KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:25 2014 Check: 00 .. Name: ENSP00000315371/1-913 Len: 1063 Check: 245 Weight: 1.00 Name: ENSBTAP00000025843/1-906 Len: 1063 Check: 2417 Weight: 1.00 Name: ENSTTRP00000002366/1-912 Len: 1063 Check: 3069 Weight: 1.00 Name: bmy_11042T0/1-788 Len: 1063 Check: 571 Weight: 1.00 Name: BACU005590/1-995 Len: 1063 Check: 8656 Weight: 1.00 // 1 50 ENSP00000315371/1-913 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025843/1-906 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002366/1-912 ---------- ---------- ---------- ---------- ---------- bmy_11042T0/1-788 MEAPVEDLGR SRERRGESAQ ADSKEAPPES QRRQGSWKPG DQQAGTFRET BACU005590/1-995 MEAPVEDLGR SRVRRGESAQ ADSKEAPPGS QRRQGSWKPG DQQPGTLRET 51 100 ENSP00000315371/1-913 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025843/1-906 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002366/1-912 ---------- ---------- ---------- ---------- ---------- bmy_11042T0/1-788 YWERSQERYR ERAVKPRVKG QVEWKYPLEK KPSWLKPPTL VEPEENEVYK BACU005590/1-995 YWERSQERYR ERAVKPRVKG QVEWKYPLGK KPSWLKPATL VEPEENEVYK 101 150 ENSP00000315371/1-913 ---------- ---------- ---------- ---------- ----MGDPDL ENSBTAP00000025843/1-906 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002366/1-912 ---------- ---------- ---------- ---------- ----MGDPNV bmy_11042T0/1-788 EDLLIPAQVR RPTIRFSLQA RSRLQSQGSA VCCPSSSVIN ELAKMGDPDV BACU005590/1-995 EDLLIPAQVR RPTIRFSLQA RSRLQSRRSA VCCPSSSVIN ELAKMGDPDV 151 200 ENSP00000315371/1-913 LEVLAEEGEK VNKHI---DY SFQMSEQSLS SRETSFLINE ETMPAKRFNL ENSBTAP00000025843/1-906 -----KEERY SKANEILCPF -FQLDCLAFL LLKSSFLICQ EPRSAKRFNL ENSTTRP00000002366/1-912 LEMVQEEERR ASRGE---RF -FEVSEQDLN SRESSFLISE EPRSAKRYNL bmy_11042T0/1-788 LEMVQEEERR AGSEE---RF -FEVSEQDLS SRESSFLISE EPR------- BACU005590/1-995 LEMVQEEERR AGSEE---RF -FEVNE---- ---------- ---------- 201 250 ENSP00000315371/1-913 FLRRRLMFQK NQQSKDSIFF RDGIRQIDFV LSYVDDVKKD AELKAERRKE ENSBTAP00000025843/1-906 FLRRRLLFKK DEQSKDSIFF RDGIRKIDFV LSYVDDIKKE AELKAERRRQ ENSTTRP00000002366/1-912 FLRRRLMFKK DEQSKDSIFF RDGIRQIDFV LSYVDDLKKE AELKAERRKE bmy_11042T0/1-788 -------FKK DEQSKDSIFF RDGIRQIDFV