KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:08 2014 Check: 00 .. Name: BACU010683/1-302 Len: 1158 Check: 2453 Weight: 1.00 Name: bmy_07036T0/1-686 Len: 1158 Check: 7173 Weight: 1.00 Name: ENSTTRP00000005485/1-1064 Len: 1158 Check: 9694 Weight: 1.00 Name: ENSP00000334474/1-1067 Len: 1158 Check: 8648 Weight: 1.00 Name: ENSBTAP00000025717/1-1066 Len: 1158 Check: 7270 Weight: 1.00 // 1 50 BACU010683/1-302 MTGLLHSDHT CSQGRHVGRS LCTRAHTRAH THTQPHRVGK PRAGNLRMEP bmy_07036T0/1-686 ---------- ---------- ---------- ---------- -------MEP ENSTTRP00000005485/1-1064 ---------- ---------- ---------- ---------- ---------- ENSP00000334474/1-1067 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025717/1-1066 ---------- ---------- ---------- ---------- ---------- 51 100 BACU010683/1-302 SSLLPPPNMH VCVEMRGGHA CPAPTLDNVH GSRVEPSETA RMNSMDRHIQ bmy_07036T0/1-686 SSLPPPPNTH V--------- -----LDNVH GSRVEPSETA RMNSMDRHIQ ENSTTRP00000005485/1-1064 ---------- ---------- ---------- ---------- -MNSMDRHIQ ENSP00000334474/1-1067 ---------- ---------- ---------- ---------- -MNSMDRHIQ ENSBTAP00000025717/1-1066 ---------- ---------- ---------- ---------- -MNSMDRHIQ 101 150 BACU010683/1-302 QTNDRLQCIK QHLQNPANFH NAATELLDWC GDPRAFQRPF EQSLMGCLTV bmy_07036T0/1-686 QTNDRLQCIK QHLQNPANFH NAATELLDWC GDPRAFQRPF EQSLMGCLTV ENSTTRP00000005485/1-1064 QTNDRLQCIK QHLQNPANFH NAATELLDWC GDPRAFQRPF EQSLMGCLTV ENSP00000334474/1-1067 QTNDRLQCIK QHLQNPANFH NAATELLDWC GDPRAFQRPF EQSLMGCLTV ENSBTAP00000025717/1-1066 QTNDRLQCIK QHLQNPANFH NAATELLDWC GDPRAFQRPF EQSLMGCLTV 151 200 BACU010683/1-302 VSRVAAQQGF DLDLGYRLLA VCAANRDKFT PKSAAF---- ---------- bmy_07036T0/1-686 VSRVAAQQGF DLDLGYRLLA VCAANRDKFT PKSAGG---- ---------- ENSTTRP00000005485/1-1064 VSRVAAQQGF DLDLGYRLLA VCAANRDKFT PKSAALLSSW CEELGRLLLL ENSP00000334474/1-1067 VSRVAAQQGF DLDLGYRLLA VCAANRDKFT PKSAALLSSW CEELGRLLLL ENSBTAP00000025717/1-1066 VSRVAAQQGF DLDLGYRLLA VCAANRDKFT PKSAGRLSSW CEELGRLLLL 201 250 BACU010683/1-302 ---------- ---------- ---------- ---------- ---------- bmy_07036T0/1-686 ---------- ---------- ---------- --SDGSFPYD SVPWQQNTNQ ENSTTRP00000005485/1-1064 RHQKSRQSDP PGKLPMQPPL NSMSSMKPTL SHSDGSFPYD SVPWQQNTNQ ENSP00000334474/1-1067 RHQKSRQSDP PGKLPMQPPL SSMSSMKPTL SHSDGSFPYD SVPWQQNTNQ ENSBTAP00000025717/1-1066 RHQKSRQSDP PGKLPMQPPL NSMSSMKPTL SHSDGSFPYD SVPWQQNTNQ 251 300 BACU010683/1-302 ---SLCARTR EHAHTSTHDS