KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:27:20 2014 Check: 00 ..
Name: bmy_20688T0/1-983 Len: 1212 Check: 1012 Weight: 1.00
Name: ENSTTRP00000010280/1-1169 Len: 1212 Check: 9985 Weight: 1.00
Name: ENSP00000370625/1-1174 Len: 1212 Check: 3056 Weight: 1.00
Name: ENSBTAP00000025800/1-1174 Len: 1212 Check: 2732 Weight: 1.00
Name: BACU000657/1-1067 Len: 1212 Check: 8562 Weight: 1.00
//
1 50
bmy_20688T0/1-983 -------MQY DEDDDEITPD LWQEACWIVI SSYFDEKGLV RQQLDSFDEF
ENSTTRP00000010280/1-1169 -------MQY DEDDDEITPD LWQEACWIVI SSYFDEKGLV RQQLDSFDEF
ENSP00000370625/1-1174 MYDADEDMQY DEDDDEITPD LWQEACWIVI SSYFDEKGLV RQQLDSFDEF
ENSBTAP00000025800/1-1174 MYDADEDMQY DEDDDEITPD LWQEACWIVI SSYFDEKGLV RQQLDSFDEF
BACU000657/1-1067 ---------- ---------- ---------- ---------- ----------
51 100
bmy_20688T0/1-983 IQMSVQRIVE DAPPIDLQAE AQHASGEVEE PPRYLLKFEQ IYLSKPTHWE
ENSTTRP00000010280/1-1169 IQMSVQRIVE DAPPIDLQAE AQHASGEVEE PPRYLLKFEQ IYLSKPTHWE
ENSP00000370625/1-1174 IQMSVQRIVE DAPPIDLQAE AQHASGEVEE PPRYLLKFEQ IYLSKPTHWE
ENSBTAP00000025800/1-1174 IQMSVQRIVE DAPPIDLQAE AQHASGEVEE PPRYLLKFEQ IYLSKPTHWE
BACU000657/1-1067 ---------- ---------- ---------- ---------- ----------
101 150
bmy_20688T0/1-983 RDGAPSPMMP NEARLRNLTY SAPLYVDITK TVIKEGEEQL QTQHQKTFIG
ENSTTRP00000010280/1-1169 RDGAPSPMMP NEARLRNLTY SAPLYVDITK TVIKEGEEQL QTQHQKTFIG
ENSP00000370625/1-1174 RDGAPSPMMP NEARLRNLTY SAPLYVDITK TVIKEGEEQL QTQHQKTFIG
ENSBTAP00000025800/1-1174 RDGAPSPMMP NEARLRNLTY SAPLYVDITK TVIKEGEEQL QTQHQKTFIG
BACU000657/1-1067 -------MMP NEARLRNLTY SAPLYVDITK TVIKEGEEQL QTQHQKTFIG
151 200
bmy_20688T0/1-983 KIPIMLRSTY CLLNGLTDRD LCELNECPLD PGGYFIINGS EKVLIAQEKM
ENSTTRP00000010280/1-1169 KIPIMLRSTY CLLNGLTDRD LCELNECPLD PGGYFIINGS EKVLIAQEKM
ENSP00000370625/1-1174 KIPIMLRSTY CLLNGLTDRD LCELNECPLD PGGYFIINGS EKVLIAQEKM
ENSBTAP00000025800/1-1174 KIPIMLRSTY CLLNGLTDRD LCELNECPLD PGGYFIINGS EKVLIAQEKM
BACU000657/1-1067 KIPIMLRSTY CLLNGLTDRD LCELNECPLD PGGYFIINGS EKVLIAQEKM
201 250
