KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:22 2014 Check: 00 .. Name: ENSTTRP00000004398/1-862 Len: 1174 Check: 6328 Weight: 1.00 Name: BACU017115/1-801 Len: 1174 Check: 337 Weight: 1.00 Name: ENSP00000266214/1-870 Len: 1174 Check: 8083 Weight: 1.00 Name: bmy_02462T0/1-855 Len: 1174 Check: 1578 Weight: 1.00 Name: ENSBTAP00000025815/1-843 Len: 1174 Check: 3622 Weight: 1.00 // 1 50 ENSTTRP00000004398/1-862 ---------- ---------- ---------- -MEGAGPRGA GPARRRG--- BACU017115/1-801 MAEEQEFAQL CKLPAQPSHP HCVSNTYRSA QHSQALLRGL LALRNSGILF ENSP00000266214/1-870 ---------- ---------- ---------- -MEGAGPRGA GPARRRG--- bmy_02462T0/1-855 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025815/1-843 ---------- ---------- ---------- -MEGAGPRGA GPARRRG--- 51 100 ENSTTRP00000004398/1-862 ---------- ---------- ---------A GGPPPPLPPL ---------- BACU017115/1-801 DVVLVVEGRH IEAHRILLAA SCDYFRGMFA GGLKEMEQEE VLIHGVSYNA ENSP00000266214/1-870 ---------- ---------- ---------A GGPPSPLLPS LLL------- bmy_02462T0/1-855 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025815/1-843 ---------- ---------- ---------A GGPS------ -LL------- 101 150 ENSTTRP00000004398/1-862 ---------- ----LLLLWL LPG-AAPQEL SPR-RNECHA PDSQELTC-- BACU017115/1-801 MCQILHFIYT SELELSLSNV QETLVAACQL QVYAHAGATL DGKMYITCGR ENSP00000266214/1-870 ---------- ----LLLLWM LPDTVAPQEL NPRGRNVCRA PGSQVPTC-- bmy_02462T0/1-855 ---------- ---------- ---------- ---------- --SQELTC-- ENSBTAP00000025815/1-843 ---------- ----LLLLWL LPGPTAPQEL SPRGRNVCRA PGSQELTC-- 151 200 ENSTTRP00000004398/1-862 ---------- C--------- ---------- ---------- ---------- BACU017115/1-801 RGEDYLKETH CYDPGSDTWH TLADGMVRRA WHGMATLLDK LYVVGGSNND ENSP00000266214/1-870 ---------- C--------- ---------- ---------- ---------- bmy_02462T0/1-855 ---------- C--------- ---------- ---------- ---------- ENSBTAP00000025815/1-843 ---------- C--------- ---------- ---------- ---------- 201 250 ENSTTRP00000004398/1-862 AGWRQQGDEC ---------- ---------- ---GIA---- ---------- BACU017115/1-801 AGYRRDVHQV ACYSCKSGQW SSVCPLPAGH GEPGIAVLDN RIYVLGGRSH ENSP00000266214/1-870 AGWRQQGDEC ---------- ---------- ---GIA---- ---------- bmy_02462T0/1-855 AGWRQQGDEC ---------- ---------- ---GIA---- ---------- ENSBTAP00000025815/1-843 AGWRQQGDEC ---------- ---------- ---GIA---- ---------- 251 300 ENSTTRP00000004398/1-862 ---------- ---------- ---------- ---------- ---------- BACU017115/1-801 