ILL------- ---------- ---------- bmy_07036T0/1-686 PPGSLSVVTT VWGVTNTSQS QVLGNPMANA NNPMNPGGNP MASGMTTSNP ENSTTRP00000005485/1-1064 PPGSLSVVTT VWGVTNTSQS QVLGNPMANA NNPMNPGGNP MASGMTTSNP ENSP00000334474/1-1067 PPGSLSVVTT VWGVTNTSQS QVLGNPMANA NNPMNPGGNP MASGMTTSNP ENSBTAP00000025717/1-1066 PPGSLSVVTT VWGVTNTSQS QVLGNPMANA NNPMNPGGNP MASGMTTSNP 301 350 BACU010683/1-302 ---------- -------VGK VSP------- ---------- ---------- bmy_07036T0/1-686 GLNSPQFAGQ QQQFSAKAGP AQPYIPQSMY GRPNYPGSGG FGASYPGGPN ENSTTRP00000005485/1-1064 GLNSPQFAGQ QQQFSAKAGP AQPYIPQSMY GRPNYPGSGG FGASYPGGPN ENSP00000334474/1-1067 GLNSPQFAGQ QQQFSAKAGP AQPYIQQSMY GRPNYPGSGG FGASYPGGPN ENSBTAP00000025717/1-1066 GLNSPQFAGQ QQQFSAKAGP TQPYIQQSMY GRPNYPGSGG FGASYPGGPN 351 400 BACU010683/1-302 ---------- ---------- ---------- ---------- ---------- bmy_07036T0/1-686 APAGMGIPPH TRPPADFTQP AAAAAAAAVA AAAATATATA TATVAALQET ENSTTRP00000005485/1-1064 APAGMGIPPH TRPPADFTQP AAAAAAAAVA AAAATATATA TATVAALQET ENSP00000334474/1-1067 APAGMGIPPH TRPPADFTQP AAAAAAAAVA AAAATATATA TATVAALQET ENSBTAP00000025717/1-1066 APAGMGVPPH TRPPADFTQP AAAAAAAAVA AAAATATATA TATVAALQET 401 450 BACU010683/1-302 ---------- ---------- ---------- ---------- ---------- bmy_07036T0/1-686 QNKDINQYGP ---------- ---------- ---------- --KDGVGCEE ENSTTRP00000005485/1-1064 QNKDINQYGP MGPTQAYNSQ FMNQPGPRGP ASMGGSMNPA SMAAGMTPSG ENSP00000334474/1-1067 QNKDINQYGP MGPTQAYNSQ FMNQPGPRGP ASMGGSMNPA SMAAGMTPSG ENSBTAP00000025717/1-1066 QNKDINQYGP MGPTQAYNSQ FMNQPGPRGP ASMGGSMNPA SMAAGMTPSG 451 500 BACU010683/1-302 ---------- RRCTASGAMQ GHGV------ ---------- ---------- bmy_07036T0/1-686 RGSPPAEMQD RRGGGKSRMG TAGQ------ ---------- ---------- ENSTTRP00000005485/1-1064 MSGPPMGMNQ PRPPGISPFG THGQRMPQQT YPGPRPQSLP IQSIKRPYPG ENSP00000334474/1-1067 MSGPPMGMNQ PRPPGISPFG THGQRMPQQT YPGPRPQSLP IQNIKRPYPG ENSBTAP00000025717/1-1066 MSGPPMGMNQ PRPPGISPFG THGQRMPQQT YPGPRPQSLP IQSIKRPYPG 501 550 BACU010683/1-302 ---------- ---------- ---------- ---------- ---------- bmy_07036T0/1-686 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005485/1-1064 EPNYGNQQYG PNSQFPTQPG QYPTPNPPRP LTSPSYPGQR MPSQPSTGQY ENSP00000334474/1-1067 EPNYGNQQYG PNSQFPTQPG QYPAPNPPRP LTSPNYPGQR MPSQPSSGQY ENSBTAP00000025717/1-1066 EPNYGNQQYG PNSQFPTQPG QYPTPNPPRP LTSPNYPGQR MPSQPSTGQY 551 600 BACU010683/1-302 ---------- ---------- ---------- ---------- ---------- bmy_07036T0/1-686 