KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:18 2014 Check: 00 .. Name: ENSP00000315410/1-887 Len: 921 Check: 1164 Weight: 1.00 Name: ENSTTRP00000015840/1-887 Len: 921 Check: 3654 Weight: 1.00 Name: ENSBTAP00000025767/1-920 Len: 921 Check: 1577 Weight: 1.00 Name: BACU003759/1-720 Len: 921 Check: 5545 Weight: 1.00 Name: bmy_21655T0/1-478 Len: 921 Check: 6117 Weight: 1.00 // 1 50 ENSP00000315410/1-887 MMSDEKNLGV SQKLVSPSRS TSSCSSKQGS RQDSWEVVEG LRGEMNYTQE ENSTTRP00000015840/1-887 MMSDEKSLGV SPKLASPSRS TSSCSSKQGS RQDSWEVVEG LRGEVNYTQE ENSBTAP00000025767/1-920 -MSDEKSLAV SQKLVSPSRS TSSCSSKQGS RQDSWEVVEG LRGEMNYTQE BACU003759/1-720 ---------- ---------- ---------- ---------- ----MNYTQE bmy_21655T0/1-478 ---------- ---------- ---------- ---------- ----MNYTQE 51 100 ENSP00000315410/1-887 PPVQKGFLLK KRKWPLKGWH KRFFYLDKGI LKYAKSQTDI EREKLHGCID ENSTTRP00000015840/1-887 PPIQKGFLLK KRKWPLKGWH KRFFYLDKGI LKYAKNQSDI EREKLHGCID ENSBTAP00000025767/1-920 PPIQKGFLLK KRKWPLKGWH KRFFYLDRGI LKYAKNQTDI EREKLHGCID BACU003759/1-720 PPIQKGFLLK KRKWPLKGWH KRFFYLDKGI LKYAKNQSDI EREKLHGCID bmy_21655T0/1-478 PPIQKGFLLK KRKWPLKGWH K--------- ---------I EREKPHGCID 101 150 ENSP00000315410/1-887 VGLSVMSVKK SSKCIDLDTE EHIYHLKVKS EEVFDEWVSK LRHHRMYRQN ENSTTRP00000015840/1-887 VGLSVMSVKK SSKCIDLDTE EHIYHLKVKS EEVFDEWVSK LRHHRIYRQN ENSBTAP00000025767/1-920 VGLSVMSVKK SSKCIDLDTE EHIYHLKVKS EDVFDEWVSK LRHHRMYRQN BACU003759/1-720 VGLSVMSVKK SSKCIDLDTE EHIYHL---- ---------- ---------- bmy_21655T0/1-478 VGLSVMSVKK SSKCIDLDTE EHIYHLKVKS EEVFDEWVSK LRHHRMYRQN 151 200 ENSP00000315410/1-887 EIAMFPHEVN HFFSGSTITD SSSGVFDSIS SRKRSSISKQ NLFQTGSNVS ENSTTRP00000015840/1-887 EIAMFPHEVN HFFPGSAVTD SGSEVLDTIS SRKHSGISKQ NSFQTGSNLS ENSBTAP00000025767/1-920 EIAMFPHEVN HFFPGSTVPD SGPGVMDTIS SRKRSSISKQ NSFQTGSNLS BACU003759/1-720 ---------- ---------- ---------- --KRSSISKQ NSFQTGSNLS bmy_21655T0/1-478 EIAMFPHEVN HFFPGSTVTD SGSGVLDTIS SRKRSSISKQ NSFQTGSNLS 201 250 ENSP00000315410/1-887 FSCGGETRVP LWLQSSEDME KCSKDLAHCH AYLVEMSQLL QSMDVLHRTY ENSTTRP00000015840/1-887 FSCGGETRVP LWLQSSEDME KCSKELANCH DCLVEMSQLL QSMDVLHRTY ENSBTAP00000025767/1-920 FSCGGETRVP LWLQSSEDME KCSKDLAHCH AYLVEMSQLL QNMDILHRTY BACU003759/1-720 FSCGGETRVP LWLQSSEDME KCSKDLAHCQ ACLVEMSQLL QSMDVLHRTY bmy_21655T0/1-478 FSCGGETRVP LWLQSSEDME KCSKDLAHCQ ACLVEMSQLL QSMDVLHRTY 251 300 ENSP00000315410/1-887 SAPAINAIQG GSFESPKKEK RSHRRWRSRA IGKDAKGTLQ VPKPFSGPVR ENSTTRP00000015840/1-887 SAPAINVIQG GSFESPKKEK RSHRRWRSRA VGKDAKGTLQ VPKTFSGPVR ENSBTAP00000025767/1-920 