NRGSRTGYVH IYDVEKDCWE EGPQLDNSIS GLAACVLTLP RSLLLEPPRG ENSP00000266214/1-870 ---------- ---------- ---------- ---------- ---------- bmy_02462T0/1-855 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025815/1-843 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000004398/1-862 ---------- ---------- --------VC EGNSTCSENE VCVRPGECRC BACU017115/1-801 TPDRSQADQD FASEVMSVSD WEEFDNSTVC EGNSTCSENE VCVRPGECRC ENSP00000266214/1-870 ---------- ---------- --------VC EGNSTCSENE VCVRPGECRC bmy_02462T0/1-855 ---------- ---------- --------VC EGNSTCSENE VCVRPGECRC ENSBTAP00000025815/1-843 ---------- ---------- --------VC EGNSTCSENE VCVRPGECRC 351 400 ENSTTRP00000004398/1-862 RHGYFGANCD TKCPRQFWGP DCKELCVCHP HGQCEDVTGQ CTCHARRWGA BACU017115/1-801 RHGYFGANCD TKCPRQFWGP DCKELCVCHP HGQCEDVTGQ CTCHARRWGA ENSP00000266214/1-870 RHGYFGANCD TKCPRQFWGP DCKELCSCHP HGQCEDVTGQ CTCHARRWGA bmy_02462T0/1-855 RHGYFGANCD TKCPRQFWGP DCKELCVCHP HGQCEDVTGQ CTCHARRWGA ENSBTAP00000025815/1-843 RHGYFGANCD TKCPRQFWGP DCKELCVCHP HGQCEDVTGQ CTCHARRWGA 401 450 ENSTTRP00000004398/1-862 RCEHACQCQH GACHPRSGAC RCEPGWWGPQ CASACYCSAT SRCDPQTGAC BACU017115/1-801 RCEHACQCQH GACHPRSGAC RCEPGWWGPQ CASACYCSAT ---------- ENSP00000266214/1-870 RCEHACQCQH GTCHPRSGAC RCEPGWWGAQ CASACYCSAT SRCDPQTGAC bmy_02462T0/1-855 RCEHACQCQH GACHPRSGAC RCEPGWWGPQ CASACYCSAT SRCDPQTGAC ENSBTAP00000025815/1-843 RCEHACQCQH GACHPRSGAC RCEPGWWGPQ CASACYCSAT SRCDPQTGAC 451 500 ENSTTRP00000004398/1-862 LCHAGWWGRS CNNQCACNTS PCEQQSGRCQ CRERTFGARC ERYCQCFRGR BACU017115/1-801 ---------- ---------- ---------- ---------- ---------- ENSP00000266214/1-870 LCHAGWWGRS CNNQCACNSS PCEQQSGRCQ CRERTFGARC DRYCQCFRGR bmy_02462T0/1-855 LCHAGWWGRS CNNQCACNTS PCEQQSGRCQ CRERTFGARC ERYCQCFRGR ENSBTAP00000025815/1-843 LCHAGWWGRS CNNQCACNTS PCEQQSGRCQ CRERTFGARC ERYCQCFRGR 501 550 ENSTTRP00000004398/1-862 CHPVDGTCAC EPGYRGKYCR EPCPAGFYGL GCRRRCGQCK GQQPCTVAEG BACU017115/1-801 ---------- ---------- ---------- -----CGQCK GQQPCTVAEG ENSP00000266214/1-870 CHPVDGTCAC EPGYRGKYCR EPCPAGFYGL GCRRRCGQCK GQQPCTVAEG bmy_02462T0/1-855 CHPVDGTCAC EPGYRGKYCR EPCPAGFYGL GCRRRCGQCK GQQPCTVAEG ENSBTAP00000025815/1-843 CHPVDGTCAC EPGYRGKYCR EPCPAGFYGL GCRRRCGQCK GQQPCTVAEG 551 600 ENSTTRP00000004398/1-862 RCLTCEPGWN GTKCDQPCAT GFYGEGCGHR CPPCRDGHAC NHVTGKCTRC BACU017115/1-801 RCLTCEPGWN GTKCDQPCAT GFYGEGCGHR CPPCRDGHAC NHVTGKCTRC ENSP00000266214/1-870 