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005485/1-1064 PPPTVNMGQY YKPEQFNGQN NTFSGSSYSS YSQGNVNRPP RPVPVANYPH ENSP00000334474/1-1067 PPPTVNMGQY YKPEQFNGQN NTFSGSSYSN YSQGNVNRPP RPVPVANYPH ENSBTAP00000025717/1-1066 PPPTVNMGQY YKPEQFNGQN NTFSGSSYSN YSQGNVNRPP RPVPVANYPH 601 650 BACU010683/1-302 ---------- ---------- ---------- ---------- ---------- bmy_07036T0/1-686 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005485/1-1064 SPVPGNPTPP MTPGSSIPPY LSPSQDVKPP FPPDIKPNMS ALPPPPANHN ENSP00000334474/1-1067 SPVPGNPTPP MTPGSSIPPY LSPSQDVKPP FPPDIKPNMS ALPPPPANHN ENSBTAP00000025717/1-1066 SPVPGNPTPP MTPGSSIPPY LSPSQDVKPP FPPDIKPNMS ALPPPPANHN 651 700 BACU010683/1-302 ---------- ---------- ---------- ---------- ---------- bmy_07036T0/1-686 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005485/1-1064 DELRLTFPVR DG-VLEPFRL EHNLAVSNHV FHLRPTVHQT LMWRSDLELQ ENSP00000334474/1-1067 DELRLTFPVR DGVVLEPFRL EHNLAVSNHV FHLRPTVHQT LMWRSDLELQ ENSBTAP00000025717/1-1066 DELRLTFPVR DGVVLEPFRL EHNLAVSNHV FHLRPTVHQT LMWRSDLELQ 701 750 BACU010683/1-302 ---------- ---------- ---------- ---------- ---------- bmy_07036T0/1-686 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005485/1-1064 FKCYHHEDRQ MXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVCQP ENSP00000334474/1-1067 FKCYHHEDRQ MNTNWPASVQ VSVNATPLTI ERGDNKTSHK PLHLKHVCQP ENSBTAP00000025717/1-1066 FKCYHHEDRQ MNTNWPASVQ VSVNATPLTI ERGDNKTSHK PLHLKHVCQP 751 800 BACU010683/1-302 ---------- ---------- ---------- ---------- ---------- bmy_07036T0/1-686 ---------- ---------- ---------- ---------- ------VGTV ENSTTRP00000005485/1-1064 GRNTIQITVT ACCCSHLFVL QLVHRPSVRS VLQGLLKKRL LPAEHCITKI ENSP00000334474/1-1067 GRNTIQITVT ACCCSHLFVL QLVHRPSVRS VLQGLLKKRL LPAEHCITKI ENSBTAP00000025717/1-1066 GRNTIQITVT ACCCSHLFVL QLVHRPSVRS VLQGLLKKRL LPAEHCITKI 801 850 BACU010683/1-302 ---------- ---------- --------IA IQAP------ -------RCC bmy_07036T0/1-686 KRNFSSVAAS SGNTTLNGED GVEQTAIKVS LKCPITFRRI QLPARGHDCK ENSTTRP00000005485/1-1064 KRNFSSVAAS SGNTTLNGED GVEQTAIKVS LKCPITFRRI QLPARGHDCK ENSP00000334474/1-1067 KRNFSSVAAS SGNTTLNGED GVEQTAIKVS LKCPITFRRI QLPARGHDCK ENSBTAP00000025717/1-1066 KRNFSSVAAS SGNTTLNGED GVEQTAIKVS LKCPITFRRI QLPARGHDCK 851 900 BACU010683/1-302 HVAARAL--- ---------- ---------- ---------- ---------- bmy_07036T0/1-686 HVQGPGTKAK PPFS------ ---FSSKTAL LEGLEVDQYM