SAPAINAIQG GAFESPKKEK RSHRRWRSRA LGKDAKGTLQ VPKPFSGPIR BACU003759/1-720 SAPAINVI-- ---------- ---------- ---------Q VPKPFSGPVR bmy_21655T0/1-478 SAPAINVIQG GAFESPKKEK RSHRRWRSRA VGKDAKGTLQ VPKPFSGPVR 301 350 ENSP00000315410/1-887 LHSSNPNLST LDFGEEKNYS DGSETSSEFS KMQEDLCHIA HKVYFTLRSA ENSTTRP00000015840/1-887 LHSSNPNLST LDFGEDKNYS DGSETSSEFS KMQEDLCHIA HKVYFTLRSA ENSBTAP00000025767/1-920 LHSSNPNLST LDFGEEKNYS DGSETSSEFS KMQEDLCHIA HKVYFTLRSA BACU003759/1-720 LHSSNPNLST LDFGEEKNYS DGSETSSEFS KMQEDLCHIA HKVYFTLRSA bmy_21655T0/1-478 LHSSNPNLST LDFGXEKNYS DGSETSSEFS KMQEDLCHIA HKVYFTLRSA 351 400 ENSP00000315410/1-887 FNIMSAEREK LKQLMEQDAS SSPSAQVIGL KNALSSALAQ NTDLKERLRR ENSTTRP00000015840/1-887 FNTISTEREK LKQLMEQDVS VSPSAQVLGL KHALSSALAQ NTDLKERLCR ENSBTAP00000025767/1-920 FNTISTEREK LKQLMEQDVS ASPSAQVLGL KHALSSALAQ NTDLKERLCR BACU003759/1-720 FNTILTEREK LKQLMEQDVS VSASAQVLGL KHALSSALAQ STDLKERLCR bmy_21655T0/1-478 FNTILTEREK LKQLMEQDVS VSPSAQVLGL KHALSSALAQ NTDLKERLCR 401 450 ENSP00000315410/1-887 IHAESLLLDS PAVAKSGDNL AEENSRDENR ALVHQLSNES RLSITDSLSE ENSTTRP00000015840/1-887 IHAESLLLDR PVAAKSGDRL AEENSRDDNR TLVHQLSNES RLSITDSLSE ENSBTAP00000025767/1-920 IHAESLLLDL PAAAKSGDGL AEENSRDDSR ALVHQLSNES RLSITDSLSE BACU003759/1-720 IHAESLVLDL PVAAKSGDGL AEENSRDDNR ALVHQLSNES RLSITDSLSE bmy_21655T0/1-478 IHAESLLLDL PVAAKSGDGL AEENSRDDNR ALVHQLSNES RLSITDSLSE 451 500 ENSP00000315410/1-887 FFDAQEVLLS PSSSENEISD DDSYVSDISD NLSLDNLSND LDNERQTLGP ENSTTRP00000015840/1-887 FFDAQEVLLS PSSSENEMSE DDSYVSDISD NLSLDNLSND LDNERQTLXX ENSBTAP00000025767/1-920 FFDAQEVLLS PSSSENEISE DDSYVSDISD NFSLDNLSND LDNERQTLGP BACU003759/1-720 FFDAQEVLLS PSSSENEISE DDSYVSDISD NLSLDNLSND LDNERQTLGP bmy_21655T0/1-478 FFDAQEVLLS PSSSENEISE DDSYVSDISD NLSLDNLSND LDNERQTL-- 501 550 ENSP00000315410/1-887 VLDSGREAKS RRRTCLPAPC PSSSNISLWN ILRNNIGKDL SKVAMPVELN ENSTTRP00000015840/1-887 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000025767/1-920 VIDSGGEARS KRRTCLPAPC PKSSNISLWN ILRNNIGKDL SKVAMPVELN BACU003759/1-720 VLPSGGEAKS KRRTCLPAPC PKSGNLSLWN ILRTNIGKDL SKVAMPVELN bmy_21655T0/1-478 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000315410/1-887 EPLNTLQRLC EELEYSELLD KAAQIPSPLE RMVYVAAFAI SAYASSYYRA ENSTTRP00000015840/1-887 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXVYVAAFAV SAYASSYFRA ENSBTAP00000025767/1-920 EPLNTLQRLC EELEYSELLD KAAQLPNALE RMVYVAAFAV SAYASSYFRA BACU003759/1-720 EPLNTLQRLC EELEYSELLD KAARTPSALE RMVYVAAFAV SAYASSYFRA bmy_21655T0/1-478 ---------- ---------- ---------- ------AFAV