738 Check: 884 Weight: 1.00 // 1 50 ENSTTRP00000012383/1-546 ---------- ---------- ---------- ---------- ---------- bmy_12845T0/1-512 ---------- MGFIEVCAAV CTNARSPGRA CWALWASAVP ---------- ENSP00000328720/1-733 MAEVGEDSGA RALLALRSAP CSPVLCAAAA AAAFPAAAPP PAPAQPQPPP BACU020037/1-538 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025710/1-707 -MACTESLGV AGSVAVQVLP CKPFLFPFSR M--------- ---------P 51 100 ENSTTRP00000012383/1-546 ---------- ---------- ---------- ---------- ---------- bmy_12845T0/1-512 ---------- ---------- ---------- ---------- ---------- ENSP00000328720/1-733 GPPPPPPPPL PPGAIAGAGS SGGSSGVSGD SAVAGAAPAL VAAAAASVRQ BACU020037/1-538 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025710/1-707 SPALTPPPQQ PWISAHRGSE KGPRSHDLVL VPRTTSDPGS KLSSAASSHW 101 150 ENSTTRP00000012383/1-546 ---------- ---------- ---------- ---------- ---------- bmy_12845T0/1-512 ---------- ---------- ---------- ---------- ---------- ENSP00000328720/1-733 SPGPALARLE GREFEFLMRQ PSVTIGRNSS QGSVDLSMGL SSFISRRHLQ BACU020037/1-538 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025710/1-707 SPGPALARLE GREFEFLMRQ PSVTIGRNSS QGSVDLSMGL SSFISRRHLQ 151 200 ENSTTRP00000012383/1-546 ---------- ---------- ---------- -------CT- FRFPSTAIKI bmy_12845T0/1-512 ---------- ---------- ---------- -------CPR RRFPRKGLSA ENSP00000328720/1-733 LSFQEPHFYL RCLGKNGVFV DGAFQRRGAP ALQLPKQCT- FRFPSTAIKI BACU020037/1-538 ---------- ---------- ---------- -------CT- FRFPSTAIKI ENSBTAP00000025710/1-707 LSFQEPHFYL RCLGKNGVFV DGAFQRRGAP ALQLPKQCT- LRFPSTAIKI 201 250 ENSTTRP00000012383/1-546 QFTSLYHQEE APASPLRPLY PQISPLKIHI PEPDLRSLVS PVPSPTGTI- bmy_12845T0/1-512 QACRVV---E SGVEAARPLL PQWIP----- ---------- ---------- ENSP00000328720/1-733 QFTSLYHKEE APASPLRPLY PQISPLKIHI PEPDLRSMVS PVPSPTGTI- BACU020037/1-538 QFTSLYHQEE APASPLRPLY PQISPLKIHI PEPDLRSLVS PVPSPTGTI- ENSBTAP00000025710/1-707 QFTSLYHQEE APASPLRPLY PQISPLKIHI PEPDLRSLVS PIPSPTGTIS 251 300 ENSTTRP00000012383/1-546 SVPNSCPASP RGAGSSSYRF VQNVTSDLQL AAEFAAKAAS EQQADASGGD bmy_12845T0/1-512 ---------- ---------- ---------- ----GAQAQK SLSVVCTGQG ENSP00000328720/1-733 SVPNSCPASP RGAGSSSYRF VQNVTSDLQL AAEFAAKAAS EQQADTSGGD BACU020037/1-538 SVPNSCPASP RGAGSSGYRF VQNVTSDLQL AAEFAAKAAS EQQADASGGD ENSBTAP00000025710/1-707 SVPNSCPASP RGAGSSSYRS VQNVTSDLQL AAEFAARAAS EQQADTSGGD 301 350 ENSTTRP00000012383/1-546 SP---KDESK PPYSYAQLIV QAISSAQDRQ LTLSGIYAHI TKHYPYYRTA bmy_12845T0/1-512 APWVTEDESK PPYSYAQLIV QAISSAQDRQ LTLSGIYAHI TKHYPYYRTA ENSP00000328720/1-733 SP---KDESK PPFSYAQLIV QAISSAQDRQ LTLSGIYAHI TKHYPYYRTA BACU020037/1-538 SP---KDESK PPYSYAQLIV QAISSAQDRQ LTLSGIYAHI TKHYPYYRTA ENSBTAP00000025710/1-707 SP---KDESK PPYSYAQLIV QAISSAQDRQ LTLSGIYAHI TKHYPYYRTA 351 400 ENSTTRP00000012383/1-546 DKGWQNSIRH NLSLNRYFIK VPRSQEEPGK GSFWRIDPAS EAKLVEQAFR bmy_12845T0/1-512 DKGWQNSIRH NLSLNRYFIK VPRSQEEPGK GSFWRIDPAS EAKLVEQAFR ENSP00000328720/1-733 DKGWQNSIRH NLSLNRYFIK VPRSQEEPGK GSFWRIDPAS EAKLVEQAFR BACU020037/1-538 DKGWQNSIRH NLSLN-XFIK VPRSQEEPGK GSFWRIDPAS EAKLVEQAFR ENSBTAP00000025710/1-707 DKGWQNSIRH NLSLNRYFIK VPRSQEEPGK GSFWRIDPAS EAKLVEQAFR 401 450 ENSTTRP00000012383/1-546 KRRQRGVSCF RTPFGPLSSR SAPASPTHPG LMSPRSSGLQ TPECLSREGS bmy_12845T0/1-512 KRRQRGVSCF RTPFGPLSSR SAPASPTHPG LMSPRSSGLQ TPECLSREGS ENSP00000328720/1-733 KRRQRGVSCF RTPFGPLSSR SAPASPTHPG LMSPRSGGLQ TPECLSREGS BACU020037/1-538 KRRQRGVSCF RTPFGPLSSR SAPASPTHPG LMSPRSSGLQ TPECLSREGS ENSBTAP00000025710/1-707 KRRQRGVSCF RTPFGPLSSR SAPASPTHPG LMSPRSSGLQ TPECLSREGS 451 500 ENSTTRP00000012383/1-546 PIPXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XPPNLVAKPV bmy_12845T0/1-512 PIPHDPDFGA KLASVPEYRY SQSAPGSPVS AQPVIMAVPP RPPNLVAKPV ENSP00000328720/1-733 PIPHDPEFGS KLASVPEYRY SQSAPGSPVS AQPVIMAVPP RPSSLVAKPV BACU020037/1-538 PIPHDPDFGA KLASVPEYRY SQSAPGSPVS AQPVIMAVPP RPPNLVAKPV ENSBTAP00000025710/1-707 PIPHDPDFGA KLTSVPEYRY SQSAPGSPVS AQPVIVAVPP RPPSLVAKPV 501 550 ENSTTRP00000012383/1-546 AYMPASLVTA QQPSGHAIHV VQQAPPVTML RVVTSSASSA NGYILASQAS bmy_12845T0/1-512 AYMPASLVTA QQPSGHAIHV VQQAPPVTML RVVTTSASSA NGYILASQAS ENSP00000328720/1-733 AYMPASIVTS QQPAGHAIHV VQQAPTVTMV RVVTTSANSA NGYILTSQGA BACU020037/1-538 AYMPASLVTA QQPSGHAIHV VQQAPPVTML RVVTTSASSA NGYILASQAS ENSBTAP00000025710/1-707 AYVPASIVTA QQPSGHAIHV VQQAPPVTML RVVTTSASSA NGYILASQAA 551 600 ENSTTRP00000012383/1-546 AGAAHEAAGT AVLDLGSEAR GLEEKPTIAF ATIPAASRVI QTVASQMAPG bmy_12845T0/1-512 AGGAHEAAGT AVLDLGSEAR GLEEKPTIAF ATIPAASRVI QTVASQMAPG ENSP00000328720/1-733 AGGSHDAAGA AVLDLGSEAR GLEEKPTIAF ATIPAAGGVI QTVASQMAPG BACU020037/1-538 AGGAHEAAGT AVLDLGSEAR GLEEKPTIAF ATIPAASRVI QTVASQMAPG ENSBTAP00000025710/1-707 AGGAHEAAGT AVLDLGGEAR GLEEKPTIAL ATIPAASRVI QTVASQMAPG 601 650 ENSTTRP00000012383/1-546 VPGHTVTILQ PATPVTIGQH HLPVRAVTQN GKHTVPTSSL AGSAYALASP bmy_12845T0/1-512 VPGHTVTILQ PATPVTIGQH HLPVRAVTQN GKHTVPTSSL AGSTYALASP ENSP00000328720/1-733 VPGHTVTILQ PATPVTLGQH HLPVRAVTQN GKHAVPTNSL AGNAYALTSP BACU020037/1-538 VPGHTVTILQ PATPVTIGQH HLPVRAVTQN GKHTVPTSSL AGSAYALASP ENSBTAP00000025710/1-707 VPGHTVAILQ PATPVTLGQH HLPVRAVTQN GKHAVPTSSL AGNTYALTSP 651 700 ENSTTRP00000012383/1-546 LQLLAAQASS STPVVVTRVR EVGPEEPAAA AAAAATSTAA TGAXXXXXXX bmy_12845T0/1-512 LQLLAAQASS STPVVVTRVR EVGPEEPA-- -AAAAPSTAA TAP----SAS ENSP00000328720/1-733 LQLLATQASS SAPVVVTRVC EVGPKEPAAA VAATATTTPA TATTASASAS BACU020037/1-538 LQLLAAQASS STPVVVTRVR EVGPEEPA-- -AAAAPSTAA TAP----SAS ENSBTAP00000025710/1-707 LQLLAAQASS STPVVVTRVC EVGPEEP--- -AAATSTAPP TAT----SAS 701 750 ENSTTRP00000012383/1-546 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XQGPGTGE bmy_12845T0/1-512 PPGEPEVKRS RVEEPLGTVT TQAGAIAAAG PQGPGTGE ENSP00000328720/1-733 STGEPEVKRS RVEEPSGAVT TPAGVIAAAG PQGPGTGE BACU020037/1-538 PPGEPEVKRS RVEEPLGTVT TQAGAIAAAG PQGPGTGE ENSBTAP00000025710/1-707 PTGEPEVKRS RVEEPVGTVT AQAGVMAAAG PQGPGTGE