KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:19 2014 Check: 00 .. Name: ENSTTRP00000011332/1-445 Len: 548 Check: 6909 Weight: 1.00 Name: BACU017766/1-546 Len: 548 Check: 7746 Weight: 1.00 Name: bmy_09037T0/1-483 Len: 548 Check: 9840 Weight: 1.00 Name: ENSP00000395498/1-450 Len: 548 Check: 2197 Weight: 1.00 Name: ENSBTAP00000025783/1-459 Len: 548 Check: 7985 Weight: 1.00 // 1 50 ENSTTRP00000011332/1-445 ---------- ---------- ---------- ---------- ---------- BACU017766/1-546 MAPAEMALRS QRAPLGCGMN GNLGQKMQPC AAVTAYNPLC YRARFWGTSC bmy_09037T0/1-483 ---------- ---------- -MVGVQVQGL STSDVHT--- ---------- ENSP00000395498/1-450 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025783/1-459 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011332/1-445 ---------- --------VP RTIVSGHGGL NQLGGAFVNG RPLPEVVRQR BACU017766/1-546 PRVRELQADS LPGGPDNCPP DYCVSGHGGL NQLGGAFVNG RPLPEVVRQR bmy_09037T0/1-483 ------QADS LPGGPDNCPP DYCVSGHGGL NQLGGAFVNG RPLPEVVRQR ENSP00000395498/1-450 ---------- -------MPH NSIRSGHGGL NQLGGAFVNG RPLPEVVRQR ENSBTAP00000025783/1-459 ---------- -------VPP DYCLSGHGGL NQLGGAFVNG RPLPEVVRQR 101 150 ENSTTRP00000011332/1-445 IVDLAHQGVR PCDISRQLRV SHGCVSKILG --RYYETGSI RPGVIGGSKP BACU017766/1-546 IVDLAHQGVR PCDISRQLRV SHGCVSKILG --RYYETGSI RPGVIGGSKP bmy_09037T0/1-483 IVDLAHQGVR PCDISRQLRV SHGCVSKILG --RYYETGSI RPGVIGGSKP ENSP00000395498/1-450 IVDLAHQGVR PCDISRQLRV SHGCVSKILG --RYYETGSI RPGVIGGSKP ENSBTAP00000025783/1-459 IVDLAHQGVR PCDISRQLRV SHGCVSKILG RSRYYETGSI RPGVIGGSKP 151 200 ENSTTRP00000011332/1-445 KVATPKVVEK IGDYKRQNPT MFAWEIRDRL LAEGVCDNDT VPSVSSINRI BACU017766/1-546 KVATPKVVEK IGDYKRQNPT MFAWEIRDRL LAEGVCDNDT VPSVSSINRI bmy_09037T0/1-483 KVATPKVVEK IGDYKRQNPT MFAWEIRDRL LAEGVCDNDT VPSVSSINRI ENSP00000395498/1-450 KVATPKVVEK IGDYKRQNPT MFAWEIRDRL LAEGVCDNDT VPSVSSINRI ENSBTAP00000025783/1-459 KVATPKVVEK IGDYKRQNPT MFAWEIRDRL LAEGVCDNDT VPSVSSINRI 201 250 ENSTTRP00000011332/1-445 IRTKVQQPFN LPMDGCVATK SLSPGHTLIP SSAVTPPESP QSDSLGSTYS BACU017766/1-546 IRTKVQQPFN LPMDGCVAAK SLSPGHTLIP SSAVTPPESP QSDSLGSTYS bmy_09037T0/1-483 IRTKVQQPFN LPMDGCVAAK SLSPGHTLIP SSAVTPPESP QSDSLGSTYS ENSP00000395498/1-450 IRTKVQQPFN LPMDSCVATK SLSPGHTLIP SSAVTPPESP QSDSLGSTYS ENSBTAP00000025783/1-459 IRTKVQQPFN LPMDSCVATK SLSPGHTLIP SSAVTPPESP QSDSLGSTYS 251 300 