KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:20 2014 Check: 00 .. Name: bmy_20688T0/1-983 Len: 1212 Check: 1012 Weight: 1.00 Name: ENSTTRP00000010280/1-1169 Len: 1212 Check: 9985 Weight: 1.00 Name: ENSP00000370625/1-1174 Len: 1212 Check: 3056 Weight: 1.00 Name: ENSBTAP00000025800/1-1174 Len: 1212 Check: 2732 Weight: 1.00 Name: BACU000657/1-1067 Len: 1212 Check: 8562 Weight: 1.00 // 1 50 bmy_20688T0/1-983 -------MQY DEDDDEITPD LWQEACWIVI SSYFDEKGLV RQQLDSFDEF ENSTTRP00000010280/1-1169 -------MQY DEDDDEITPD LWQEACWIVI SSYFDEKGLV RQQLDSFDEF ENSP00000370625/1-1174 MYDADEDMQY DEDDDEITPD LWQEACWIVI SSYFDEKGLV RQQLDSFDEF ENSBTAP00000025800/1-1174 MYDADEDMQY DEDDDEITPD LWQEACWIVI SSYFDEKGLV RQQLDSFDEF BACU000657/1-1067 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_20688T0/1-983 IQMSVQRIVE DAPPIDLQAE AQHASGEVEE PPRYLLKFEQ IYLSKPTHWE ENSTTRP00000010280/1-1169 IQMSVQRIVE DAPPIDLQAE AQHASGEVEE PPRYLLKFEQ IYLSKPTHWE ENSP00000370625/1-1174 IQMSVQRIVE DAPPIDLQAE AQHASGEVEE PPRYLLKFEQ IYLSKPTHWE ENSBTAP00000025800/1-1174 IQMSVQRIVE DAPPIDLQAE AQHASGEVEE PPRYLLKFEQ IYLSKPTHWE BACU000657/1-1067 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_20688T0/1-983 RDGAPSPMMP NEARLRNLTY SAPLYVDITK TVIKEGEEQL QTQHQKTFIG ENSTTRP00000010280/1-1169 RDGAPSPMMP NEARLRNLTY SAPLYVDITK TVIKEGEEQL QTQHQKTFIG ENSP00000370625/1-1174 RDGAPSPMMP NEARLRNLTY SAPLYVDITK TVIKEGEEQL QTQHQKTFIG ENSBTAP00000025800/1-1174 RDGAPSPMMP NEARLRNLTY SAPLYVDITK TVIKEGEEQL QTQHQKTFIG BACU000657/1-1067 -------MMP NEARLRNLTY SAPLYVDITK TVIKEGEEQL QTQHQKTFIG 151 200 bmy_20688T0/1-983 KIPIMLRSTY CLLNGLTDRD LCELNECPLD PGGYFIINGS EKVLIAQEKM ENSTTRP00000010280/1-1169 KIPIMLRSTY CLLNGLTDRD LCELNECPLD PGGYFIINGS EKVLIAQEKM ENSP00000370625/1-1174 KIPIMLRSTY CLLNGLTDRD LCELNECPLD PGGYFIINGS EKVLIAQEKM ENSBTAP00000025800/1-1174 KIPIMLRSTY CLLNGLTDRD LCELNECPLD PGGYFIINGS EKVLIAQEKM BACU000657/1-1067 KIPIMLRSTY CLLNGLTDRD LCELNECPLD PGGYFIINGS EKVLIAQEKM 201 250 bmy_20688T0/1-983 ATNTVYVFAK KDSKYAYTGE CRSCLENSSR PTSTIWVSML ARGGQDEGGR ENSTTRP00000010280/1-1169 ATNTVYVFAK KDSKYAYTGE CRSCLENSSR PTSTIWVSML ARGGQ----- ENSP00000370625/1-1174 ATNTVYVFAK KDSKYAYTGE CRSCLENSSR PTSTIWVSML ARGGQ----- ENSBTAP00000025800/1-1174 ATNTVYVFAK KDSKYAYTGE CRSCLENSSR PTSTIWVSML ARGGQ----- BACU000657/1-1067 ATNTVYVFAK KDSKYAYTGE CRSCLENSSR PTSTIWVSML ARGGQ----- 251 300 bmy_20688T0/1-983 SVFTPAAKDH FQIQLGAVLE DLSRQRVENG AKKSAIGQRI VATLPYIKQE ENSTTRP00000010280/1-1169 ---------- ---------- ---------G AKKSAIGQRI VATLPYIKQE