KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:27:17 2014  Check: 00 ..

 Name: bmy_11336T0/1-188         Len:    255  Check:  5860  Weight:  1.00
 Name: ENSP00000230321/1-246     Len:    255  Check:  4931  Weight:  1.00
 Name: ENSBTAP00000025763/1-247  Len:    255  Check:  2809  Weight:  1.00
 Name: BACU017996/1-246          Len:    255  Check:  1438  Weight:  1.00
 Name: ENSTTRP00000015528/1-246  Len:    255  Check:  2986  Weight:  1.00

//


                          1                                                   50
bmy_11336T0/1-188         ----MSTTPP ----PYALPL PLLATDEAKL ADPAQTLSLL PGLEVVTGSA 
ENSP00000230321/1-246     MYQVSGQRPS GCDAPYGAP- -------SAA PGPAQTLSLL PGLEVVTGST 
ENSBTAP00000025763/1-247  MSQVSGQHPP HCDAPHGAP- -------SAA PGPAQTPSLL PGLEVVTGSA 
BACU017996/1-246          MSQVSGQRPP HCDAPHGAP- -------SAA PDPAQTLSLL PGLEVVTGST 
ENSTTRP00000015528/1-246  MSQVSGQCPP HCDAPHGAP- -------SAA PGPAQTLSLL PGLEVVTGSA 


                          51                                                 100
bmy_11336T0/1-188         QPAEAALEEG SLEE-AAPSM PQSNGPGASQ ALDSTDLDIP TEAVT----- 
ENSP00000230321/1-246     HPAEAAPEEG SLEE-AATPM PQGNGPGIPQ GLDSTDLDVP TEAVTCQPQG 
ENSBTAP00000025763/1-247  HPAEAALEEG SLEEAAAPPM TQGNDPEAPQ TLDSTDLDVP IEAVTCQPQG 
BACU017996/1-246          QPAEAALEEG SLEE-AAPSM PQSNGLGASQ ALDSTDLDIP TEAVTRQPQG 
ENSTTRP00000015528/1-246  QPAESALEEG SLEE-AAPLM PQSNGPGASQ ALDSTDLDIP TEAVTRQPQG 


                          101                                                150
bmy_11336T0/1-188         -----LSLPP AAGPRPRAIS PA-------- ---------- ---------- 
ENSP00000230321/1-246     NPLGCTPLLP NDSGHPSELG GTRRAGNGAL GGPKAHRKLQ THPSLASQGS 
ENSBTAP00000025763/1-247  NPLDCTPLVA NGSGHPSELG SARRTGNGAL GGPKAHRKLQ THPSLASQGS 
BACU017996/1-246          NPLGCIPLVA NGSGHPSELG GARRTGNGAL GGPKAHRKLQ THPSLASPGS 
ENSTTRP00000015528/1-246  NPLGCTPLVA NGSGHPSELG GTRRTGNGAL GGPKAHRKLQ THPSLASQGS 


                          151                                                200
bmy_11336T0/1-188         ---------- ---------- DCCVHCILSC LFCEFLTLCN IVLDCATCGS 
ENSP00000230321/1-246     KKSKSSSKST TSQIPLQAQE DCCVHCILSC LFCEFLTLCN IVLDCATCGS 
ENSBTAP00000025763/1-247  KKSKGSTKSA ASQIPLQAQE DCCVHCILSC LFCEFLTLCN LVLDCATCGS 
BACU017996/1-246          KKSKGSTKSA ASQIPLQAQE DCCVHCILSC LFCEFLTLCN IVLDCATCGS 
ENSTTRP00000015528/1-246  KKSKGSTKSA ASQIPLQAQE DCCVHCILSC LFCEFLTLCN IVLDCATCGS 


                          201                                                250
bmy_11336T0/1-188         CSSEDSCLCC CCCGSGECAD CDLPCDLDCG ILDACCESAD CLEICMECCG 
ENSP00000230321/1-246     CSSEDSCLCC CCCGSGECAD CDLPCDLDCG ILDACCESAD CLEICMECCG 
ENSBTAP00000025763/1-247  CSSEDSCLCC CCCGSGECAD CDLPCDLDCG ILDACCESAD CLEICMECCG 
BACU017996/1-246          CSSEDSCLCC CCCGSGECAD CDLPCDLDCG ILDACCESAD CLEICMECCG 
ENSTTRP00000015528/1-246  CSSEDSCLCC CCCGSGECAD CDLPCDLDCG ILDACCESAD CLEICMECCG 


                          251                                                300
bmy_11336T0/1-188         LCFSS 
ENSP00000230321/1-246     LCFSS 
ENSBTAP00000025763/1-247  LCFSS 
BACU017996/1-246          LCFSS 
ENSTTRP00000015528/1-246  LCFSS