KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:15 2014 Check: 00 .. Name: ENSTTRP00000002901/1-498 Len: 811 Check: 9962 Weight: 1.00 Name: ENSP00000316054/1-716 Len: 811 Check: 3196 Weight: 1.00 Name: ENSBTAP00000025757/1-715 Len: 811 Check: 6871 Weight: 1.00 Name: bmy_10428T0/1-716 Len: 811 Check: 1510 Weight: 1.00 Name: BACU016577/1-736 Len: 811 Check: 2251 Weight: 1.00 // 1 50 ENSTTRP00000002901/1-498 MGETKIIYHL DGLETTYLVK LPLPAERVTL ADFKGVLQRP SYKFFFKSMD ENSP00000316054/1-716 MGETKIIYHL DGQETPYLVK LPLPAERVTL ADFKGVLQRP SYKFFFKSMD ENSBTAP00000025757/1-715 MGETKIIYHL K-EETPYLVK LPLPAERVTL ADFKGVLQRP SDKFFFKSMD bmy_10428T0/1-716 MGETKIIYHL DGQETPYLVK LPLPAERVTL ADFKGVLQRP SYKFFFKSMD BACU016577/1-736 MGETKIIYHL DGQETPYLVK LPLPAERVTL ADFKGVLQRP SYKFFFKSMD 51 100 ENSTTRP00000002901/1-498 DDFGVVKEEI SDDNAKLPCF NGRVVSWLVS AEGSHPEPAP FCADNPSELP ENSP00000316054/1-716 DDFGVVKEEI SDDNAKLPCF NGRVVSWLVS AEGSHPDPAP FCADNPSELP ENSBTAP00000025757/1-715 DDFGVVKEEI SDDNAKLPCF NGRVVSWLVS AEGSHPEPAA FCADSPAELP bmy_10428T0/1-716 DDFGVVKEEI SDDNAKLPCF NGRVVSWLVS AEGSHPEPAP FCADNPSELP BACU016577/1-736 DDFGVVKEEI SDDNAKLPCF NGRVVSWLVS AEGSHPEPAP FCADNPSELP 101 150 ENSTTRP00000002901/1-498 PPMERTGGIG DSRPPSFHPH AGGGSQKHQD -DTETXXXXX XXXXXXXXXX ENSP00000316054/1-716 PPMERTGGIG DSRPPSFHPH AGGGSQENLD NDTETDSLVS AQRERPRRRD ENSBTAP00000025757/1-715 PPMERTGGIG DSRPPSFHPH AGGGSQENLD NDTETDSLVS AQRERPRRRD bmy_10428T0/1-716 PPMERTGGIG DSRPPSFHPH AGGGSQENLD NDTETDSLVS AQRERPRRRD BACU016577/1-736 PPMERTGGIG DSRPPSFHPH AGGGSQENLD NDTETDSLVS AQRERPRRRD 151 200 ENSTTRP00000002901/1-498 XXXXXTRLNG TAKGERRREP GGYDSSSTLM SSELETTSFF DSDEDDSTSR ENSP00000316054/1-716 GPEHATRLNG TAKGERRREP GGYDSSSTLM SSELETTSFF DSDEDDSTSR ENSBTAP00000025757/1-715 GPEHTTRLNG TAKGERRREP GGYDSSSTLM SSELETTSFF DSDEDDSTSR bmy_10428T0/1-716 GPEHTTRLNG TAKGERRREP GGYDSSSTLM SSELETTSFF DSDEDDSTSR BACU016577/1-736 GPEHTTRLNG TAKGERRREP GGYDSSSTLM SSELETTSFF DSDEDDSTSR 201 250 ENSTTRP00000002901/1-498 ---------- ---------- -----FSSST EQSSASRLMR RHKRRRRKQK ENSP00000316054/1-716 ---------- ---------- -----FSSST EQSSASRLMR RHKRRRRKQK ENSBTAP00000025757/1-715 ---------- ---------- -----FSSST EQSSASRLMR RHKRRRRKQK bmy_10428T0/1-716 WGFGFMGTVG QGWAGSVGND CGPHRFSSST EQSSASRLMR RHKRRRRKQK