ENSP00000370625/1-1174 ---------- ---------- ---------G AKKSAIGQRI VATLPYIKQE ENSBTAP00000025800/1-1174 ---------- ---------- ---------G AKKSAIGQRI VATLPYIKQE BACU000657/1-1067 ---------- ---------- ---------G AKKSAIGQRI VATLPYIKQE 301 350 bmy_20688T0/1-983 VPIIIVFRAL GFVSDRDILE HIIYDFEDPE MMEMVKPSLD EAFVIQEQNV ENSTTRP00000010280/1-1169 VPIIIVFRAL GFVSDRDILE HIIYDFEDPE MMEMVKPSLD EAFVIQEQNV ENSP00000370625/1-1174 VPIIIVFRAL GFVSDRDILE HIIYDFEDPE MMEMVKPSLD EAFVIQEQNV ENSBTAP00000025800/1-1174 VPIIIVFRAL GFVSDRDILE HIIYDFEDPE MMEMVKPSLD EAFVIQEQNV BACU000657/1-1067 VPIIIVFRAL GFVSDRDILE HIIYDFEDPE MMEMVKPSLD EAFVIQEQNV 351 400 bmy_20688T0/1-983 ALNFIGSRGA KPGVTKEKRI KYAKEVLQKE MLPHVGVSDF CETKKAYFLG ENSTTRP00000010280/1-1169 ALNFIGSRGA KPGVTKEKRI KYAKEVLQKE MLPHVGVSDF CETKKAYFLG ENSP00000370625/1-1174 ALNFIGSRGA KPGVTKEKRI KYAKEVLQKE MLPHVGVSDF CETKKAYFLG ENSBTAP00000025800/1-1174 ALNFIGSRGA KPGVTKEKRI KYAKEVLQKE MLPHVGVSDF CETKKAYFLG BACU000657/1-1067 ALNFIGSRGA KPGVTKEKRI KYAKEVLQKE MLPHVGVSDF CETKKAYFLG 401 450 bmy_20688T0/1-983 YMVHRLLLAA LGRRELDDRD HYGNKRLDLA GPLLAFLFRG ---------- ENSTTRP00000010280/1-1169 YMVHRLLLAA LGRRELDDRD HYGNKRLDLA GPLLAFLFRG MFKNLLKEVR ENSP00000370625/1-1174 YMVHRLLLAA LGRRELDDRD HYGNKRLDLA GPLLAFLFRG MFKNLLKEVR ENSBTAP00000025800/1-1174 YMVHRLLLAA LGRRELDDRD HYGNKRLDLA GPLLAFLFRG MFKNLLKEVR BACU000657/1-1067 YMVHRLLLAA LGRRELDDRD HYGNKRLDLA GPLLAFLFRG MFKNLLKEVR 451 500 bmy_20688T0/1-983 ---QSRMGKC IPF------- ---------- ---------- --CGXSVVTV ENSTTRP00000010280/1-1169 IYAQKFIDRV KDFNLELAIK QR-ISDGRK- SLATGNWGEQ KKAHQARAGV ENSP00000370625/1-1174 IYAQKFIDRG KDFNLELAIK TRIISDGLKY SLATGNWGDQ KKAHQARAGV ENSBTAP00000025800/1-1174 IYAQKFIDRG KDFNLELAIK TRIISDGLKY SLATGNWGDQ KKAHQARAGV BACU000657/1-1067 IYAQKFIDRG KDFNLELAIK TRIISDGLKY SLATGNWGDQ KKAHQARAGV 501 550 bmy_20688T0/1-983 VEVLNRLTFA STLSHLRRLN SPIGRDGKLA KPRQLHNTLW GMVCPAETPE ENSTTRP00000010280/1-1169 SQVLNRLTFA STLSHLRRLN SPIGRDGKLA KPRQLHNTLW GMVCPAETPE ENSP00000370625/1-1174 SQVLNRLTFA STLSHLRRLN SPIGRDGKLA KPRQLHNTLW GMVCPAETPE ENSBTAP00000025800/1-1174 SQVLNRLTFA STLSHLRRLN SPIGRDGKLA KPRQLHNTLW GMVCPAETPE BACU000657/1-1067 SQVLNRLTFA STLSHLRRLN SPIGRDGKLA KPRQLHNTLW GMVCPAETPE 551 600 bmy_20688T0/1-983 GHAVGLVKNL ALMAYISVGS QPSPILEFLE EWSMENLEEI SPAAIADATK ENSTTRP00000010280/1-1169 GHAVGLVKNL ALMAYISVGS QPSPILEFLE EWSMENLEEI SPAAIADATK ENSP00000370625/1-1174 GHAVGLVKNL ALMAYISVGS QPSPILEFLE EWSMENLEEI SPAAIADATK ENSBTAP00000025800/1-1174 GHAVGLVKNL ALMAYISVGS QPSPILEFLE