KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:17 2014 Check: 00 .. Name: ENSTTRP00000006325/1-495 Len: 560 Check: 7386 Weight: 1.00 Name: ENSP00000323927/1-500 Len: 560 Check: 4727 Weight: 1.00 Name: ENSBTAP00000025765/1-500 Len: 560 Check: 9812 Weight: 1.00 Name: bmy_12726T0/1-336 Len: 560 Check: 4220 Weight: 1.00 Name: BACU007001/1-560 Len: 560 Check: 5666 Weight: 1.00 // 1 50 ENSTTRP00000006325/1-495 ------LLVL VLREAARGLS PQPGAGQDAG RGSGAAIQGT TVQGWNRRAR ENSP00000323927/1-500 MRGELWLLVL VLREAARALS PQPGAGHDEG PGSGWAAKGT VR-GWNRRAR ENSBTAP00000025765/1-500 MRAELWLLVL VLREAARALS PQPGAGQDAG RGSGGATQGT TW-GWNRRAR bmy_12726T0/1-336 ---------- ---------- ---MAGQSM- -----ATAGM DLAG------ BACU007001/1-560 MRAELWLLVL VLREAARGLS PQPGAGQDAG RDSGGAVQGT TMQGWNRRAR 51 100 ENSTTRP00000006325/1-495 EIPGQVSEPD RTQLSQDLGG GTLAIDTLPD NGTRVVXXXX XXXXXXXXXX ENSP00000323927/1-500 ESPGHVSEPD RTQLSQDLGG GTLAMDTLPD NRTRVVEDNH SYYVSRLYGP ENSBTAP00000025765/1-500 ESPGPVSELD RTQLSQDLGG GTLAIDKLPD NGTRVVEDNH SYYVSRLYGP bmy_12726T0/1-336 ---------- ----ARAVGG ---------- -VAREQEDNH SYYVSRLYGP BACU007001/1-560 EIPGQVSEPD RTQLSQDLGG GTLAIDTLPD NGTRVVEDNH SYYVSRVYGP 101 150 ENSTTRP00000006325/1-495 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000323927/1-500 SEPHSRELWV DVAEANRSQV KIHTILSNTH RQASRVVLSF DFPFYGHPLR ENSBTAP00000025765/1-500 SEPRSQELWV DVAKANQSQV KVHRILSNTH RQASRVVLSF DFPFYGHPLR bmy_12726T0/1-336 SEPRSRELWV DVAKANQSQV KVHRILSNTH RQASRVVLSF DFPFYGHPLR BACU007001/1-560 SEPRSRELWV DVAKANQSQV KVHRILSNTH RQASRVVLSF DFPFYGHPLR 151 200 ENSTTRP00000006325/1-495 QITIATGGFI FMGDVVHRML TATQYVAPLM ANFNPGRSDN STVAYFDN-- ENSP00000323927/1-500 QITIATGGFI FMGDVIHRML TATQYVAPLM ANFNPGYSDN STVVYFDN-- ENSBTAP00000025765/1-500 QITIATGGFI FMGDVVHRML TATQYVAPLM ANFNPGYSDN STVAYFDN-- bmy_12726T0/1-336 QITIATGGFI FMGDVVHRML TATQYVAPLM ANFNPGCSDN STVAYFDN-- BACU007001/1-560 QITIATGGFI FMGDVVHRML TATQYVAPLM ANFNPGCSDN STVAYFDNAW 201 250 ENSTTRP00000006325/1-495 ---------- ---------- ---------- ---------- ---------- ENSP00000323927/1-500 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025765/1-500 ---------- ---------- ---------- ---------- ---------- bmy_12726T0/1-336 ---------- ---------- ---------- ---------- ---------- BACU007001/1-560 KSDCLWAAQL LPPVKFANCP IIPKEAKLWP IHIGHRFRRA LLPSLSPCPA 251 300 ENSTTRP00000006325/1-495 -------GTV FVVQWDHVYL QDREDRGSFT FQAALHQDGR IVFGYKEIPM ENSP00000323927/1-500 -------GTV FVVQWDHVYL QGWEDKGSFT FQAALHHDGR IVFAYKEIPM ENSBTAP00000025765/1-500 -------GTV FVVQWDHVYL QGREDRGSFT FQAALHQDGR IVFGYKEIPI bmy_12726T0/1-336 ---------- ---------- ---------- ---------- ---------- BACU007001/1-560 RSLLSSPGTV FVVQWDHVYL QDREDRGSFT FQAALHQDGR IVFGYKEIPV 301 350 ENSTTRP00000006325/1-495 PVLEISSSQH PVKAGLSDAF MILNPSPDVP ESRRRTIFEY HRVELDPSKV ENSP00000323927/1-500 SVPEISSSQH PVKTGLSDAF MILNPSPDVP ESRRRSIFEY HRIELDPSKV ENSBTAP00000025765/1-500 PVLEISSSQH PVKAGLSDAF MILNPSPDVP ESRRRTIFEY HRVELDPSKV bmy_12726T0/1-336 ---------- ---------- ---------- ---------- ---------- BACU007001/1-560 PVLEISSAQH PVKAGLSDAF MILNPSPDVP ESRRRTIFEY HRVELDPSKV 351 400 ENSTTRP00000006325/1-495 TSTSAVEFTP LPTCLQHRSC DTCMSSDLIF NCSWCHVLQR CSSGFDRYRQ ENSP00000323927/1-500 TSMSAVEFTP LPTCLQHRSC DACMSSDLTF NCSWCHVLQR CSSGFDRYRQ ENSBTAP00000025765/1-500 TSTSAVEFTP LPTCLQHRSC DACMSSDLTF NCSWCHVLQR CSSGFDRYRQ bmy_12726T0/1-336 ---------- --ACLQHRSC DTCMSSDLIF NCSWCHVLQR CSSGFDRYRQ BACU007001/1-560 TSTTAVEFTP LPTCLHHRSC DTCVSSDLIF NCSWCRVLQR CSSGFDRYRQ 401 450 ENSTTRP00000006325/1-495 EWLSYGCAQE AEGRTCEDFQ DEDSFSSSPD SSFSPFDGDL TTTSSSIFLD ENSP00000323927/1-500 EWMDYGCAQE AEGRMCEDFQ DEDHDSASPD TSFSPYDGDL TTTSSSLFID ENSBTAP00000025765/1-500 EWLAYGCAQE AEGRTCEDFQ DEDSYSSSPD SSFSPFDGDF TTTSSSLFVD bmy_12726T0/1-336 EWLSYGCAQE AEGRTCEDFQ DEDSFSSSPD SSFSPFDGDL TTTSSSLFVD BACU007001/1-560 EWLSYGCAQE AEGRTCEDFR DEDSFSSSPD SSFSPFDGDL TTTSSSLFVD 451 500 ENSTTRP00000006325/1-495 SLTTEDDTKL NPYAEGEGLQ NNLSPKTKGP PLHLGTIVGI VLAVLLLAAI ENSP00000323927/1-500 SLTTEDDTKL NPYAGGDGLQ NNLSPKTKGT PVHLGTIVGI VLAVLLVAAI ENSBTAP00000025765/1-500 SLTTEDDTKV NPYAGGDGLQ NNLAPKTTGS PVHLGTIVGI VLAVLLVASI bmy_12726T0/1-336 SLTTEDDTKL NPYAEGEGLQ NNLSPKTKGP PLHLGTIVGI VLAILLLAAI BACU007001/1-560 SLTTEDDTKL NPYAEGEGLQ NNLSPKTKGP PLHLGTIVGI VLAILLLAAI 501 550 ENSTTRP00000006325/1-495 ILAGIYINGH PTSNTALFFI ERRPRRWPAM KFRSHLNHST YTEVEPSGHE ENSP00000323927/1-500 ILAGIYINGH PTSNAALFFI ERRPHHWPAM KFRSHPDHST YAEVEPSGHE ENSBTAP00000025765/1-500 ILAGIYINGH PTSNAALFFI ERRPHHWPAM KFRNHPSHST YTEVEPSGHE bmy_12726T0/1-336 ILAGIYINGH PTSNAALFFI ERRPRHWPAM KFRNHLNHST YTEVEPSGHE BACU007001/1-560 ILAGIYINGH PTSNAALFFI ERRPHHWPAM KFRNHLNHST YTEVEPSGHE 551 600 ENSTTRP00000006325/1-495 KEGFVEAEQC ENSP00000323927/1-500 KEGFMEAEQC ENSBTAP00000025765/1-500 KEGFVEAEQC bmy_12726T0/1-336 KEGFVEAEQC BACU007001/1-560 KEGFVEAEQC