KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:27:24 2014 Check: 00 .. Name: ENSP00000365756/1-634 Len: 648 Check: 378 Weight: 1.00 Name: ENSBTAP00000025834/1-634 Len: 648 Check: 271 Weight: 1.00 Name: bmy_12771T0/1-523 Len: 648 Check: 1187 Weight: 1.00 Name: ENSTTRP00000003278/1-565 Len: 648 Check: 1481 Weight: 1.00 // 1 50 ENSP00000365756/1-634 MWLQQRLKGL PGLLSSSWAR RLLCLLGLLL LLLWFGGSGA RRAAGGLHLL ENSBTAP00000025834/1-634 MWLQQRLKGL PGLLSSSWAR RLLCLLGLLV LLLWFAGSGA RRAAGGLQLL bmy_12771T0/1-523 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003278/1-565 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000365756/1-634 PWSRGEPGAA EPSACLEAAT RAWRGLRERG EVVPLGPGVP ALVANGFLAL ENSBTAP00000025834/1-634 PWPHGEPGAA EPSACLEAAT HAWRSLRERG EAVLLGPGVP SLVANGFLAL bmy_12771T0/1-523 ---------- ---------- ---------- ---------M KLLFN----- ENSTTRP00000003278/1-565 ---------- ---------- ---------- ---PLGPGVP TLVANGFLAL 101 150 ENSP00000365756/1-634 DVAANRLWVT PGEREPAVAP DFVPFVQLRP LSALAEAGEA VLLLREGLLR ENSBTAP00000025834/1-634 DVVANRLWVT PGEWEPAVAP DFVPFVQLRP LSALPEAGES VLFMLEGLLR bmy_12771T0/1-523 ---------- ---REPAVAP DFVPFVQLRP LSALSEAGES VLLLREGLLR ENSTTRP00000003278/1-565 DVVANRLWVT PGEREPAVAP DFVPFVQLRP LSALSEAGES VLLLREGLLR 151 200 ENSP00000365756/1-634 RVRCLQLGSP GPGPVAAGPG PASVSGLAAG SGRDCVLLQE DFLAHRGRPH ENSBTAP00000025834/1-634 RVRCLQLGTS GPGPAAAGPG PASASGLLTG SGRDCVLLQE DFLAHRGRPH bmy_12771T0/1-523 RVRCLQLGTP GPGPAAAGPG PASASGLVTG SGRDCVLLQE DFLAHRGRPH ENSTTRP00000003278/1-565 RVRCLQLGTP GPGPAAAGPG PASASGLVTG SGRDCVLLQE DFLAHRGRPH 201 250 ENSP00000365756/1-634 VYLQRIQLNN PTERVAALQT VGPTAGPAPK AFTSTLEKVG DHQFLLYSGR ENSBTAP00000025834/1-634 VYLQRIQLNN PTERVAALQT VGPTAGPAPR AFTSTLEKVG DHQFLLYSGR bmy_12771T0/1-523 VYLQRIQLNN PTERVAALQT VGPTAGPVPK AFTSTLEKVG DHQFLLYSGR ENSTTRP00000003278/1-565 VYLQRIQLNN PTERVAALQT VGPTAGPVPK AFTSTLEKVG DHQFLLYSGR 251 300 ENSP00000365756/1-634 SPPTPTGLVH LVVVAAKKLV NRLQVAPKTQ LDETVLWVVH VSGPINPQVL ENSBTAP00000025834/1-634 SPPVPTGLVH LVVVAAKKLV DRLQVAPRTQ LDETVLWVVH VSGPLNPQVL bmy_12771T0/1-523 SPPFPTGLVH LLVVAAKKLV NRLQVAPKTQ LDETVLWVVH VSGPLNPQVL ENSTTRP00000003278/1-565 SPPFPTGLVH LLVVAAKKLV NRLQVAPKTQ LDETVLWVVH VSGPLNPQVL 301 