EWSMENLEEI SPAAIADATK BACU000657/1-1067 GHAVGLVKNL ALMAYISVGS QPSPILEFLE EWSMENLEEI SPAAIADATK 601 650 bmy_20688T0/1-983 IFVNGCWVGI HKDPEQLMNT LRKLRRQMDI IVSE------ ---------- ENSTTRP00000010280/1-1169 IFVNGCWVGI HKDPEQLMNT LRKLRRQMDI IVSEVSMIRD IREREIRIYT ENSP00000370625/1-1174 IFVNGCWVGI HKDPEQLMNT LRKLRRQMDI IVSEVSMIRD IREREIRIYT ENSBTAP00000025800/1-1174 IFVNGCWVGI HKDPEQLMNT LRKLRRQMDI IVSEVSMIRD IREREIRIYT BACU000657/1-1067 IFVNGCWVGI HKDPEQLMNT LRKLRRQMDI IVSEVSMIRD IREREIRIYT 651 700 bmy_20688T0/1-983 ---------- ---------- ---------- --------DL VASGVVEYID ENSTTRP00000010280/1-1169 DAGRICRPLL IVEKQKLLLK KRHIDQLKER EYNNYSWQDL VASGVVEYID ENSP00000370625/1-1174 DAGRICRPLL IVEKQKLLLK KRHIDQLKER EYNNYSWQDL VASGVVEYID ENSBTAP00000025800/1-1174 DAGRICRPLL IVEKQKLLLK KRHIDQLKER EYNNYSWQDL VASGVVEYID BACU000657/1-1067 DAGRICRPLL IVEKQKLLLK KRHIDQLKER EYNNYSWQDL VASGVVEYID 701 750 bmy_20688T0/1-983 TLEEETVMLA MTPDDLQEKE VAYCSTYTHC EIHPSMILGV CASIIPFPDH ENSTTRP00000010280/1-1169 TLEEETVMLA MTPDDLQEKE VAYCSTYTHC EIHPSMILGV CASIIPFPDH ENSP00000370625/1-1174 TLEEETVMLA MTPDDLQEKE VAYCSTYTHC EIHPSMILGV CASIIPFPDH ENSBTAP00000025800/1-1174 TLEEETVMLA MTPDDLQEKE VAYCSTYTHC EIHPSMILGV CASIIPFPDH BACU000657/1-1067 TLEEETVMLA MTPDDLQEKE VAYCSTYTHC EIHPSMILGV CASIIPFPDH 751 800 bmy_20688T0/1-983 NQSPRNTYQS AMGKQAMGVY ITNFHVRMDT LAHVLYYPQK PLVTTRSMEY ENSTTRP00000010280/1-1169 NQSPRNTYQS AMGKQAMGVY ITNFHVRMDT LAHVLYYPQK PLVTTRSMEY ENSP00000370625/1-1174 NQSPRNTYQS AMGKQAMGVY ITNFHVRMDT LAHVLYYPQK PLVTTRSMEY ENSBTAP00000025800/1-1174 NQSPRNTYQS AMGKQAMGVY ITNFHVRMDT LAHVLYYPQK PLVTTRSMEY BACU000657/1-1067 NQSPRNTYQS AMGKQAMGVY ITNFHVRMDT LAHVLYYPQK PLVTTRSMEY 801 850 bmy_20688T0/1-983 LRFRELPAGI NSIVAIASYT GYNQEDSVIM NRSAVDRGFF RSVFYRSYKE ENSTTRP00000010280/1-1169 LRFRELPAGI NSIVAIASYT GYNQEDSVIM NRSAVDRGFF RSVFYRSYKE ENSP00000370625/1-1174 LRFRELPAGI NSIVAIASYT GYNQEDSVIM NRSAVDRGFF RSVFYRSYKE ENSBTAP00000025800/1-1174 LRFRELPAGI NSIVAIASYT GYNQEDSVIM NRSAVDRGFF RSVFYRSYKE BACU000657/1-1067 LRFRELPAGI NSIVAIASYT GYNQEDSVIM NRSAVDRGFF RSVFYRSYKE 851 900 bmy_20688T0/1-983 QESKKGFDQE EVFEKPTRET CQGMRHAIYD KLDDDGLIAP GVRVSGDDVI ENSTTRP00000010280/1-1169 QESKKGFDQE EVFEKPTRET CQGMRHAIYD KLDDDGLIAP GVRVSGDDVI ENSP00000370625/1-1174 QESKKGFDQE EVFEKPTRET CQGMRHAIYD KLDDDGLIAP GVRVSGDDVI ENSBTAP00000025800/1-1174 QESKKGFDQE EVFEKPTRET CQGMRHAIYD KLDDDGLIAP GVRVSGDDVI BACU000657/1-1067 QESKKGFDQE EVFEKPTRET CQGMRHAIYD KLDDDGLIAP GVRVSGDDVI 901 950 bmy_20688T0/1-983 IGKTVTLPEN EDELEGTNRR