RCLTCEPGWN GTKCDQPCAT GFYGEGCSHR CPPCRDGHAC NHVTGKCTRC bmy_02462T0/1-855 RCLTCEPGWN GTKCDQPCAT GFYGEGCGHR CPPCRDGHAC NHVTGKCTRC ENSBTAP00000025815/1-843 RCLTCEPGWN GTKCDQPCAA GFYGEGCGRR CPPCRDGHAC NHVTGKCTRC 601 650 ENSTTRP00000004398/1-862 NAGWIGDRCE TKCSNGTYGE DCAFVCADCG SGHCDFQSGR CLCSPGVHGP BACU017115/1-801 NAGWIGDRCE TKCSNGTYGE DCAFVCADCG SGHCDFQSGR CLCSPGVHGP ENSP00000266214/1-870 NAGWIGDRCE TKCSNGTYGE DCAFVCADCG SGHCDFQSGR CLCSPGVHGP bmy_02462T0/1-855 NAGWIGDRCE TKCSNGTYGE DCAFVCADCG SGHCDFQSGR CLCSPGVHGP ENSBTAP00000025815/1-843 NAGWIGDRCE TKCSNGTYGE DCAFVCADCG SGHCDFQSGR CLCSPGVHGP 651 700 ENSTTRP00000004398/1-862 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX----- ---------- BACU017115/1-801 HCNLTCPPGL HGVDCAQACS CHEDSCDPVT GACRL----- ---------- ENSP00000266214/1-870 HCNVTCPPGL HGADCAQACS CHEDTCDPVT GACHL----- ---------- bmy_02462T0/1-855 HCNLTCPPGL HGVDCAQACS CHEDSCDPVT GACRLGEWVG ATRRGRGGCR ENSBTAP00000025815/1-843 HCNLTCPPGL HGVDCAQACS CHEDSCDPVT GACRL----- ---------- 701 750 ENSTTRP00000004398/1-862 ---------X XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXX- BACU017115/1-801 ---------E TNQRKGVMGA GALLALLLGL LLSLLGCCCA CRGKDPARG- ENSP00000266214/1-870 ---------E TNQRKGVMGA GALLVLLVCL LLSLLGCCCA CRGKDPTRR- bmy_02462T0/1-855 HLADPVTPTE TNQRKGVMGA GALLALLLGL LLSLLGCCCA CRGKDPARGR ENSBTAP00000025815/1-843 ---------E TNQRKGVMGA GALLALLLGL LLSLLGCCCA CRGKDPARG- 751 800 ENSTTRP00000004398/1-862 -------XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LRRQKLPKV- BACU017115/1-801 ---------- --ELSLGRKK APQRLCGRFS RISMKLPRIP LRRQKLPKVV ENSP00000266214/1-870 -------PRP RRELSLGRKK APHRLCGRFS RISMKLPRIP LRRQKLPKV- bmy_02462T0/1-855 GSAPSLRPRP RRELSLGRKK APQRLCGRFS RISMKLPRIP LRRQKLPKVV ENSBTAP00000025815/1-843 -------PRP RRELSLGRKK APQRLCGRFS RISMKLPRIP LRRQKLPKV- 801 850 ENSTTRP00000004398/1-862 ----VVAHHD LDNTLNCSFL EPPSGLEQPS PSWSSRASFS SFDTTDEGPV BACU017115/1-801 GKDDVVAHHD LDNTLNCSFL EPPSGLEQPS PSWSSRASFS SFDTTDEGPV ENSP00000266214/1-870 ----VVAHHD LDNTLNCSFL EPPSGLEQPS PSWSSRASFS SFDTTDEGPV bmy_02462T0/1-855 GKDDVVAHHD LDNTLNCSFL EPPSGLEQPS PSWSSRASFS SFDTTDEGPV ENSBTAP00000025815/1-843 ----VVAHHD LDNTLNCSFL EPPSGLEQPS PSWSSRASFS SFDTTDEGPV 851 900 ENSTTRP00000004398/1-862 YCVPHEEAAT ESRDCGGPTA PNEALAS--- -----SPAPV TTP--AEEAT BACU017115/1-801 YCVPHEE--- ---------- ---------- ---------- ------HEQS ENSP00000266214/1-870 YCVPHEEAPA