bmy_20688T0/1-983 ATNTVYVFAK KDSKYAYTGE CRSCLENSSR PTSTIWVSML ARGGQDEGGR
ENSTTRP00000010280/1-1169 ATNTVYVFAK KDSKYAYTGE CRSCLENSSR PTSTIWVSML ARGGQ-----
ENSP00000370625/1-1174 ATNTVYVFAK KDSKYAYTGE CRSCLENSSR PTSTIWVSML ARGGQ-----
ENSBTAP00000025800/1-1174 ATNTVYVFAK KDSKYAYTGE CRSCLENSSR PTSTIWVSML ARGGQ-----
BACU000657/1-1067 ATNTVYVFAK KDSKYAYTGE CRSCLENSSR PTSTIWVSML ARGGQ-----
251 300
bmy_20688T0/1-983 SVFTPAAKDH FQIQLGAVLE DLSRQRVENG AKKSAIGQRI VATLPYIKQE
ENSTTRP00000010280/1-1169 ---------- ---------- ---------G AKKSAIGQRI VATLPYIKQE
ENSP00000370625/1-1174 ---------- ---------- ---------G AKKSAIGQRI VATLPYIKQE
ENSBTAP00000025800/1-1174 ---------- ---------- ---------G AKKSAIGQRI VATLPYIKQE
BACU000657/1-1067 ---------- ---------- ---------G AKKSAIGQRI VATLPYIKQE
301 350
bmy_20688T0/1-983 VPIIIVFRAL GFVSDRDILE HIIYDFEDPE MMEMVKPSLD EAFVIQEQNV
ENSTTRP00000010280/1-1169 VPIIIVFRAL GFVSDRDILE HIIYDFEDPE MMEMVKPSLD EAFVIQEQNV
ENSP00000370625/1-1174 VPIIIVFRAL GFVSDRDILE HIIYDFEDPE MMEMVKPSLD EAFVIQEQNV
ENSBTAP00000025800/1-1174 VPIIIVFRAL GFVSDRDILE HIIYDFEDPE MMEMVKPSLD EAFVIQEQNV
BACU000657/1-1067 VPIIIVFRAL GFVSDRDILE HIIYDFEDPE MMEMVKPSLD EAFVIQEQNV
351 400
bmy_20688T0/1-983 ALNFIGSRGA KPGVTKEKRI KYAKEVLQKE MLPHVGVSDF CETKKAYFLG
ENSTTRP00000010280/1-1169 ALNFIGSRGA KPGVTKEKRI KYAKEVLQKE MLPHVGVSDF CETKKAYFLG
ENSP00000370625/1-1174 ALNFIGSRGA KPGVTKEKRI KYAKEVLQKE MLPHVGVSDF CETKKAYFLG
ENSBTAP00000025800/1-1174 ALNFIGSRGA KPGVTKEKRI KYAKEVLQKE MLPHVGVSDF CETKKAYFLG
BACU000657/1-1067 ALNFIGSRGA KPGVTKEKRI KYAKEVLQKE MLPHVGVSDF CETKKAYFLG
401 450
bmy_20688T0/1-983 YMVHRLLLAA LGRRELDDRD HYGNKRLDLA GPLLAFLFRG ----------
ENSTTRP00000010280/1-1169 YMVHRLLLAA LGRRELDDRD HYGNKRLDLA GPLLAFLFRG MFKNLLKEVR
ENSP00000370625/1-1174 YMVHRLLLAA LGRRELDDRD HYGNKRLDLA GPLLAFLFRG MFKNLLKEVR
ENSBTAP00000025800/1-1174 YMVHRLLLAA LGRRELDDRD HYGNKRLDLA GPLLAFLFRG MFKNLLKEVR
BACU000657/1-1067 YMVHRLLLAA LGRRELDDRD HYGNKRLDLA GPLLAFLFRG MFKNLLKEVR
451 500
bmy_20688T0/1-983 ---QSRMGKC IPF------- ---------- ---------- --CGXSVVTV
