KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:26 2014 Check: 00 .. Name: ENSP00000344749/1-611 Len: 643 Check: 3760 Weight: 1.00 Name: ENSBTAP00000025850/1-623 Len: 643 Check: 2487 Weight: 1.00 Name: ENSTTRP00000008071/1-604 Len: 643 Check: 6091 Weight: 1.00 Name: bmy_22543T0/1-338 Len: 643 Check: 8239 Weight: 1.00 Name: BACU009858/1-593 Len: 643 Check: 3700 Weight: 1.00 // 1 50 ENSP00000344749/1-611 MSEIPSTIVS KNMTNDKNSL ESMNISSSSS TEENPKKQAR -KNEEHGPDP ENSBTAP00000025850/1-623 MSENLPPMVS KSVTFNKHGP EPTDNSASGS -EEKKKHAKN GKASKNVPDQ ENSTTRP00000008071/1-604 MSKVLPPLVS KGISFNKKSP ESVDNSSSSV IEEKKKHGEK TKGSAIVPDQ bmy_22543T0/1-338 ---------- ---------- ---------- ---------- ---SAIVPDQ BACU009858/1-593 MSKVLPPVVS KGISFNKQSL ESMDNSSSSV IEEKKKHAKK TKGSAIVPDQ 51 100 ENSP00000344749/1-611 SANPFHLSGD VDFFLLRDQE RNKALSERQQ QKTMR-VHQK MTYSSKVSAK ENSBTAP00000025850/1-623 PANPFHMSGD VDFFLLREQE RNKSLLDREQ KQQLR-VHEK MTYSSKVSAK ENSTTRP00000008071/1-604 SANPFHVSGD LDFFLLRHQE QNKSLSDRKQ KKKLR-VHEK MTYSSNVAAK bmy_22543T0/1-338 SANPFHVSGD VDFFLLRDQE RIKSLSHREQ QKQLR-VHEK MTYSSQVAAR BACU009858/1-593 SANPFHVSGD VDFFLLRDQE RIKSLLHRER QKQQRGVHEK MTYSSQVAAR 101 150 ENSP00000344749/1-611 HTSLRRQLQL EDKQEDLEAR AEAEHQRAFR DYTTWKLTLT K-EKNVEPEN ENSBTAP00000025850/1-623 HTSLRRELQL EDETEDQEER --AEQLRSFH EQVAWKLAMT R-EKKLEPNN ENSTTRP00000008071/1-604 HASLRRELQL EDEVAEQGAR --AEQLRIFH EQTAWKLSMT RAERKMEPDD bmy_22543T0/1-338 HASLRRELQQ EGEVADREAR --AEQLRIFH EQTAWKLAMT R-ERKMEPDD BACU009858/1-593 HASLRRELQL EGEVADREAR --AEQLRIFR EQTAWKLAMT R-ERKMEPDN 151 200 ENSP00000344749/1-611 MSGYIKQKRQ MFLLQYALDV KRREIQRLET LATKEEARLE RAEKSLEKDA ENSBTAP00000025850/1-623 INSYVDQNRQ MFLIQYALDM KRSEIQRLES LAAQEEAELE RAEKFLEKDA ENSTTRP00000008071/1-604 IHSYITQKRQ TFLLQYALDM KRNEIQRLER LAAKEEAKLE RAEKFLEKDA bmy_22543T0/1-338 INSYIDQKRQ MFLIQYALDM KRNEIQRLER LAAKEEAELE RAEKFLEKDA BACU009858/1-593 INSYIDQKRQ MFLIQYALDM KRNEIQRLER LAAKEEAELE QAEKFLEKDA 201 250 ENSP00000344749/1-611 ALFDEFVREN DCSSVQAMRA AEKETKAKIE KILEIRDLTT QIVNIKSEIS ENSBTAP00000025850/1-623 ALFDEFLREN DRSSVQALRM ADKESKAKME KILEIRELTT QIMNIKSEIS ENSTTRP00000008071/1-604 ARFEEFLREN DRSSLQALRA AEKETRAKME TILEIRDLTN QITIVKSEIA bmy_22543T0/1-338 ALFDEFLREN NRSSVQALRV AEKEAKAKME KILEIRDLTT QIMNIKSEIS BACU009858/1-593 ALFDEFLREN NRSSVQALRV AEKESKAKME KILEIRDLTT QVMNLKSEIA 251 300 ENSP00000344749/1-611 RFEDTLKHYK VYKDFLYKLS PKEWLEEQEK KHSFLKKAKE VSEASKESSV ENSBTAP00000025850/1-623 KFEDMLQQYK VYKDFLYKLS PKEWLEEQEK KHLALKQAKE VVEAFKESLL ENSTTRP00000008071/1-604 KFEDTLQRYK IYKDFLYKLS PKEWLEGQER KRSFLTSTRE AVEASEENVL bmy_22543T0/1-338 KFEDTLQHYK VYKDFLYKLS PTEWLEEQEG KRSALARTKE VVEAFKENAL BACU009858/1-593 KSEDTLQHYK VYRDFLYKLS PPEWLAEREG KRSALARTKE