KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:09 2014 Check: 00 .. Name: ENSP00000277903/1-560 Len: 600 Check: 4714 Weight: 1.00 Name: ENSBTAP00000025732/1-558 Len: 600 Check: 0 Weight: 1.00 Name: ENSTTRP00000011333/1-552 Len: 600 Check: 813 Weight: 1.00 Name: bmy_03046T0/1-551 Len: 600 Check: 5039 Weight: 1.00 Name: BACU019884/1-532 Len: 600 Check: 4428 Weight: 1.00 // 1 50 ENSP00000277903/1-560 MFARMSDLHV LLLMALVGKT ACGFSLMSLL ESLDPDWTPD QYDYSYEDYN ENSBTAP00000025732/1-558 MFARMSDLHV LLLMVLAGKT AFGLSLLSFL TEPDPDWTPD QYEYSQEYNN ENSTTRP00000011333/1-552 MFARMSDLHV LLLMFLAGKT AFGFSLLSLL TDPDPDWTLD HYEYSQEYYD bmy_03046T0/1-551 MILNGLTKII QSEPRLVGVM GEITGAIRRR LSINTYWTLD HYEYSQEYYD BACU019884/1-532 ---------- ---------- ---------- -----DWTLD HYEYSQEYYD 51 100 ENSP00000277903/1-560 QEENTSSTLT HAENPDWYYT EDQA------ ---------- ---------- ENSBTAP00000025732/1-558 QEENASSTTA YSDNPDWYYE ED-------- ---------- ---------- ENSTTRP00000011333/1-552 QEGNASSALG HPENPDWYYA ED-------- ---------- ---------- bmy_03046T0/1-551 QEENASSALA HPENPDWYYA EDGRRWKFNE QTGGFLPAVH CNIDFRPRVL BACU019884/1-532 QEENASSALA HPENPDWYYA ED-------- ---------- ---------- 101 150 ENSP00000277903/1-560 DPCQPNPCEH GGDCLVHGST FTCSCLAPFS GNKCQKVQNT CKDNPCGRGQ ENSBTAP00000025732/1-558 DPCLSNPCTH GGDCLVSGAT FTCRCPDPFS GNRCQNVQNK CKNNPCGRGD ENSTTRP00000011333/1-552 DPCLSNPCAH GGDCLISGAT FTCSCPAPFS GNRCQNVQNK CKNNSCGRGD bmy_03046T0/1-551 DPCLSNPCAH GGDCLISGAT FTCSCPAPFS GNRCQNVQNK CKNNPCGRGD BACU019884/1-532 DPCLSNPCAH GGDCLISGAT FTCSCPAPFS GNRCQNVQNK CKNNPCGRGD 151 200 ENSP00000277903/1-560 CLITQSPPYY RCVCKHPYTG PSCSQVVPVC RPNPCQNGAT CSRHKRRSKF ENSBTAP00000025732/1-558 CLITQSPPYH RCACKHPYRG SDCSRVVPVC RPNPCQNGGT CSRQRRRSKF ENSTTRP00000011333/1-552 CLITQSSPYY RCACKHPYRG EDCSRAVPAC RPNPCQNGGT CSRHRRRSKF bmy_03046T0/1-551 CLITQSSPYY RCACKHPYRG ADCSTVVPAC RPNPCQNGGT CSRHRRRSKF BACU019884/1-532 CLITRSSPYY RCACKHPYRG VDCSTVVPAC RPNPCQNGGT CSRHRRRSKF 201 250 ENSP00000277903/1-560 TCACPDQFKG KFCEIGSDDC YVGDGYSYRG KMNRTVNQHA CLYWNSHLLL ENSBTAP00000025732/1-558 TCACPDQFKG KLCEIGPDDC YVDDGYSYRG RVSKTIHQHT CLYWNSHLLL ENSTTRP00000011333/1-552 TCTCPDQFKG KLCEIGSDDC YVGDGYSYRG KVSKTINQHS CLYWNSHLLL bmy_03046T0/1-551 TCTCPDQFKG RLCEIGSDDC YVGDGYSYRG KVSKTVNQHS CLYWNSHLLL BACU019884/1-532 TCTCPDQFKG RFCEIGSDDC YVGDGYSYRG KVSKTVNQHS CLYWNSHLLL 251 300 ENSP00000277903/1-560 QENYNMFMED AETHGIGEHN FCRNPDADEK PWCFIKVTND KVKWEYCDVS ENSBTAP00000025732/1-558 QEKYNMFMED AEAHGIGEHN FCRNPDGDKK PWCFIKVNNV KVKWEYCDVP ENSTTRP00000011333/1-552 KENYNMFMED