KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:19 2014 Check: 00 .. Name: ENSTTRP00000011701/1-538 Len: 590 Check: 8884 Weight: 1.00 Name: bmy_11897T0/1-384 Len: 590 Check: 9480 Weight: 1.00 Name: ENSBTAP00000025779/1-536 Len: 590 Check: 1238 Weight: 1.00 Name: ENSP00000312811/1-543 Len: 590 Check: 3255 Weight: 1.00 Name: BACU013149/1-583 Len: 590 Check: 3160 Weight: 1.00 // 1 50 ENSTTRP00000011701/1-538 --VEGAFKRG RTGGCPSNSV AVPAAAPPVC QPKGTTNGHY AA------PR bmy_11897T0/1-384 --MLVPVNSD MAKR------ ---------C Q-----EGRE RV-------- ENSBTAP00000025779/1-536 ---VFINELS SPSRPPRFPV AVPAAAPPAC PPKAAANGAP PA------PR ENSP00000312811/1-543 --MKFPIETP RKQVNWDPKV AVPAAAPV-C QPKSATNGQP PAPAPTPTPR BACU013149/1-583 MSKVNLSHGN RKNKVW-LQV AVPAAAPPVC QPKGATNGHY AA------PR 51 100 ENSTTRP00000011701/1-538 LSISSRATVV ARMEGASQGA LQTVMKCKTV VAIFVVVVVY LVTGGLVFRA bmy_11897T0/1-384 -----RSSLI ------SHSG ANTIL----- ---------- -----LLSRT ENSBTAP00000025779/1-536 LAVSSRAAVV ARMEGAAQGG LQTVMKWKTV VAIFVVVVVY LVTGGLVFRA ENSP00000312811/1-543 LSISSRATVV ARMEGTSQGG LQTVMKWKTV VAIFVVVVVY LVTGGLVFRA BACU013149/1-583 LSISSRATVV ARMEGASQGG LQTVMKWKTV VAIFVVVVVY LVTGGLVFRA 101 150 ENSTTRP00000011701/1-538 LEQPFESSQK NTIAMEKAEF LRDHVCVSPQ ELETLIQHAL DADNAGVSPI bmy_11897T0/1-384 FS-------- ---------- -----CL--- ---------- ---------- ENSBTAP00000025779/1-536 LEQPFESSQK NTIALEKAEF LRDHICVSPQ ELETLIQHAL DADNAGVSPI ENSP00000312811/1-543 LEQPFESSQK NTIALEKAEF LRDHVCVSPQ ELETLIQHAL DADNAGVSPI BACU013149/1-583 LEQPFESSQK NTIALEKAEF LRDHICVSPQ ELETLIQHAL DADNAGVSPV 151 200 ENSTTRP00000011701/1-538 GNSSNNSSHW DLGSAFFFAG TVITTIGYGN IAPSTEGGKI FCILYAIFGI bmy_11897T0/1-384 ---------- ---------- ---------- -----EGSKN MSIQNNRYCQ ENSBTAP00000025779/1-536 GNSSNNSSHW DLGSAFFFAG TVITTIGYGN IAPSTEGGKI FCILYAIFGI ENSP00000312811/1-543 GNSSNNSSHW DLGSAFFFAG TVITTIGYGN IAPSTEGGKI FCILYAIFGI BACU013149/1-583 GNSSNNSSHW DLGSAFFFAG TVITTIGYGN IAPSTEGGKI FCILYAIFGI 201 250 ENSTTRP00000011701/1-538 PLFGFLLAGI GDQLGTIFGK SIARVEKVFR ---------- ---------- bmy_11897T0/1-384 NLTPIFLPFI ---------- ---------- ---------- ---------- ENSBTAP00000025779/1-536 PLFGFLLAGI GDQLGTIFGK SIARVEKVFR ---------- ---------- ENSP00000312811/1-543 PLFGFLLAGI GDQLGTIFGK SIARVEKVFR ---------- ---------- BACU013149/1-583 PLFGFLLAGI GDQLGTIFGK SIARVEKVFR VTFISLNLSF MFDSCHPISP 251 300 ENSTTRP00000011701/1-538 ---------- ---------- ----XXXXXX XXXXXXXXXX XXXXXXXXXX bmy_11897T0/1-384 ---------- ---------- ----KKQVSQ TKIRVISTIL FILAGCVVFV ENSBTAP00000025779/1-536 ---------- ---------- ----KKQVSQ TKIRVISTIL FILAGCVVFV ENSP00000312811/1-543 ---------- ---------- ----KKQVSQ TKIRVISTIL FILAGCIVFV BACU013149/1-583 VRTGAKKEAA SVEKHTVQGT WDAKKKQVSQ TKIRVISTIL FILAGCVVFV 301 350 ENSTTRP00000011701/1-538 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXGNA GINYREWYKP bmy_11897T0/1-384 TIPAVIFKYI EGWTALESIY FVVVTLTTVG FGDFVAGGNA GINYREWYKP ENSBTAP00000025779/1-536 TIPAVIFKYI EGWTALESIY FVVVTLTTVG FGDFVAGGNA GINYREWYKP ENSP00000312811/1-543 TIPAVIFKYI EGWTALESIY FVVVTLTTVG FGDFVAGGNA GINYREWYKP BACU013149/1-583 TIPAVIFKYI EGWTALESIY FVVVTLTTVG FGDFVAGGNA GINYREWYKP 351 400 ENSTTRP00000011701/1-538 LVWFWILVGL AYFAAVLSMI GDWLRVLSKK TKEEVGEIKA HAAEWKANVT bmy_11897T0/1-384 LVWFWILVGL AYFAAVLSMI GDWLRVLSKK TKEEVGEIKA HAAEWKANVT ENSBTAP00000025779/1-536 LVWFWILVGL AYFAAVLSMI GDWLRVLSKK TKEEVGEIKA HAAEWKANVT ENSP00000312811/1-543 LVWFWILVGL AYFAAVLSMI GDWLRVLSKK TKEEVGEIKA HAAEWKANVT BACU013149/1-583 LVWFWILVGL AYFAAVLSMI GDWLRVLSKK TKEEVGEIKA HAAEWKANVT 401 450 ENSTTRP00000011701/1-538 AEFRETRRRL SVEIHDKLQR AATLRSMERR RLGLDQRAHS LDMLSPEKRS bmy_11897T0/1-384 AEFRETRRRL SVEIHDKLQR AATLRSMERR RLGLDQRAHS LDMLSPEKRS ENSBTAP00000025779/1-536 AEFRETRRRL SVEIHDKLQR AATIRSMERR RLGLDQRAHS LDMLSPEKRS ENSP00000312811/1-543 AEFRETRRRL SVEIHDKLQR AATIRSMERR RLGLDQRAHS LDMLSPEKRS BACU013149/1-583 AEFRETRRRL SVEIHDKLQR AATLRSMERR RLGLDQRAHS LDMLSPEKRS 451 500 ENSTTRP00000011701/1-538 VFAALDAGRF KASSQDSINN RPNNLRLQGS EQLNKHGQGA SEDNIINKFG bmy_11897T0/1-384 VFAALDAGRF KASSQDSINN RPNNLRLQGS EQLSKHGQGA SEDNIINKFG ENSBTAP00000025779/1-536 VFAALDAGRC KASSQESIDH RPNNLRLQAS EPLQKRGQGA SEDNIVNKLG ENSP00000312811/1-543 VFAALDTGRF KASSQESINN RPNNLRLKGP EQLNKHGQGA SEDNIINKFG BACU013149/1-583 VFAALDAGRF KASSQDSINN RPNNLRLQGS EQLSKHGQGA SEDNIINKFG 501 550 ENSTTRP00000011701/1-538 SASRLTKRKN KDIRKTLPED VQKIYRTFRN YSLDEEKREE AAEKVCNPDH bmy_11897T0/1-384 STSRLTKRKN KDIRRTLPED VQKIYRTFRN YSLDEEKKED EAEKVCNPDH ENSBTAP00000025779/1-536 SASRLTKRKN RDLRKALPED VHRIYRTLRH YSLDEEKKED -TEKGCNSDH ENSP00000312811/1-543 STSRLTKRKN KDLKKTLPED VQKIYKTFRN YSLDEEKKEE ETEKMCNSDN BACU013149/1-583 STSRLTKRKN KDIRRTLPED VQKIYRTFRN YSLDEEKKEE EAEKVCNPDH 551 600 ENSTTRP00000011701/1-538 SSTAVLTDCI QPQAEMENGV APTDTKDQER ENNALLEGRN bmy_11897T0/1-384 SSTAVLTDCI QPQAEMENGV VPADTKDRER EDNALLEGRS ENSBTAP00000025779/1-536 SSTAVLTDCA QPPAGAGDGV GPADAKDAER DSSALLEARN ENSP00000312811/1-543 SSTAMLTDCI QQHAELENGM IPTDTKDREP ENNSLLEDRN BACU013149/1-583 SSTAVLTDCI QPQAEMENGA VPADTKDREG EDNALLEGRS