ENSTTRP00000010280/1-1169 IYAQKFIDRV KDFNLELAIK QR-ISDGRK- SLATGNWGEQ KKAHQARAGV
ENSP00000370625/1-1174 IYAQKFIDRG KDFNLELAIK TRIISDGLKY SLATGNWGDQ KKAHQARAGV
ENSBTAP00000025800/1-1174 IYAQKFIDRG KDFNLELAIK TRIISDGLKY SLATGNWGDQ KKAHQARAGV
BACU000657/1-1067 IYAQKFIDRG KDFNLELAIK TRIISDGLKY SLATGNWGDQ KKAHQARAGV
501 550
bmy_20688T0/1-983 VEVLNRLTFA STLSHLRRLN SPIGRDGKLA KPRQLHNTLW GMVCPAETPE
ENSTTRP00000010280/1-1169 SQVLNRLTFA STLSHLRRLN SPIGRDGKLA KPRQLHNTLW GMVCPAETPE
ENSP00000370625/1-1174 SQVLNRLTFA STLSHLRRLN SPIGRDGKLA KPRQLHNTLW GMVCPAETPE
ENSBTAP00000025800/1-1174 SQVLNRLTFA STLSHLRRLN SPIGRDGKLA KPRQLHNTLW GMVCPAETPE
BACU000657/1-1067 SQVLNRLTFA STLSHLRRLN SPIGRDGKLA KPRQLHNTLW GMVCPAETPE
551 600
bmy_20688T0/1-983 GHAVGLVKNL ALMAYISVGS QPSPILEFLE EWSMENLEEI SPAAIADATK
ENSTTRP00000010280/1-1169 GHAVGLVKNL ALMAYISVGS QPSPILEFLE EWSMENLEEI SPAAIADATK
ENSP00000370625/1-1174 GHAVGLVKNL ALMAYISVGS QPSPILEFLE EWSMENLEEI SPAAIADATK
ENSBTAP00000025800/1-1174 GHAVGLVKNL ALMAYISVGS QPSPILEFLE EWSMENLEEI SPAAIADATK
BACU000657/1-1067 GHAVGLVKNL ALMAYISVGS QPSPILEFLE EWSMENLEEI SPAAIADATK
601 650
bmy_20688T0/1-983 IFVNGCWVGI HKDPEQLMNT LRKLRRQMDI IVSE------ ----------
ENSTTRP00000010280/1-1169 IFVNGCWVGI HKDPEQLMNT LRKLRRQMDI IVSEVSMIRD IREREIRIYT
ENSP00000370625/1-1174 IFVNGCWVGI HKDPEQLMNT LRKLRRQMDI IVSEVSMIRD IREREIRIYT
ENSBTAP00000025800/1-1174 IFVNGCWVGI HKDPEQLMNT LRKLRRQMDI IVSEVSMIRD IREREIRIYT
BACU000657/1-1067 IFVNGCWVGI HKDPEQLMNT LRKLRRQMDI IVSEVSMIRD IREREIRIYT
651 700
bmy_20688T0/1-983 ---------- ---------- ---------- --------DL VASGVVEYID
ENSTTRP00000010280/1-1169 DAGRICRPLL IVEKQKLLLK KRHIDQLKER EYNNYSWQDL VASGVVEYID
ENSP00000370625/1-1174 DAGRICRPLL IVEKQKLLLK KRHIDQLKER EYNNYSWQDL VASGVVEYID
ENSBTAP00000025800/1-1174 DAGRICRPLL IVEKQKLLLK KRHIDQLKER EYNNYSWQDL VASGVVEYID
BACU000657/1-1067 DAGRICRPLL IVEKQKLLLK KRHIDQLKER EYNNYSWQDL VASGVVEYID
701 750
bmy_20688T0/1-983 TLEEETVMLA MTPDDLQEKE VAYCSTYTHC EIHPSMILGV CASIIPFPDH