YTKRDCSTFL RTSETGIVDQ VMVTLNQEGY ENSTTRP00000010280/1-1169 IGKTVTLPEN EDELEGTNRR YTKRDCSTFL RTSETGIVDQ VMVTLNQEGY ENSP00000370625/1-1174 IGKTVTLPEN EDELESTNRR YTKRDCSTFL RTSETGIVDQ VMVTLNQEGY ENSBTAP00000025800/1-1174 IGKTVTLPEN EDELEGTNRR YTKRDCSTFL RTSETGIVDQ VMVTLNQEGY BACU000657/1-1067 IGKTVTLPEN EDELEGTNRR YTKRDCSTFL RTSETGIVDQ VMVTLNQEGY 951 1000 bmy_20688T0/1-983 KFCKIRVRSV RIPQIGDKFA SRHGQKGTCG IQYRQE---- ---------- ENSTTRP00000010280/1-1169 KFCKIRVRSV RIPQIGDKFA SRHGQKGTCG IQYRQEKIPL DMPFTCEGIT ENSP00000370625/1-1174 KFCKIRVRSV RIPQIGDKFA SRHGQKGTCG IQYRQE---- DMPFTCEGIT ENSBTAP00000025800/1-1174 KFCKIRVRSV RIPQIGDKFA SRHGQKGTCG IQYRQE---- DMPFTCEGIT BACU000657/1-1067 KFCKIRVRSV RIPQIGDKFA SRHGQKGTCG IQYRQE---- DMPFTCEGIT 1001 1050 bmy_20688T0/1-983 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010280/1-1169 PDIIINPHAI PSRMTIGHLI ECLQGKVSAN KGEIGDATPF NDAVNVQKIS ENSP00000370625/1-1174 PDIIINPHAI PSRMTIGHLI ECLQGKVSAN KGEIGDATPF NDAVNVQKIS ENSBTAP00000025800/1-1174 PDIIINPHAI PSRMTIGHLI ECLQGKVSAN KGEIGDATPF NDAVNVQKIS BACU000657/1-1067 PDIIINPHAI PSRMTIGHLI ECLQGKVSAN KGEIGDATPF NDAVNVQKIS 1051 1100 bmy_20688T0/1-983 ---------- ------YRG- ---------- ---EFY---- ---------- ENSTTRP00000010280/1-1169 NLLSDYGYHL RGNEVLYNGF TGRKITSQIF IGPTYYQRLK HMVDDKIHSR ENSP00000370625/1-1174 NLLSDYGYHL RGNEVLYNGF TGRKITSQIF IGPTYYQRLK HMVDDKIHSR ENSBTAP00000025800/1-1174 NLLSDYGYHL RGNEVLYNGF TGRKITSQIF IGPTYYQRLK HMVDDKIHSR BACU000657/1-1067 NLLSDYGYHL RGNEVLYNGF TGRKITSQIF IGPTYYQRLK HMVDDKIHSR 1101 1150 bmy_20688T0/1-983 ---------- --------DG GLRFGEMERD CQIAHGAAQF LRERLFEASD ENSTTRP00000010280/1-1169 ARGPIQILNR QPMEGRSRDG GLRFGEMERD CQIAHGAAQF LRERLFEASD ENSP00000370625/1-1174 ARGPIQILNR QPMEGRSRDG GLRFGEMERD CQIAHGAAQF LRERLFEASD ENSBTAP00000025800/1-1174 ARGPIQILNR QPMEGRSRDG GLRFGEMERD CQIAHGAAQF LRERLFEASD BACU000657/1-1067 ARGPIQILNR QPMEGRSRDG GLRFGEMERD CQIAHGAAQF LRERLFEASD 1151 1200 bmy_20688T0/1-983 PYQVHVCNLC GIMAIANTRT HTYECRGCRN KTQISLVRMP YACKLLFQEL ENSTTRP00000010280/1-1169 PYQVHVCNLC GIMAIANTRT HTYECRGCRN KTQISLVRMP YACKLLFQEL ENSP00000370625/1-1174 PYQVHVCNLC GIMAIANTRT HTYECRGCRN KTQISLVRMP YACKLLFQEL ENSBTAP00000025800/1-1174 PYQVHVCNLC GIMAIANTRT HTYECRGCRN KTQISLVRMP YACKLLFQEL BACU000657/1-1067 PYQVHVCNLC GIMAIANTRT HTYECRGCRN KTQISLVRMP YACKLLFQEL 1201 1250 bmy_20688T0/1-983 MSMSIAPRMM SV ENSTTRP00000010280/1-1169 MSMSIAPRMM SV ENSP00000370625/1-1174 MSMSIAPRMM SV ENSBTAP00000025800/1-1174 MSMSIAPRMM SV BACU000657/1-1067 MSMSIAPRMM SV