SAYASSYFRA 601 650 ENSP00000315410/1-887 GSKPFNPVLG ETYECIREDK GFQFFSEQVS HHPPISACHA ESRNFVFWQD ENSTTRP00000015840/1-887 GSKPFNPVLG ETYECIREDK GFQFFSEQVS HHPPISACHA ESGNFVFWQD ENSBTAP00000025767/1-920 GSKPFNPVLG ETYECIREDK GFRFFSEQVS HHPPISACHA ESANFVFWQD BACU003759/1-720 GSKPFNPVLG ETYECIREDK GFQFFSEQVS HHPPISACHA ESGNFVFWQD bmy_21655T0/1-478 GSKPFNPVLG ETYECIREDK GFQFFSEQ-- ---------- ---------- 651 700 ENSP00000315410/1-887 VRWKNKFWGK SMEIVPIGTT HVTLPVFGDH FEWNKVTSCI HNILSGQRWI ENSTTRP00000015840/1-887 MRWKNKFWGK SMEIVPIGTT HVTLPAFGDH FEWNKVTSCI HNILSGQRWI ENSBTAP00000025767/1-920 VRWKNKFWGK SMEIVPIGTT HVTLPAFGDH FEWNKVTSCI HNILSGQRWI BACU003759/1-720 MRWKNKFWGK SMEIVPIGTT HVTLPAFGDH FEWNKVTSCV HNILSGQRWI bmy_21655T0/1-478 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000315410/1-887 EHYGEIVIKN LHDDSCYCKV NFIKAKYWST NAHEIEGTVF DRSGKAVHRL ENSTTRP00000015840/1-887 EHYGEIVIKN VNDDSCHCKV NFIKAKYWST NAHEIEGTVF DKSGKAVHRL ENSBTAP00000025767/1-920 EHYGEIVIKN LNDDSCHCKV NFIKAKYWST NAHEIEGTVF DQSGKAVHRL BACU003759/1-720 EHYGEIVIKN LNDDSCHCKV NFIKAKYWST NAHEIE---- ---------- bmy_21655T0/1-478 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000315410/1-887 FGKWHESIYC GGGSSSACVW RANPMPKGYE QYYSFTQFAL ELNEMDPSSK ENSTTRP00000015840/1-887 FGKWHESIYC GGSSSSTCIW RAXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000025767/1-920 FGKWHESIYC GGSSSSACIW RANPMPKGYE QYYGFTQFAL ELNEMDPLLK BACU003759/1-720 ---------- ---------- --DPMPKGYE QYYGFTQFAL ELNEMDPLLK bmy_21655T0/1-478 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000315410/1-887 SLLPPTDTRF RPDQRFLEEG NLEEAEIQKQ RIEQLQRERR RVLEENHVEH ENSTTRP00000015840/1-887 XXXXXXXXXX XXXXXFLEEG SLEEAEIQKQ RIEQLQRERR RVLEENKVEH ENSBTAP00000025767/1-920 SLLPPTDTRF RPDQRFLEEG NLEEAEIQKQ RIEQLQRERR RVLEENKVEH BACU003759/1-720 SLLPPTDTRF RPDQRFLEEG SLEEAEIQKQ RIEQLQRERR RVLEENKVEH bmy_21655T0/1-478 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000315410/1-887 QPRFF----- ---------- --------RK SDDDSWVSNG TYLELR---- ENSTTRP00000015840/1-887 QPRFF----- ---------- --------RK SSDDSWVSSG TYLELR---- ENSBTAP00000025767/1-920 QPRFFRCVNG GVLRVIVGRV LDVAGKNVRK GGNCSAVAVL ELFQLEAGRD BACU003759/1-720 QPRFF----- ---------- --------RK SSDDSWVSSG TYLELR---- bmy_21655T0/1-478 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000315410/1-887 -KDLGFSKLD HPV------L W ENSTTRP00000015840/1-887 -KDLGFSKLD HPV------L W ENSBTAP00000025767/1-920 DREEEYGDLD VSIDTKESPK Y BACU003759/1-720 -KDLGFSKLD HPV------L W bmy_21655T0/1-478 ---------- ---------- -