ESRDPEVPTV PAEAPAP--- -----SPVPL TTPASAEEAI bmy_02462T0/1-855 YCVPHEEAAT ESRDAEAPTA PAPAPAPAPA EALASSPAPV TTP--AEEAT ENSBTAP00000025815/1-843 YCVPHEEAAA ESRDSEAPAA ---------- -------APV TTP--AEEAA 901 950 ENSTTRP00000004398/1-862 PLRASSDSER SASSGDGPGG ALYARVARRE ARPARVRGEA RGLSLSPSPE BACU017115/1-801 VLTHHLEI-- ---------G SICCPIE--- ---------- --LSLF---- ENSP00000266214/1-870 PLPASSDSER SASSVEGPGG ALYARVARRE ARPARARGEI GGLSLSPSPE bmy_02462T0/1-855 PLRASSDSER SASSGDGPGG ALYARVARRE ARPARVRGEA RGLSLSPSPE ENSBTAP00000025815/1-843 PLPPSSDSER SASSGDGPGG ALYARVARRE ARPARVRDEA RGLSLSPSPE 951 1000 ENSTTRP00000004398/1-862 RRKPPPPDPA TKPKVSWIHG KHG------A AAARAPSPPP AGPEAAPSPS BACU017115/1-801 ---------- ---------- ---------- ---------- ---------- ENSP00000266214/1-870 RRKPPPPDPA TKPKVSWIHG KHS-----AA AAGRAPSPPP PGSEAAPSPS bmy_02462T0/1-855 RRKPPPPDPA TKPKVSWIHG KHG------A AAARAPSPPP AGPEAAPSPS ENSBTAP00000025815/1-843 RRKPPPPDPA TKPKVSWIHG KQGAGAAAAA ATAPAPSPPP AGPEAAPSPS 1001 1050 ENSTTRP00000004398/1-862 KRKRTPSDTS ARPDEPCNPR ARDPTPRPPG LAEEGPALAA PSPPRARAR- BACU017115/1-801 ---------- ---------- ---------- VMEEGPETG- ---------- ENSP00000266214/1-870 KRKRTPSDKS AHTVEHGSPR TRDPTPRPPG LPEEATALAA PSPPRARAR- bmy_02462T0/1-855 KRKRTPSDTS ARPDEPCSPR ARDPTPRPPG LAEEGPALAA PSPPRARARG ENSBTAP00000025815/1-843 KRKRTPSDTS A--------- ------RPPG LAEEGPALGA PSPPRARARG 1051 1100 ENSTTRP00000004398/1-862 ---AVPWPLR AHGRWRSPAQ RTEAASMLAA ELRDKTRSLG RAEGAVGTQG BACU017115/1-801 -------PRD AGG------- ---------- ---------- ----TMGVDT ENSP00000266214/1-870 ---AAPRPLG AHGRRRSPAK RAEAASMLAA DVRGKTRSLG RAEVALGAQG bmy_02462T0/1-855 RGPGLSEPTD AGG---PPRS APEAASMLAA ELRDKTRSLG RAEGAVGTQG ENSBTAP00000025815/1-843 RGPGLPEPTD AGG---PPRS APEAASMLAA ELRDKTRSLG RAEGPAGMQG 1101 1150 ENSTTRP00000004398/1-862 PREKPAPPQK AKRSVPPASP VRAPPAPEAP GPEKAAAGAP GSDTPRKKTP BACU017115/1-801 WNHHRGTQKQ AR-------- ---------L DPAWSSVGLQ DLDVPDHY-- ENSP00000266214/1-870 PREKPAPPQK AKRSVPPASP ARAPPATETP GPEKAATDLP APETPRKKTP bmy_02462T0/1-855 PREKPAPPQK AKRSVPPASP ARAPPAPEAP GPEKAAAGAP GSDTPRKKTP ENSBTAP00000025815/1-843 PREKPAPPQK AKRSAPPSSP ARAPPAPEAL GPEKAAAGAP GSDTPRKKTP 1151 1200 ENSTTRP00000004398/1-862 IQKPPRKKSR EVAGEPGRAG APTL BACU017115/1-801 ---------- ---------- ---- ENSP00000266214/1-870 IQKPPRKKSR EAAGELGRAG APTL bmy_02462T0/1-855 IQKPPRKKSR EVAGEPGRVG APTL ENSBTAP00000025815/1-843 IQKPPRKKSR ELAGEPGRVG APTL