KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:23 2014 Check: 00 .. Name: ENSP00000279024/1-1200 Len: 1225 Check: 2486 Weight: 1.00 Name: ENSBTAP00000025819/1-1193 Len: 1225 Check: 573 Weight: 1.00 Name: ENSTTRP00000015897/1-1195 Len: 1225 Check: 3151 Weight: 1.00 Name: bmy_15748T0/1-1160 Len: 1225 Check: 2698 Weight: 1.00 Name: BACU015507/1-1210 Len: 1225 Check: 494 Weight: 1.00 // 1 50 ENSP00000279024/1-1200 ---------- ---------- ----MDPPSL DTAIQHALAG LYPPFEATAP ENSBTAP00000025819/1-1193 ---------- ---------- ----QDPPSL DAAIQHALAG LYPPFEATAP ENSTTRP00000015897/1-1195 ---------- ---------- ----MDPPSL DAAIQHALAG LYPPFEATAP bmy_15748T0/1-1160 ---------- ---------- ---------- ---IQHALAG LYPPFEATAP BACU015507/1-1210 MYHEKETRVE QGSEGWERAH PVWRGDPPSL DAAIQHALAG LYPPFEATAP 51 100 ENSP00000279024/1-1200 TVLGQVFRLL DSGFQGDGLS FLLDFLIPAK RLCEQVREAA CAPYSHCLFL ENSBTAP00000025819/1-1193 TILGQVFRLL DSDFRGDGLN FLLDFLIPAK RLCEQVREAA CAPYSHRLFL ENSTTRP00000015897/1-1195 TILGQVFRLL DSDFRGDGLN FLLDFLIPAK RLCEQVREAA CTPYSHHLFL bmy_15748T0/1-1160 TILGQVFRLL DSDFRGDGLN FLLDFLIPAK RLCEQVREAA CTPYSHHLFL BACU015507/1-1210 TILGQVFRLL DSDFRGDGLN FLLDFLIPAK RLCEQVREAA CTPYSHHLFL 101 150 ENSP00000279024/1-1200 HEGWPLCLRD EVVVHLAPLN PLLLRQGDFY LQVEPQEEQS VCIMIKCLSL ENSBTAP00000025819/1-1193 HEGWPLCLRD EVVVHLAPLN PLLLRQGDFY LQVEPREEQS VCLTIKCLSV ENSTTRP00000015897/1-1195 HEGWPLCLRD EVVVHLASLN PLLLRQGDFY LQVEPREEQS VCIMIKCLSV bmy_15748T0/1-1160 HEGWPLCLRD EVVVHLASLN PLLLRQGDFY LQVEPREEQS VCIMIKCLSV BACU015507/1-1210 HEGWPLCLRD EVVVHLASLN PLLLRQGDFY LQVEPREEQS VCIMIKCLSV 151 200 ENSP00000279024/1-1200 DLCTVDKKPV PEPAYPILFT QEWLEAINSD FEGNPLHNCL VASENGIAPV ENSBTAP00000025819/1-1193 DLRTVDTKPV PESSYPLLFT QAWLEAINSD SEGSPLHNCL VASEDGMAPV ENSTTRP00000015897/1-1195 DLHTVDTKPV PESSYPILFT QAWLEAINSD LEGSPLHNCL VASEDGIAPV bmy_15748T0/1-1160 DLHTVDTKPV PESSYPILFT QAWLEAINSD FEGSPLHNCL VASEGGIAPV BACU015507/1-1210 DLHTVDTKPV PESSYPILFT QAWLEAINSD FEGSPLHNCL VASEGGIAPV 201 250 ENSP00000279024/1-1200 PWTKITSPEF VDDRPQVVNA