ENSTTRP00000010280/1-1169 TLEEETVMLA MTPDDLQEKE VAYCSTYTHC EIHPSMILGV CASIIPFPDH
ENSP00000370625/1-1174 TLEEETVMLA MTPDDLQEKE VAYCSTYTHC EIHPSMILGV CASIIPFPDH
ENSBTAP00000025800/1-1174 TLEEETVMLA MTPDDLQEKE VAYCSTYTHC EIHPSMILGV CASIIPFPDH
BACU000657/1-1067 TLEEETVMLA MTPDDLQEKE VAYCSTYTHC EIHPSMILGV CASIIPFPDH
751 800
bmy_20688T0/1-983 NQSPRNTYQS AMGKQAMGVY ITNFHVRMDT LAHVLYYPQK PLVTTRSMEY
ENSTTRP00000010280/1-1169 NQSPRNTYQS AMGKQAMGVY ITNFHVRMDT LAHVLYYPQK PLVTTRSMEY
ENSP00000370625/1-1174 NQSPRNTYQS AMGKQAMGVY ITNFHVRMDT LAHVLYYPQK PLVTTRSMEY
ENSBTAP00000025800/1-1174 NQSPRNTYQS AMGKQAMGVY ITNFHVRMDT LAHVLYYPQK PLVTTRSMEY
BACU000657/1-1067 NQSPRNTYQS AMGKQAMGVY ITNFHVRMDT LAHVLYYPQK PLVTTRSMEY
801 850
bmy_20688T0/1-983 LRFRELPAGI NSIVAIASYT GYNQEDSVIM NRSAVDRGFF RSVFYRSYKE
ENSTTRP00000010280/1-1169 LRFRELPAGI NSIVAIASYT GYNQEDSVIM NRSAVDRGFF RSVFYRSYKE
ENSP00000370625/1-1174 LRFRELPAGI NSIVAIASYT GYNQEDSVIM NRSAVDRGFF RSVFYRSYKE
ENSBTAP00000025800/1-1174 LRFRELPAGI NSIVAIASYT GYNQEDSVIM NRSAVDRGFF RSVFYRSYKE
BACU000657/1-1067 LRFRELPAGI NSIVAIASYT GYNQEDSVIM NRSAVDRGFF RSVFYRSYKE
851 900
bmy_20688T0/1-983 QESKKGFDQE EVFEKPTRET CQGMRHAIYD KLDDDGLIAP GVRVSGDDVI
ENSTTRP00000010280/1-1169 QESKKGFDQE EVFEKPTRET CQGMRHAIYD KLDDDGLIAP GVRVSGDDVI
ENSP00000370625/1-1174 QESKKGFDQE EVFEKPTRET CQGMRHAIYD KLDDDGLIAP GVRVSGDDVI
ENSBTAP00000025800/1-1174 QESKKGFDQE EVFEKPTRET CQGMRHAIYD KLDDDGLIAP GVRVSGDDVI
BACU000657/1-1067 QESKKGFDQE EVFEKPTRET CQGMRHAIYD KLDDDGLIAP GVRVSGDDVI
901 950
bmy_20688T0/1-983 IGKTVTLPEN EDELEGTNRR YTKRDCSTFL RTSETGIVDQ VMVTLNQEGY
ENSTTRP00000010280/1-1169 IGKTVTLPEN EDELEGTNRR YTKRDCSTFL RTSETGIVDQ VMVTLNQEGY
ENSP00000370625/1-1174 IGKTVTLPEN EDELESTNRR YTKRDCSTFL RTSETGIVDQ VMVTLNQEGY
ENSBTAP00000025800/1-1174 IGKTVTLPEN EDELEGTNRR YTKRDCSTFL RTSETGIVDQ VMVTLNQEGY
BACU000657/1-1067 IGKTVTLPEN EDELEGTNRR YTKRDCSTFL RTSETGIVDQ VMVTLNQEGY
951 1000
bmy_20688T0/1-983 KFCKIRVRSV RIPQIGDKFA SRHGQKGTCG IQYRQE---- ----------
ENSTTRP00000010280/1-1169 KFCKIRVRSV RIPQIGDKFA SRHGQKGTCG IQYRQEKIPL DMPFTCEGIT