LSYVDDIKKE AELKA----- BACU005590/1-995 -------FKK DEQSKDSIFF RDGIRQIDFV LSYVDDIKKE AELKAERRKE 251 300 ENSP00000315371/1-913 FETNLRKTGL ELEIEDKRDS EDGRTYFVKI HAPWEVLVTY AEVLGIKMPI ENSBTAP00000025843/1-906 FEQNLRKTGL ELEIEDKMNS EDGRTYFVKI HAPWEVLVTY AEVLGIKMPV ENSTTRP00000002366/1-912 FEQNLRKTGL ELEIEDKMNS EDGKTYFVKI HAPWEVLVTY AEVLGIKMPI bmy_11042T0/1-788 ---------- ---------- ---------- ---------- ---------- BACU005590/1-995 FEQNLRKTGL ELEIEDKMNS EDGKTYFVKI HAPWEVLVTY AEVLGIKMPI 301 350 ENSP00000315371/1-913 KESDIPRPKH TPISYVLGPV RLPLSVKYPH PEYFTAQFSR HRQELFLIED ENSBTAP00000025843/1-906 KESDIPSADR LPFSCMLEPL KLPRDVKHPT PDYFTVQFSR HRQELFLIKD ENSTTRP00000002366/1-912 KESDIPRADK IPFSCMLGPL KLPRNVKHPH AEYFTAQFTR HRQELFLIED bmy_11042T0/1-788 ---------- ---------- ---------- ---------- ---------- BACU005590/1-995 KESDIPRADK IPFSCMLGPL KLPRNVKHPH AEYFTAQFTR HRQELFLIED 351 400 ENSP00000315371/1-913 QATFFPSSSR NRIVYYILSR CPFGIEDGKK RFGIERLLNS NTYSSAYPLH ENSBTAP00000025843/1-906 ESSFFPSSSR NRIVYYILSR CPFGMEDGKK RFGIERLLNS HTYSSAFPLH ENSTTRP00000002366/1-912 ESSFFPSSSR NRIVYYILSR CPFGIEDGKK RFGIERLLNS HTYSSAFPLH bmy_11042T0/1-788 ---------- ---VYYILSR CPFGIEDGKK RFGIERLLNS HTYSSAFPLH BACU005590/1-995 ESSFFPSSSR NRIVYYILSR CPFGIEDGKK RFGIERLLNS HTYSSAFPLH 401 450 ENSP00000315371/1-913 DGQYWKPSEP PNPTNERYTL HQNWARFSYF YKEQPLDLIK NYYGEKIGIY ENSBTAP00000025843/1-906 DGQYWKASEP PNPVNQRNIL YRNWARFSYF YKEQPFNLIR DYYGEKIGIY ENSTTRP00000002366/1-912 DGQYWKPSEP PNPVNERYTL CQNWARFSYF YKEQPFNLIR DYYGEKIGIY bmy_11042T0/1-788 DGQYWKPSEP PNPVNERYTL CQNWARFSYF YKEQPFNLIR DYYGEKIGIY BACU005590/1-995 DGQYWKPSEP PNPVNERYTL CQNWARFSYF YKEQPFNLIR DYYGEKIGIY 451 500 ENSP00000315371/1-913 FVFLGFYTEM LFFAAVVGLA CFIYGLLSME HNTSSTEICD PEIGGQMIMC ENSBTAP00000025843/1-906 FVFLGFYTEM LFFAAVIGLA CFIYGLLTIP KTSGSSEICD PKIGGQIIMC ENSTTRP00000002366/1-912 FVFLGFYTEM LFFAAIVGLA CFIYGLLSMH DNSSSTEICD PEIGGQIIMC bmy_11042T0/1-788 FVFLGFYTEM LFFAAIVGLA CFIYGLLSMH DNSSSS---- ---------- BACU005590/1-995 FVFLGFYTEM LFFAAIVGLA CFIYGLLSMH DNSSSTEICD PEIGGQIIMC 501 550 ENSP00000315371/1-913 PLCDQVCDYW RLNSTCLASK FSHLFDNEST VFFAIFMGIW VTLFLEFWKQ ENSBTAP00000025843/1-906 PLCDELCDYW RLNSTCLASK