LCQAWGPLPL EALDLSSPQE LHQASSPDNQ ENSBTAP00000025819/1-1193 PWTKITSPEF VDDRPPAVHL LSPAWESLQL EALDLSSSQE LHQARCPDRQ ENSTTRP00000015897/1-1195 PWTKITSPEF VDDRPQAVNV LSPAWRSLQL EALDLNSPQE LHQARSPGSQ bmy_15748T0/1-1160 PWTKITSPEF VDDRPQAVNV LSPAWRSLQL EALDLSSPQE LHQARSPGSQ BACU015507/1-1210 PWTKITSPEF VDDRPQAVNV LSPAWRSLQL EALDLSSPQE LHQARSPGSQ 251 300 ENSP00000279024/1-1200 VLPAQSLAKG KGRTYGSKYP GLIKVEQARC GEVAFRMDEV VSQDFEGDYV ENSBTAP00000025819/1-1193 VLLVQSL--G KGRTHRNKYP GLIKVEQAGP GEVGFRVE-- ---DLEGEYV ENSTTRP00000015897/1-1195 VLLAQSLAKG KGRTHGDKYP GLIKVEQAGP GEVGFRVDEV ASQDLEGDYV bmy_15748T0/1-1160 VLLAQSLAKG KGRTHGDKYP GLIKVEQAGP GEVGFRMDEV ASQDLEGDYV BACU015507/1-1210 VLLAQSLAKD KGRTHGDKYP GLIKVEQAGP GQAGFRMDEV ASQDLEGDYV 301 350 ENSP00000279024/1-1200 ALLGFSQESR GESPSREAGT SSGCTSGALE EIAGTKETPL FQKILPLSEA ENSBTAP00000025819/1-1193 ALLDFSQESR EGSPSKEVAT PSGCPLGTPE ELSGTKEIPF SQRMLPLSGA ENSTTRP00000015897/1-1195 ALLDFSQENR GGSPSKEVET SSGFPFGAQE ELSGTKEIPF SQRILPLSGA bmy_15748T0/1-1160 ALLDFSQENR GGSPSKEVET SSGYPFGAQ- -----KEIPF FQRILPLSGA BACU015507/1-1210 SLLDFSQENR GGSPSKEVET SSGYPFGAQE E-----EIPF SQRILPLSGA 351 400 ENSP00000279024/1-1200 NEGPSLGNRA CTKPESSEER PYNLGFRRKV NLKAPTHNSE RPPQGSYMNV ENSBTAP00000025819/1-1193 NGEPSLEKWA CEKPESLGEK PCVWGLGRKA NDKVPTQDSE HQPREPYLSI ENSTTRP00000015897/1-1195 NGGPSLEKWT CEKPASSGEK PCVCDLRRKV NHKVPTQDSE HQPQEPYLSV bmy_15748T0/1-1160 NXGPSLEKWT CEKPASXGEK PCVWDLRRKV NHKVPTRDSE HQPQEPYLSV BACU015507/1-1210 NGGPSLEKWT CEKPASSGEK PCVWDLRRKV NHKVPTQDSE HQPQEPYLSV 401 450 ENSP00000279024/1-1200 LEDALDCASG LRAGVSQEPA ASKMQGPLGN PENMVQLRPG PRQASSPRLS ENSBTAP00000025819/1-1193 FVNPLHCASG LGTGGSEEPP ASKTQGIQGN SENVVQLKPG PKQAPSPRLC ENSTTRP00000015897/1-1195 LVNPLHGASG LGPGVSEESA PSKTQGPLGD SENIVQLNPG PKQASSARLR bmy_15748T0/1-1160 LVNPLHCASG LGPGVSEEPA PSETQRPLGD SENIVQFNPG PKQASSAQLR BACU015507/1-1210 LVNPLHCASG LGPGVSEEPS PSETQGPLGD SENIVQFSPG PKQASSARLR 451 500 ENSP00000279024/1-1200 PASP-AAAAS ETKIEVKTKE RNGRLPKPMP CPSRNTSSPE PPTPGLKFSF ENSBTAP00000025819/1-1193 