ENSP00000370625/1-1174 KFCKIRVRSV RIPQIGDKFA SRHGQKGTCG IQYRQE---- DMPFTCEGIT
ENSBTAP00000025800/1-1174 KFCKIRVRSV RIPQIGDKFA SRHGQKGTCG IQYRQE---- DMPFTCEGIT
BACU000657/1-1067 KFCKIRVRSV RIPQIGDKFA SRHGQKGTCG IQYRQE---- DMPFTCEGIT
1001 1050
bmy_20688T0/1-983 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010280/1-1169 PDIIINPHAI PSRMTIGHLI ECLQGKVSAN KGEIGDATPF NDAVNVQKIS
ENSP00000370625/1-1174 PDIIINPHAI PSRMTIGHLI ECLQGKVSAN KGEIGDATPF NDAVNVQKIS
ENSBTAP00000025800/1-1174 PDIIINPHAI PSRMTIGHLI ECLQGKVSAN KGEIGDATPF NDAVNVQKIS
BACU000657/1-1067 PDIIINPHAI PSRMTIGHLI ECLQGKVSAN KGEIGDATPF NDAVNVQKIS
1051 1100
bmy_20688T0/1-983 ---------- ------YRG- ---------- ---EFY---- ----------
ENSTTRP00000010280/1-1169 NLLSDYGYHL RGNEVLYNGF TGRKITSQIF IGPTYYQRLK HMVDDKIHSR
ENSP00000370625/1-1174 NLLSDYGYHL RGNEVLYNGF TGRKITSQIF IGPTYYQRLK HMVDDKIHSR
ENSBTAP00000025800/1-1174 NLLSDYGYHL RGNEVLYNGF TGRKITSQIF IGPTYYQRLK HMVDDKIHSR
BACU000657/1-1067 NLLSDYGYHL RGNEVLYNGF TGRKITSQIF IGPTYYQRLK HMVDDKIHSR
1101 1150
bmy_20688T0/1-983 ---------- --------DG GLRFGEMERD CQIAHGAAQF LRERLFEASD
ENSTTRP00000010280/1-1169 ARGPIQILNR QPMEGRSRDG GLRFGEMERD CQIAHGAAQF LRERLFEASD
ENSP00000370625/1-1174 ARGPIQILNR QPMEGRSRDG GLRFGEMERD CQIAHGAAQF LRERLFEASD
ENSBTAP00000025800/1-1174 ARGPIQILNR QPMEGRSRDG GLRFGEMERD CQIAHGAAQF LRERLFEASD
BACU000657/1-1067 ARGPIQILNR QPMEGRSRDG GLRFGEMERD CQIAHGAAQF LRERLFEASD
1151 1200
bmy_20688T0/1-983 PYQVHVCNLC GIMAIANTRT HTYECRGCRN KTQISLVRMP YACKLLFQEL
ENSTTRP00000010280/1-1169 PYQVHVCNLC GIMAIANTRT HTYECRGCRN KTQISLVRMP YACKLLFQEL
ENSP00000370625/1-1174 PYQVHVCNLC GIMAIANTRT HTYECRGCRN KTQISLVRMP YACKLLFQEL
ENSBTAP00000025800/1-1174 PYQVHVCNLC GIMAIANTRT HTYECRGCRN KTQISLVRMP YACKLLFQEL
BACU000657/1-1067 PYQVHVCNLC GIMAIANTRT HTYECRGCRN KTQISLVRMP YACKLLFQEL
1201 1250
bmy_20688T0/1-983 MSMSIAPRMM SV
ENSTTRP00000010280/1-1169 MSMSIAPRMM SV
ENSP00000370625/1-1174 MSMSIAPRMM SV
ENSBTAP00000025800/1-1174 MSMSIAPRMM SV
BACU000657/1-1067 MSMSIAPRMM SV