ENSTTRP00000011332/1-445 ITGLLGVAQP GSDSKRKLDD SDQDSCRLSL DSQSSGSGPR KHLRTDAFSQ BACU017766/1-546 INGLLGIAQP GSDSKRKLDD SDQDSCRLSL DSQSSGSGPR KHLRTDAFSQ bmy_09037T0/1-483 INGLLGIAQP GSDSKRKLDD SDQDSCRLSL DSQSSGSGPR KHLRTDAFS- ENSP00000395498/1-450 INGLLGIAQP GSD-KRKMDD SDQDSCRLSI DSQSSSSGPR KHLRTDAFSQ ENSBTAP00000025783/1-459 INGLLGIAQP GSDSKRKMDD SDQDSCRLSI DSQSSSSGPR KHLRTDTFSQ 301 350 ENSTTRP00000011332/1-445 HHLEPLECPF DRQPYPEAYV SPSHTKGEQX XXXXXXXXXX XXXXXXXXXX BACU017766/1-546 HHLEPLECPF DRQHYPEAYV SPSHTKGEQG LYPLPLLNSA LDDGKATLTP bmy_09037T0/1-483 HHLEPLECPF DRQHYPEAYV SPSHTKGEQG LYPLPLLNSA LDDGKATLTP ENSP00000395498/1-450 HHLEPLECPF ERQHYPEAYA SPSHTKGEQG LYPLPLLNST LDDGKATLTP ENSBTAP00000025783/1-459 HHLESLECPF DRQHYPEAYA SPSHTKGEQG LYPLPLLNSA LDDGKATLTP 351 400 ENSTTRP00000011332/1-445 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU017766/1-546 SNTPLGRNLS THQTYPVVAD PHSPFAIKQE TPEVSSSSST PSSLSSSAFL bmy_09037T0/1-483 SNTPLGRNLS THQTYPVVAD PHSPFAIKQE TPEVSSSSST PSSLSSSAFL ENSP00000395498/1-450 SNTPLGRNLS THQTYPVVAD PHSPFAIKQE TPEVSSSSST PSSLSSSAFL ENSBTAP00000025783/1-459 SNTPLGRNLS THQTYPVVAD PHSPFAIKQE TPEVSSSSST PSSLSSSAFL 401 450 ENSTTRP00000011332/1-445 XXQQVGSGVP N--------- -AHAASVYGQ -TVQALLSGR EMVGPTLPGY BACU017766/1-546 DLQQVGSGVP AGASVPPFNA FPHAASVYGQ FTGQALLSGR EMVGPTLPGY bmy_09037T0/1-483 DLQQVGSGVP AGASVPPFNA FPHAASVYGQ FTGQALLSGR EMVGPTLPGY ENSP00000395498/1-450 DLQQVGSGVP ------PFNA FPHAASVYGQ FTGQALLSGR EMVGPTLPGY ENSBTAP00000025783/1-459 DLQQVGSGVP AGASVPPFNA FPHAASVYGQ FTGQALLSGR EMVGPTLPGY 451 500 ENSTTRP00000011332/1-445 PPHIPTSVQG SYTSSAIAGM VAGSEYSGNA YGHTPYSSYS EAWRFPNSSL BACU017766/1-546 PPHIPTSGQG SYASSAIAGM VAGSEYSGNA YGHTPYSSYS EAWRFPNSSL bmy_09037T0/1-483 PPHIPTSGQG SYASSAIAGM VAGSEYSGNA YGHTPYSSYS EAWRFPNSSL ENSP00000395498/1-450 PPHIPTSGQG SYASSAIAGM VAGSEYSGNA YGHTPYSSYS EAWRFPNSSL ENSBTAP00000025783/1-459 PPHIPTSGQG SYASSAIAGM VAGSEYSGNA YGHTPYSSYS EAWRFPNSSL 501 550 ENSTTRP00000011332/1-445 LSS------- -PYYYSSTTR PSA----PPT TAS-----AF DHL----- BACU017766/1-546 LNGDKEIQKI RSFYLTPKVK QRPIWLKSPH HAGMLSFKAM DDLSQNHS bmy_09037T0/1-483 LSS------- -PYYYSSTSR PSA----PPT TAA-----AF DHL----- ENSP00000395498/1-450 LSS------- -PYYYSSTSR PSA----PPT TAT-----AF DHL----- ENSBTAP00000025783/1-459 LSS------- -PYYYSSTSR PSA----PPT TAT-----AF DHL-----