PASPLAAPAS KTKMEERTKQ GNGRLAKPVT KAGRNTSSSG SPTPGLKFSF ENSTTRP00000015897/1-1195 PASPPASPAP ATKMEERTQQ ENGRLPKPVA RPCQNTS--- -PTPGLKFSF bmy_15748T0/1-1160 PASPPAPPAP ETKMEERTQQ ENGRLPKPVA RPXQNTS--- -PTPGLKFSF BACU015507/1-1210 PASPPAPPAP ETKMEERTQQ ENGRLPKPVA RPRQNTS--- -PTPGLKFSF 501 550 ENSP00000279024/1-1200 LRGQRQPSVT PEKASLQHNG PWKVLCSLYS PKPNRAKSLG KAGTTQTKTS ENSBTAP00000025819/1-1193 LKGQRQAPAA PEKASLQHDG PWKVLCSLYS PKPNRAKCLG KAGTTQTETS ENSTTRP00000015897/1-1195 LKRQRQGPVT QEKASFQHDG PWKVLCSLYS PKPNRDKCLG KXXXXXXXXX bmy_15748T0/1-1160 LKWQRQGPVT QEKASFQHDG PWKVLCSLYS PKPNRDKCLG KAGTTQTKTS BACU015507/1-1210 LKRQKQGPVT QEKASFQHDG PWKVLCSLYS PKPNRDKCLG KAGTTQTKTS 551 600 ENSP00000279024/1-1200 GPATAPSPLT EEKAALPEAS AGSPERGPTL EEEPPGPEPR IGALGVKVFR ENSBTAP00000025819/1-1193 GLDADSDPVT EEKADFPEAS AGPPEKSPAL DEDPPGLEPR IGALSVEIFH ENSTTRP00000015897/1-1195 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15748T0/1-1160 GPDADSDPLT EEKAGFPEAS XGPPEKGPTL NEEPPGPEPR FGALSMEIFH BACU015507/1-1210 GPDADSDPLT EEKAGFPEAS AGPPEKGPTL NEEPPGPEPR FGALSMEIFH 601 650 ENSP00000279024/1-1200 SRIACLPGGR DRAGRPLLLV STTEGAWEAP WCTVSEVTKL LSYLCTIPRP ENSBTAP00000025819/1-1193 SRIACLPGGR DRAGRPLLLV STTKGPWEAP WCTASEVTKL FSYLCTIPRP ENSTTRP00000015897/1-1195 XXXXXXXXGR DRAGRPLLLV STTKGPWEAP WCTASEVTKL FSYLCTIPRP bmy_15748T0/1-1160 SRIACLPGPQ G-----LALV HPARPPI--- ---------- ---LFTTHRP BACU015507/1-1210 SRIACLPGVV C-----ALYL STSSPLILSS THSNQSISST LTLEQVFSRP 651 700 ENSP00000279024/1-1200 EDKAKGLAVL IDARRQPPQP GLVSALQATQ AQVPASIRAI LFLGEKEAAL ENSBTAP00000025819/1-1193 EDKTKGLAVV IDARKQPPHP GLVSALQATQ ALVPASIRAM LFLGEKEAAL ENSTTRP00000015897/1-1195 EDKTKGLAVV IDARKQPPHP GLVSALQATQ TLVPTSIRAV LFLGEQEAAL bmy_15748T0/1-1160 EDKTKGLAVV IDARKQPPHP GLVSALQATQ ALVPTSIRAM FVLGEQEAAL BACU015507/1-1210 EDKTKGLAVV IDARKQPPHP GLVSALQATQ ALVPTSIRAM LFLGEQEAAL 701 750 ENSP00000279024/1-1200 QLQTLPDVQV EVLTSLKALS HHVDPSQLPA VLEGPFPYCH TEWVHFFQKL ENSBTAP00000025819/1-1193 QLEALPDIQV EVLTSLKALS HHVDPSQLPT ALEGPFPYCH GEWVQFFQKL