AEAHGIGEHN FCRNPDGDKK PWCFFKLNNA KLKWEYCDVP bmy_03046T0/1-551 KENYNTFMED AEAHGIGEHN FCRNPDGDKK PWCFFKVNNA KVKWEYCDVP BACU019884/1-532 KENYNTFMED AEAHGIGEHN FCRNPDGDKK PWCFFKVNNA KVKWEYCDVP 301 350 ENSP00000277903/1-560 ACSAQDVAYP EESPTEPSTK LPGFDSCGKT EIAERKIKRI YGGFKSTAGK ENSBTAP00000025732/1-558 ACSALDVANP EGRPTEPLTK FPEFGSCGRT EIAEKKVKRI FGGFKSTAGK ENSTTRP00000011333/1-552 SCSALDVAHA EPP------N LPEFDSCGRT EIADRTVKRI YGGFKSTAGK bmy_03046T0/1-551 ACSELDVAYP EGSLTEPLTK LPEFDSCGRT EIAERKVKRI YGGFKSTAGK BACU019884/1-532 ACSEL----- EGSLTEPLTK LPEFDSCGRT EIAERKVKRI YGGFKSTAGK 351 400 ENSP00000277903/1-560 HPWQASLQSS LPLTISMPQG HFCGGALIHP CWVLTAAHCT DIKTRHLKVV ENSBTAP00000025732/1-558 HPWQASLQTS LRLTVSTPQG HYCGGALIHP CWVLTAAHCT EIKTKYLKVV ENSTTRP00000011333/1-552 HPWQASLQTS LRLTISMPQG HFCGGTLIHP CWVLTAAHCT DLKAKYLKVV bmy_03046T0/1-551 HPWQASLQTS LRLTVSMPQG HFCGGTLIHP CWVLTAAHCT E--------- BACU019884/1-532 HPWQASLQTS LRLTISMPQG HFCGGTLIHP CWVLTAAHCT DLKAKYLKVV 401 450 ENSP00000277903/1-560 LGDQDLKKEE FHEQSFRVEK IFKYSHYNER DE-------- --I----PHN ENSBTAP00000025732/1-558 LGDQDLTKTE FHEQSFGVQK IFKYSHYIEI DD-------- --I----PYN ENSTTRP00000011333/1-552 LGDQDLKKTE FHEQSFGVEK ILKYSHYDER DD-------- --I----PYN bmy_03046T0/1-551 ---------- ---------- ---------- ED-------- --ITARFPFL BACU019884/1-532 LGDQDLKKTE FHEQSFGVEK IFKYSHYDER DDIPYNDIGK EGITARFPFL 451 500 ENSP00000277903/1-560 DIALLKLKPV DGHCALESKY VKTVCLPDGS FPSGSECHIS GWGVTETGKG ENSBTAP00000025732/1-558 DIALLKLKPV DGHCALESKY VKTVCLPDGP FLSGTECYIS GWGVTETGEG ENSTTRP00000011333/1-552 DIALLKLKPV DGHCALESKY VKTVCLPDGP FPPGTECHIS GWGVTETGDG bmy_03046T0/1-551 YLALLKLKPV DGHCALESKY VKTVCLPDGP FPPGTECHIS GWGVTETGEG BACU019884/1-532 YLALLKLKPV DGQCALESKY VKTVCLPDGP FPPGTECHIS GWGVTETGEG 501 550 ENSP00000277903/1-560 SRQLLDAKVK LIANTLCNSR QLYDHMIDDS MICAGNLQKP GQDTCQGDSG ENSBTAP00000025732/1-558 SRHLLDAKVK LISNTICNSR QLYDHSIDDN MICAGNLQKP GQDSCQGDSG ENSTTRP00000011333/1-552 SHQLLDAKVK LISNTMCNSR QLYDHMIDDS MICAGNLQKP GQDSCQGDSG bmy_03046T0/1-551 SHQLLDAKVK LINNTMCNSR QLYDHMIDDS MICAGNLQKP GQDSCQGDSG BACU019884/1-532 SHQLLDAKVK LISNTVCNSR QLYDHMIDDS MICAGNLQKP GQDSCQGDSG 551 600 ENSP00000277903/1-560 GPLTCEKDGT YYVYGIVSWG LECGKRPGVY TQVTKFLNWI KATIKSESGF ENSBTAP00000025732/1-558 GPLTCEKDGT SYIYGIVSWG LECGKRPGVY TQVTKFLTWI KATMEKEASF ENSTTRP00000011333/1-552 GPLTCEKDGT YYVYGIVSWG LECGKKPGVY TQVTKFLTWI KATMESEASF bmy_03046T0/1-551 GPLTCEKDGT YYVYGIVSWG LECGKKPGVY TQVTKFLTWI KATMQREASF BACU019884/1-532 GPLTCEKDGT YYVYGIVSWG LECGKKPGVY TQVTKFLTWI KATMEREASF