WGILNAIQHS ENSTTRP00000005485/1-1064 HVQCFDLESY LQLNCERGTW RCPVCNKTAL LEGLEVDQYM WGILNAIQHS ENSP00000334474/1-1067 HVQCFDLESY LQLNCERGTW RCPVCNKTAL LEGLEVDQYM WGILNAIQHS ENSBTAP00000025717/1-1066 HVQCFDLESY LQLNCERGTW RCPVCNKTAL LEGLEVDQYM WGILNAIQHS 901 950 BACU010683/1-302 --------PS TVW------- ---------- ---------- ---------- bmy_07036T0/1-686 EFEEVTIDPT CSWRPVPIKS DLHIKDDPDG IPSKRFKTMS PSQMIMPNVM ENSTTRP00000005485/1-1064 EFEEVTIDPT CSWRPVPIKS DLHIKDDPDG IPSKRFKTMS PSQMIMPNVM ENSP00000334474/1-1067 EFEEVTIDPT CSWRPVPIKS DLHIKDDPDG IPSKRFKTMS PSQMIMPNVM ENSBTAP00000025717/1-1066 EFEEVTIDPT CSWRPVPIKS DLHIKDDPDG IPSKRFKTMS PSQMIMPNVM 951 1000 BACU010683/1-302 ---------- -------PKG ASGTEDL--- ---------- ---------- bmy_07036T0/1-686 EMIAALGPGP SPYPLPPPPG GTNSNDYSSQ GNSYQGHGNF DFPHGNPGGT ENSTTRP00000005485/1-1064 EMIAALGPGP SPYPLPPPPG GTNSNDYSSQ GNSYQGHGNF DFPHGNPGGT ENSP00000334474/1-1067 EMIAALGPGP SPYPLPPPPG GTNSNDYSSQ GNNYQGHGNF DFPHGNPGGT ENSBTAP00000025717/1-1066 EMIAALGPGP SPYPLPPPPG STNSNDYSSQ GNNYQGHGNF DFPHGNPGGT 1001 1050 BACU010683/1-302 ---------- ---------- ---------- ---------- ---------- bmy_07036T0/1-686 SMNDFMHGPP QLSHPPDMPN NMAALEKPLS HPMQETMPHA GSSDQPHPSM ENSTTRP00000005485/1-1064 SMNDFMHGPP QLSHPPDMPN NMAALEKPLS HPMQETMPHA GSSDQPHPSM ENSP00000334474/1-1067 SMNDFMHGPP QLSHPPDMPN NMAALEKPLS HPMQETMPHA GSSDQPHPSI ENSBTAP00000025717/1-1066 SMNDFMHGPP QLSHPPDMPN NMATLEKPLS HPMQETMPHA GSSDQPHPSI 1051 1100 BACU010683/1-302 ---------- ---------- ------PKQS PLP------- ---------- bmy_07036T0/1-686 QQGLHVPHPS SQSGPPLHHS GA--PPPSQP PRPPPQAAPG NHPHSDLTFN ENSTTRP00000005485/1-1064 QQGLHVPHPS SQSGPPLHHS GA--PPPSQP PRQPPQAAPG NHPHSDLTFN ENSP00000334474/1-1067 QQGLHVPHPS SQSGPPLHHS GAPPPPPSQP PRQPPQAAPS SHPHSDLTFN ENSBTAP00000025717/1-1066 QQGLHVPHPS SQSGPPLHHS GA-PPPPSQP PRQPPQAAPG NHPHSDLTFN 1101 1150 BACU010683/1-302 ---------- -QGALKMPWP PEKLIKPWAA -------INS AEERAREEDG bmy_07036T0/1-686 PSSALEGQAG AQGASDMPEP SLDLLPELTN PDELLSYLDP PDLPSNSNDD ENSTTRP00000005485/1-1064 PSSALEGQAG AQGASDMPEP SLDLLPELTN PDELLSYLDP PDLPSNSNDD ENSP00000334474/1-1067 PSSALEGQAG AQGASDMPEP SLDLLPELTN PDELLSYLDP PDLPSNSNDD ENSBTAP00000025717/1-1066 PSSALEGQAG AQGASDMPEP SLDLLPELTN PDELLSYLDP PDLPSNSNDD 1151 1200 BACU010683/1-302 ILLVPA-- bmy_07036T0/1-686 LLSLFENN ENSTTRP00000005485/1-1064 LLSLFENN ENSP00000334474/1-1067 LLSLFENN ENSBTAP00000025717/1-1066 LLSLFENN