ENSTTRP00000015897/1-1195 QLEA-SDIQV EVLTSLKALS RHVDPSQLPM ALEGPFPYCH GEWVQFFQKL bmy_15748T0/1-1160 QLEALSDIQV EVLTSLKALS HHVDPSQLPM ALEGPFPYCH GEWVQFFQKL BACU015507/1-1210 QLEALSDIQV EVLTSLKALS HHVDPSQLPM ALEGPFPYCH GEWVQFFQKL 751 800 ENSP00000279024/1-1200 DPFLADLHQA SSLLQASIEE FEKADPPGGM QEATRCLSKS KELMEAVLRD ENSBTAP00000025819/1-1193 DPFLVDLRQA SCLLKASIKE FEKGEPPGGV QEASRCLSKS KELMEAVLRD ENSTTRP00000015897/1-1195 DPFLADLRQA SSLLKASIKE FEKGDPPGGV QEASRCLSKS KELMEAVLRD bmy_15748T0/1-1160 DPFLADLRQA SSLLKASIKE FEKGDPPGGV QEASRCLSKS KELMEAVLRD BACU015507/1-1210 DPFLADLRQA SSLLKASIKE FEKGDPPGGV QEASRCLSKS KELMEAVLRD 801 850 ENSP00000279024/1-1200 PGLLGLQREG GATLARLQHD ASRLDFSPDV RSHLAAATAL YSLVDEQLHV ENSBTAP00000025819/1-1193 PGLMSLQREG GATLARLRQE GSRLNFNPDV RSHLAEAAAL YSLVDEQLHV ENSTTRP00000015897/1-1195 PGLLGLQREG GATLARLRQE GSRLNFNPDI RSHLAEAAAL YSLVDEQLHV bmy_15748T0/1-1160 PGLLGLQREG GATLARLRQE GSRLNFNPDV RSHLAEAAAL YSLVDEQLHV BACU015507/1-1210 PGLLGLQREG GATLARLRQE GSRLNFNPDV RSHLAEAAAL YSHVDEQLHV 851 900 ENSP00000279024/1-1200 LVTASNSLLG KLELRVRLGR LEAAIHQVSD WMEQEGRRCL QSLTPKDGSL ENSBTAP00000025819/1-1193 LATVSNHLLR RLELRVRLGR LEAAIHQVSH WMEQEGSRCL QVLTPKDGSL ENSTTRP00000015897/1-1195 LVTVSNHLLR RLELRVRLGR LEAAIHQVSN WMEQEGSQCL QVLTPKDGSL bmy_15748T0/1-1160 LVTVSNHLLR RLELRVHLGR LEAAIHQVSN WMEQEGSQWL QVLTPKDGSL BACU015507/1-1210 LVTVSNHLLR RLELRVHLGR LEAAIHQVSN WMEQEGSQCL QVLTPKDGSL 901 950 ENSP00000279024/1-1200 ETVEKAHAEF ENFFLQAAAQ YRRGLELSKQ AAQLGATARG AGEAERAEFP ENSBTAP00000025819/1-1193 DTVEKAHAEF EDFFLQAAAQ YRRGLELCKQ AAQLAAAAR- AGEAGGTELP ENSTTRP00000015897/1-1195 ETVEKAHAEF EDFFLQAAAQ YRRGLELCKQ AAQLGAAAR- AREAGGTELP bmy_15748T0/1-1160 ETVEKAHAEF EDFFLQAAAQ YRRGLELCKQ AAQLGAAAR- AREAGGTELP BACU015507/1-1210 ETVEKAHAEF EDFFLQAAAQ YRRGLELCKQ AAQLGAAAR- AREAGGTELP 951 1000 ENSP00000279024/1-1200 ELAAFASTQR AFQAELTHFY MAAERQRTDL ETLLHLHRFC KRMTWFHMDC ENSBTAP00000025819/1-1193 ELAAFAFTQR AFQAKLTHFY MAAERQRTDL ETLLHLHHFC KKVTWFHMDC ENSTTRP00000015897/1-1195 ELAGFTFTQR AFQAKLTHFY