ISHLFDNEST VFFAIFMGIW VTLFLEFWKR ENSTTRP00000002366/1-912 PLCDVMCDYW RLNSTCWASK FSHLFDNEST VFFAIFMGIW VTLFLEFWKQ bmy_11042T0/1-788 -LCDVV---- ------IVLQ FSHLFDNEST VFFAIFMGIW VTLFLEFWKQ BACU005590/1-995 PLCDVMCDYW RLNSTCLASK FSHLFDNEST VFFAIFMGIW VTLFLEFWKQ 551 600 ENSP00000315371/1-913 RQARLEYEWD LVDFEEEQQQ LQLRPEFEAM CKHRKLNAVT KEMEPYMPLY ENSBTAP00000025843/1-906 RQARLEYEWD LVDFEEEQQQ LQLRPEFEAM CTKRKLNAVT QEMEPYLPLC ENSTTRP00000002366/1-912 RQARLEYEWD LVDFEEEQQQ LQLRPEFEAM CTHRKVNAVT KEVEPYLPLC bmy_11042T0/1-788 RQARLEYEWD LVDFEEEQQQ LQLRPEFEAM CTHRKLNAVT KEMEPYLPLC BACU005590/1-995 RQARLEYEWD LVDFEEEQQQ LQLRPEFEAM CTHRKINAVT KEMEPYLPLC 601 650 ENSP00000315371/1-913 TRIPWYFLSG ATVTLWMSLV VTSMVAVIVY RLSVFATFAS FMESDASLKQ ENSBTAP00000025843/1-906 SRLPWYILSG VTVTLWMALV VACMVAVIVY RLSVFATFAS FMESEASLKH ENSTTRP00000002366/1-912 SRIPWYFLSG ATVTLWMSLV IACMVAVIVY RLSVFATFAS FMETEASLKH bmy_11042T0/1-788 SRIPWYFLSG ATVTLWMSLV IACMVAVIVY RLSVFATFAS FMESEASLKH BACU005590/1-995 SRIPWYFLSG ATVTLWMSLV IACMVAVIVY RLSVFATFAS FMESEASLKH 651 700 ENSP00000315371/1-913 VKSFLTPQIT TSLTGSCLNF IVILILNFFY EKISAWITKM EIPRTYQEYE ENSBTAP00000025843/1-906 VKSFLTPQIT TSLSGSCLNF IVILILNFFY EKISAWITKM EIPRTHQEYE ENSTTRP00000002366/1-912 VRSFLTPHIT TSLTGSCLNF IVILILNFFY ERISAWITKM EIPRTHQEYE bmy_11042T0/1-788 VRSFLTPQIT TSLTGSCLNF IVILILNFFY ERISAWITKM EIPRTHQEYE BACU005590/1-995 VRSFLTPQIT TSLTGSCLNF IVILILNFFY ERISAWITKM EIPRTHQEYE 701 750 ENSP00000315371/1-913 SSLTLKMFLF QFVNFYSSCF YVAFFKGKFV GYPGKYTYLF NEWRSEECDP ENSBTAP00000025843/1-906 SSLTLKMFLF QFVNYYSSCF YVAFFKGKFV GYPGKYTYLF GVWRSEECDP ENSTTRP00000002366/1-912 SSLTLKMFLF QFVNFYSSCF YVAFFKGKFV GYPGKYTYLF NVWRSEECDP bmy_11042T0/1-788 SSLTLKMFLF QFVNFYSSCF YVAFFKGKFV GYPGKYTYLF NVWRSEECDP BACU005590/1-995 SSLTLKMFLF QFVNFYSSCF YVAFFKGKFV GYPGKYTYLF NVWRSEECDP 751 800 ENSP00000315371/1-913 GGCLIELTTQ LTIIMTGKQI FGNIKEAIYP LALNWWRRRK ARTNSEKLYS ENSBTAP00000025843/1-906 AGCLVELTTQ LTIIMTGKQI FGNIKEAIYP LVLNWWRRRK ARTNSEKLYS ENSTTRP00000002366/1-912 GGCLVELTTQ LTIIMTGKQI FGNIKEAIYP LVLNWWRRRK ARTNSEKLYS bmy_11042T0/1-788 GGCLVELTTQ LTIIMTGKQV FGNIKEAIYP Y--------- ---------- BACU005590/1-995 GGCLVELTTQ LTIIMTGKQV