AVEAFEENAL 301 350 ENSP00000344749/1-611 NSTPGDKGPG IKGKASSMWA KEGQGTKKPW RFLQTMRLGR SPSYLSSPQQ ENSBTAP00000025850/1-623 LSSVGDRAHR L-----W--- EVGQLSEQSC RLGR-PWAST WDPEPLLASH ENSTTRP00000008071/1-604 FSTLGDKGPE IKGQR----- REEQGPEKAT KLLQVPQLRQ VRPSTVSHQG bmy_22543T0/1-338 LSALRDRGPE IKGQTGX--- ---------- ---RGMWLPQ AGGALLRAGA BACU009858/1-593 LSALGDGGPE VKAQMGL--- REEQGPKKPA RLLQVAQLRQ VPSGTLHHQQ 351 400 ENSP00000344749/1-611 GSQPSESSGG DSRGSNSPIP PTQEDTDSDG -E-EPQLYFT EPQQLLDVFR ENSBTAP00000025850/1-623 RTRDQGQAEL Q--RSSSTL- PVQDDLDSDD EE-EPELYFT DPQQLLDVFT ENSTTRP00000008071/1-604 GPRPSGPGRL GP-RACSTL- PVQEDPDSDG -E-ELQLYFT EPQQLLDVFV bmy_22543T0/1-338 DGQPSSASS- ---RGAGPK- EARQAPAGDA ---------- ---------- BACU009858/1-593 GTQPSVPGRL DPRRARSTL- PVQEDPDGAG EERELELYFT EPQQLLDVFV 401 450 ENSP00000344749/1-611 ELEEQNLSLI QNSQETEKTL EELSHTLKHT QIRM------ ---------- ENSBTAP00000025850/1-623 KLEEQNLSLV QNTQEMEEAL EELSFTLKNT QTRMASEAGA LGPQHAAGPG ENSTTRP00000008071/1-604 NLEEQNLLLV QNTQEMEEAL EELSFTLKNT QIRM------ ---------- bmy_22543T0/1-338 ---------- ---------- ---------- ---------- ---------- BACU009858/1-593 KLEEQNLSLV QNTQEMEEAL EELSFTLKNT QIRM------ ---------- 451 500 ENSP00000344749/1-611 ---------D REVNQLKQWV TTMMMSITKE EDTAAELELK ARVFHFGEYK ENSBTAP00000025850/1-623 GSEVLVPFRD REVNQLKQWI TTLMMSIAKE EETAAELELK ARVFHFGEFK ENSTTRP00000008071/1-604 ---------E REVSQLKQWI STLMMSVARE EETAAELELK ARIFHFGEYK bmy_22543T0/1-338 ---------- ---------- ---------- ---------- ---------- BACU009858/1-593 ---------D REVSQLKQWI AALMMSIAKE EEKAAELELK ARIFHFGEYK 501 550 ENSP00000344749/1-611 GDQQDKLLES LNCKVLDVYR HCTGTQQEAN LGTVQMLTII EHQLDELLEN ENSBTAP00000025850/1-623 GDQEDKLLES LNCKVLDVYR HCVGGQQESS LGTVQMLATI EHQLDELLEN ENSTTRP00000008071/1-604 GDQEDKLLES LNRKVLDVYQ HCVSSQQESS LGTVKMLATI EHQLNELLEN bmy_22543T0/1-338 ---------- ---------- ---------- ---------- ---------- BACU009858/1-593 GDQEDKLLES LTRKVLDVYR HCVGSQQESS LGTVKMLAAI ERQLDELLEN 551 600 ENSP00000344749/1-611 LEHVPQVKIE QAERAKEKER RIRLREEKLQ MQKILQEEHL QRARARAQAE ENSBTAP00000025850/1-623 LERVPPARIE QAEKAKEKER RLRLREEKAK LQKQLQEERL LRAQARAQAE ENSTTRP00000008071/1-604 LERVPQVRVE QAEKAKEKER HLRLREEKLM LQKQLQEERV QRARARAQAE bmy_22543T0/1-338 ---------- ---------- ---------- ---------- ---------- BACU009858/1-593 LERVPQARLE QAEKAKEKER RLRLREEQLK LQKQLQEERL QRAQARAQAE 601 650 ENSP00000344749/1-611 IKKKRGRTLV CRSRPPAHRI KQQSEHTLMD KEEEELLFFF T-- ENSBTAP00000025850/1-623 VKKKRGRRLV CRSRPPALKT KEQSKHELMD KDREEHLFFF T-- ENSTTRP00000008071/1-604 VKKKRGRRLV CRSRPPALQS KEAPRHELVD KDQVEWLFFF T-- bmy_22543T0/1-338 --AKAGPVWH CP--PPAGHP ---------- -AQCAWQAGP Q-- BACU009858/1-593 VKRKV--TWT AL--PSAH-- ---------- -ARC-WSTGM AAE