MAAERQRTDL ETLLHLHHFC KKMTWFHMDC bmy_15748T0/1-1160 ELAGFTFTQR AFQAKLTHFY MAAERQRTDL ETLLHLHHFC KKMTWFHMDC BACU015507/1-1210 ELAGFTFTQR AFQAKLTHFY MAAERQRTDL ETLLHLHHFC KKMTWFHMDC 1001 1050 ENSP00000279024/1-1200 QDLMAQLRLD KTSRVSPGDQ RRLHRYLQRL ASEFPAEKLA AVGLQVASLS ENSBTAP00000025819/1-1193 QDLMAQLRLG KAQRTSPGDQ RRLHRYLQRL ASEFPAEKLT AMGLQVASLS ENSTTRP00000015897/1-1195 QDLMAQLRLG KAQRASPGDQ RRLHRYLQRL ASEFPAEKLT AMRLQVASLS bmy_15748T0/1-1160 QDLMAQLRLG KAQRASPGDQ RRLHRYLQRL ASEFPAEKLT AMRLQVASLS BACU015507/1-1210 QDLMAQLRLG KAQRASPGDQ RRLHRYLQRL ASEFPAEKLT AMRLQVASLS 1051 1100 ENSP00000279024/1-1200 RAGLGQELWE EARIRHEEIR MLLEKALTHS SCPEAPAAHS ARPERRGVAA ENSBTAP00000025819/1-1193 REGLGRDLWE EAQARHEDIQ MLLKKALAHC PCPAGSPAHP TCPELRGAAA ENSTTRP00000015897/1-1195 WEGLGQDLWE EARERHEEIQ TLLKKALGHC PCLTGPPSHP AGRELRGAAA bmy_15748T0/1-1160 WEGLGQDLWE EARERHEEIQ TLLKKALAHC PCPAGPPSHL AGRELRGAAA BACU015507/1-1210 WEALGQDLWE EARERHEEIQ TLLKKALAHC PCPAGPPSHP AGRELRGAAA 1101 1150 ENSP00000279024/1-1200 KGQGVSVEVT SKGRWDQPPL DSLGMDHLPK SYWPPGPPRG EQNRTFQAGS ENSBTAP00000025819/1-1193 KDQGLNGEVT SKGRWDLPLQ DSLGSDRSPK SRWPPWAPRR GQNRNLQAAP ENSTTRP00000015897/1-1195 KGQDLNGEVT YKGRWDLPLQ DSLGLDRSPK SCWPPRAPRR VQNRSFQAAP bmy_15748T0/1-1160 KGQGLNGEVT YKGRRDLPLQ DSLGLDRSPK SCWPPWAPRR VQNRNFQAAP BACU015507/1-1210 KGQGLNGEVT YKGRRDLPLQ DSLGLDRSPK SCWPPWAPRR VQNRNFQAAR 1151 1200 ENSP00000279024/1-1200 PPQEAGQAAE AEDGKGSHKL PDPAREHLLA TTFFRQQPPR QSQVPRLTGG ENSBTAP00000025819/1-1193 PTQEAGQAVE ADEGRTPHGP LDPAPERFLT TLFSWQRLPR QTQISQPAGD ENSTTRP00000015897/1-1195 PPQEAGQAFE ADDGRSPHGP LDPASERYLT TFLSWQRLPR QSQIPRPTGG bmy_15748T0/1-1160 PPQEAGQAFE ADEGRSPHGP LDPAPERFLA TLFSWQXLPR QSQIPXPTGG BACU015507/1-1210 PPQEAGQAFE ADEGRSPHGP LDPAPERFLA TLFSWQRLPR QSQIPRPTGG 1201 1250 ENSP00000279024/1-1200 SFSSEGTDSQ TSLEDSPQTS PLASL ENSBTAP00000025819/1-1193 SFSSEGTGSQ TSLEDSPHTS PPASL ENSTTRP00000015897/1-1195 SFSSEGTDSQ TSLEDSPHTS PPASL bmy_15748T0/1-1160 SFSSEGTDSQ TSLEDSPHTS PPASL BACU015507/1-1210 SFSSEGTDSQ TSLEDSPHTS PPASL