FGNIKEAIYP FVLNWWRRRK ARTNSEKLYS 801 850 ENSP00000315371/1-913 RWEQDHDLES FGPLGLFYEY LETVTQFGFV TLFVASFPLA PLLALINNIV ENSBTAP00000025843/1-906 RWEQDHDLET FGSLELFYEY LETVIQFGFV TLFVASFPLA PLLALLNNII ENSTTRP00000002366/1-912 RWEQDHDLET FGSLGLFYEY LETVIQFGFV TLFVASFPLA PLLALLNNII bmy_11042T0/1-788 ---------- ---------- ---------- ---------- ---------- BACU005590/1-995 RWEQDHDLET FGSLGLFYEY LETVIQFGFV TLFVASFPLA PLLALLNNII 851 900 ENSP00000315371/1-913 EIRVDAWKLT TQYRRTVASK AHSIGVWQDI LYGMAVLSVA TNAFIVAFTS ENSBTAP00000025843/1-906 EIRVDAWKLT TQYRRPVAAK AHSIGVWQDI LYGMAVLSVA TNAVIVAFTS ENSTTRP00000002366/1-912 EIRVDAWKLT TQYRRPVAAK AHSIGVWQDI LYGMAVLSVA TNAFIVAFTS bmy_11042T0/1-788 ---------- ---------- ---------- ---------- --AFIVAFTS BACU005590/1-995 EIRVDAWKLT TQYRRPVAAK AHSIGVWQDI LYGMAVLSVA TNAFIVAFTS 901 950 ENSP00000315371/1-913 DIIPRLVYYY AYSTNATQPM TGYVNNSLSV FLIADFPNHT APSEKRDFIT ENSBTAP00000025843/1-906 DMVPRLVYHY AYSVNESWPM SGYINNSLSV FLIADFPNNT VPSE-RDYNT ENSTTRP00000002366/1-912 DMIPRLVYYY AYSKNAIQPM KGYVNNSLSI FLIADFPNHT VPSEKRDFTT bmy_11042T0/1-788 DMIPRLVYYY AYSKNAIQPM KGYVNNSLSI FLIADFPNHT VPSEKRDFTT BACU005590/1-995 DMIPRLVYYY AYSKNAIQPM RG-------- ---------- ---------- 951 1000 ENSP00000315371/1-913 CRYRDYRYPP DDENKYFHNM QFWHVLAAKM TFIIVMEHVV FLVKFLLAWM ENSBTAP00000025843/1-906 CRYRDYRNPP DSEDKYAHNI QFWHVLAAKM TFIIIMEHVV FLIKFFLAWM ENSTTRP00000002366/1-912 CRYRDYRNPP DHEEKYFHSM QYWHVLAAKM TFIIIMEHVV FLMKFLLAWM bmy_11042T0/1-788 CRYRDYRNPP DHEEKYFHSM QYWHVLAAKM TFIIIMEHVV FLMKFLLAWM BACU005590/1-995 --YRDYRNPP DHEDKYFHSM QYWHVLAAKM TFIIIMEHVV FLMKFLLAWM 1001 1050 ENSP00000315371/1-913 IPDVPKDVVE RIKREKLMTI KILHDFELNK LKENLGIN-- -SNEFAKHVM ENSBTAP00000025843/1-906 IPDVPKDVLE RVKREKLMTV KILHDFELNK LKENLRLNSA SSTDFAKHFT ENSTTRP00000002366/1-912 IPDVPKDVAE RIKREKLMTV KILHDFELNK LKENLRMN-- -SSDFAKHLI bmy_11042T0/1-788 IPDVPKDVME RIKREKLMTV KILHDFELNK LKENLRMN-- -SSDFAKHLI BACU005590/1-995 IPDVPKDVVE RIKREKLMTV KILHDFELNK LKENLRMN-- -SSDFAKHLI 1051 1100 ENSP00000315371/1-913 IEENKAQLAK STL ENSBTAP00000025843/1-906 IKENQANLAE STP ENSTTRP00000002366/1-912 IQENKVQLAK SAT bmy_11042T0/1-788 IQENQVHLAK SAT BACU005590/1-995 IQENKVHLAK SAT