350 ENSP00000365756/1-634 KSKAAKELKA LQDLARKEML ELLDMPAAEL LQDHQLLWAQ LFSPGVEMKK ENSBTAP00000025834/1-634 KSKAAKELKV LQDLARKEML ELLEMPAAEL LQDHQRLWAQ LFSPGVEMKK bmy_12771T0/1-523 KSKAGKELKV LQDLARKEML ELLEMPAAEL LQDHQRLWAQ LFSPGVEMKK ENSTTRP00000003278/1-565 KSKAGKELKV LQDLARKEML ELLEMPAAEL LQDHQRLWAQ LFSPGVEMKK 351 400 ENSP00000365756/1-634 ITDTHTPSGL TVNLTLYYML SCSPAPLLSP SLSHRERDQM ESTLNYEDHC ENSBTAP00000025834/1-634 ITDAHTPSGL TVNLTLYYML SCSPAPLLSP DLSHRERDQM ESTLNYEDHC bmy_12771T0/1-523 ITDAHTPSGL TVNLTLYYML SCSPAPLLSP DLSHRERDQM ESTLNYEDHC ENSTTRP00000003278/1-565 ITDAHTPSGL TVNLTLYYML SCSPAPLLSP DLSHRERDQM ESTLNYEDHC 401 450 ENSP00000365756/1-634 FSGHATMHAE NLWPGRLSSV QQILQLSDLW RLTLQKRGCK GLVKVGAPGI ENSBTAP00000025834/1-634 FSGHATMHAE NLWPGRLSSV QQILQLWDLW RLTLQKRGCK GLVRAGAPGI bmy_12771T0/1-523 FSGHATMHAG NLWPGRLSSI QQILQLWDLW RLTLQKRGCK GLVRAGAPGI ENSTTRP00000003278/1-565 FSGHATMHAG NLWPGRLSSI QQILQLWDLW RLTLQKRGCK GLVRAGAPGI 451 500 ENSP00000365756/1-634 LQGMVLSFGG LQFTENHLQF QADPDVLHNS YALHGIRYKN DHINLAVLAD ENSBTAP00000025834/1-634 LQGMVLSFGG LQFTENHLQF QADPDVLHNS YALHGIRYKN DHINLAVLAD bmy_12771T0/1-523 LQGMVLSFGG LQFTENHLQF QADPDVLHNS YALHGIRYKN DHINLAVLAD ENSTTRP00000003278/1-565 LQGMVLSFGG LQFTENHLQF QADPDVLHNS YALHGIRYKN DHINLAVLAD 501 550 ENSP00000365756/1-634 AEGKPYLHVS VESRGQPVKI YACKAGCLDE PVELTSAPTG HTFSVMVTQP ENSBTAP00000025834/1-634 AEGKPYLHVS VESRGQLVKI YACEAGCLDE PVELTSAPQG HTFSVMVTQP bmy_12771T0/1-523 PEGKPYLHVS VESRGQLVKI YACEAGCLDE PVELTSAPQG HTFSVMVTQP ENSTTRP00000003278/1-565 PEGKPYLHVS VESRGQLVKI YACEAGCLDE PVELTSAPQG HTFSVMVTQP 551 600 ENSP00000365756/1-634 ITPLLYISTD LTHLQDLRHT LHLKAILAHD EHMAQQDPGL PFLFWFSVAS ENSBTAP00000025834/1-634 ITPLLYISTD LTHLQDLRHT LHLKAILAHD EHMAQQDPGL PFLFWFSVAS bmy_12771T0/1-523 ITPLLYISTD LTHLQDLRHT LHLKAILAHD EHMAQQDPGL PFLFWFSVAS ENSTTRP00000003278/1-565 ITPLLYISTD LTHLQDLRHT LHLKAILAHD EHMAQQDPGL PFLFWFSVAS 601 650 ENSP00000365756/1-634 LITLFHLFLF KLIYNEYCGP GAKPLFRSKE DPSV------ -------- ENSBTAP00000025834/1-634 LITLFHLFLF KLIYNEYCGP GAKPFFRNKE DPSV------ -------- bmy_12771T0/1-523 LITLFHLFLF KLIYNEYCGP GAKPLFRSKV ---------- -------- ENSTTRP00000003278/1-565 LITLFHLFLF KLIYNEYCGP GAKPLFRSKV SHCASRARGP GLAFCPES