BACU016577/1-736 WGFG------ ---------- -----FMGTV GQSS------ ---------- 251 300 ENSTTRP00000002901/1-498 VSRIERSSSF SSITDSTMSL NIITVTLNME KYNFLGISIV GQSNERGDGG ENSP00000316054/1-716 VSRIERSSSF SSITDSTMSL NIITVTLNME KYNFLGISIV GQSNERGDGG ENSBTAP00000025757/1-715 VSRIERSSSF SSITDSTMSL NIITVTLNME KYNFLGISIV GQSNERGDGG bmy_10428T0/1-716 VSRIER---- ---------- ---VLLLPVE KYNFLGISIV GQSNERGDGG BACU016577/1-736 --------SF SSITDSTMSL NIITVTLNME KYNFLGISIV GQSNERGDGG 301 350 ENSTTRP00000002901/1-498 IYIGSIMKGG AVAADGRIEP GDMLLQVNEI NFENMSNDDA VRVLREIVHK ENSP00000316054/1-716 IYIGSIMKGG AVAADGRIEP GDMLLQVNEI NFENMSNDDA VRVLREIVHK ENSBTAP00000025757/1-715 IYIGSIMKGG AVAADGRIEP GDMLLQVNEI NFENMSNDDA VRVLREIVHK bmy_10428T0/1-716 IYIGSIMKGG AVAADGRIEP GDMLLQVNEI NFENMSNDDA VRVLREIVHK BACU016577/1-736 IYIGSIMKGG AVAADGRIEP GDMLLQVNEI NFENMSNDDA VRVLREIVHK 351 400 ENSTTRP00000002901/1-498 PG-------- ---------- ---------- --------PI TLTVAKCWDP ENSP00000316054/1-716 PG-------- ---------- ---------- --------PI TLTVAKCWDP ENSBTAP00000025757/1-715 PG-------- ---------- ---------- --------PI TLTVAKCWDP bmy_10428T0/1-716 PGYGWHWGGG GSYFWLSGKG LGLASTHPAL TRDTLAFRPI TLTVAKCWDP BACU016577/1-736 PG-------- ---------- ---------- --DTLAFRPI TLTVAKCWDP 401 450 ENSTTRP00000002901/1-498 SPRGCFTLPR SEPIRPIDPA AWVSHTAAMT GTFPAYGMSP SLSTITSTSS ENSP00000316054/1-716 SPRGCFTLPR SEPIRPIDPA AWVSHTAAMT GTFPAYGMSP SLSTITSTSS ENSBTAP00000025757/1-715 SPRGCFTLPR SEPIRPIDPA AWVSHTAAMT GTFPAYGMSP SLSTITSTSS bmy_10428T0/1-716 SPRGCFTLPR SEPIRPIDPA AWVSHTAAMT GTFPAYGMSP SLSTITSTSS BACU016577/1-736 SPRGCFTLPR SEPIRPIDPA AWVSHTAAMT GTFPAYGMSP SLSTITSTSS 451 500 ENSTTRP00000002901/1-498 SITSSIPDTE RLDDFHLSIH SDMAAIVKAM ASPESGLEVR DRMWLKITIP ENSP00000316054/1-716 SITSSIPDTE RLDDFHLSIH SDMAAIVKAM ASPESGLEVR DRMWLKITIP ENSBTAP00000025757/1-715 SITSSIPDTE RLDDFHLSIH SDMAAIVKAM ASPESGLEVR DRMWLKITIP bmy_10428T0/1-716 SITSSIPDTE R--------- ---------- ---------- ---------- BACU016577/1-736 SITSSIPDTE RLDDFHLSIH SDMAAIVKAM ASPESGLEVR DRMWLKITIP 501 550 ENSTTRP00000002901/1-498 NAFIGSDVVD WLYHNVEGFT DRREARKYAS NLLKAGFIRH TVNKITFSEQ ENSP00000316054/1-716 NAFIGSDVVD WLYHNVEGFT DRREARKYAS NLLKAGFIRH TVNKITFSEQ ENSBTAP00000025757/1-715 NAFIGSDVVD WLYHNVEGFT DRREARKYAS NLLKAGFIRH TVNKITFSEQ bmy_10428T0/1-716 -----SDVVD WLYHNVEGFT DRREARKYAS NLLKAGFIRH TVNKITFSEQ BACU016577/1-736 NAFIGSDVVD WLYHNVEGFT DRREARKYAS NLLKAGFIRH TVNKITFSEQ 551 600 ENSTTRP00000002901/1-498 CYYIFGDLCG ---------- ---------- ---------- ---------- ENSP00000316054/1-716 CYYIFGDLCG NMANLSLHDH DGSSGASDQD TLAPLPHPGA APWPMAFPYQ ENSBTAP00000025757/1-715 CYYIFGDLCG NMANLSLHDH DGSSGASDQD TLAPLPHPGA APWPMAFPYQ bmy_10428T0/1-716 CYYIFGDLCG NMANLSLHDH DGSSGASDQD TLAPLPHPGA APWPMAFPYQ BACU016577/1-736 CYYIFGDLCG NMANLSLHDH DGSSGASDQD TLAPLPHPGA APWPMAFPYQ 601 650 ENSTTRP00000002901/1-498 ---------- ---------- ---------- ---------- ---------- ENSP00000316054/1-716 YPPPPHPYNP HPGFPELGYS YGGGSASSQH SEGSRSSGSN RSGSDRRKEK ENSBTAP00000025757/1-715 YPPPPHPYNP HPGFPELGYS YGGGSASSQH SEGSRSSGSN RSGSDRRKEK bmy_10428T0/1-716 YPPPPHPYNP HPGFPELGYS YGGGSASSQH SEGSRSSGSN RSGSDRRKEK BACU016577/1-736 YPPPPHPYNP HPGFPELGYS YGGGSASSQH SEGSRSSGSN RSGSDRRKEK 651 700 ENSTTRP00000002901/1-498 ---------- ---------- ---------- ---------- ---------- ENSP00000316054/1-716 DPKAGDSKSG GSGSESDHTT RSSLRGPRER APSERSGPAA ---------- ENSBTAP00000025757/1-715 DPKAGDSKSG GSGSESDHTT RSSLRGPRER APSERSGPAA ---------- bmy_10428T0/1-716 DPKTGDSKSG GSGSESDHTT RSSLRGARER APSERSGPAA ---------- BACU016577/1-736 DPKTGDSKSG GSGSESDHTT RSSLRGARER APSERSGPAA SEHSHRSRES 701 750 ENSTTRP00000002901/1-498 ---------- ---------- ---------- ---------- ---------- ENSP00000316054/1-716 ---------- ---------- ----SEHSHR SHHSLASSLR SHHTHPSYGP ENSBTAP00000025757/1-715 ---------- ---------- ----SEHSHR SHHSLASSLR SHHTHPSYGP bmy_10428T0/1-716 ---------- ---------- ----SEHSHR SHHSLASSLR SHHTHPSYGP BACU016577/1-736 DQRTRSSLRG ARERAPSERS GPAASEHSHR SHHSLASSLR SHHTHPSYGP 751 800 ENSTTRP00000002901/1-498 ---------- ---------- ---------- ---------- ---------- ENSP00000316054/1-716 PGVPPLYGPP MLMMPPPPAA MGPPGAPPGR DLASVPPELT ASRQSFRMAM ENSBTAP00000025757/1-715 PGVPPLYGPP MLMMPPPPAA MGPPGAPPGR DLASVPPELT ASRQSFRMAM bmy_10428T0/1-716 PGVPPLYGPP MLMMPPPPAA MGPPGAPPGR DLASVPPELT ASRQSFRMAM BACU016577/1-736 PGVPPLYGPP MLMMPPPPAA MGPPGAPPGR DLASVPPELT ASRQSFRMAM 801 850 ENSTTRP00000002901/1-498 ---------- - ENSP00000316054/1-716 GNPSEFFVDV M ENSBTAP00000025757/1-715 GNPSEFFVDV M bmy_10428T0/1-716 GNPSEFFVDV M BACU016577/1-736 GNPSEFFVDV M