KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:27:26 2014 Check: 00 .. Name: ENSBTAP00000025852/1-317 Len: 383 Check: 5901 Weight: 1.00 Name: ENSTTRP00000009348/1-325 Len: 383 Check: 8126 Weight: 1.00 Name: bmy_01208T0/1-342 Len: 383 Check: 885 Weight: 1.00 Name: BACU010397/1-383 Len: 383 Check: 9281 Weight: 1.00 // 1 50 ENSBTAP00000025852/1-317 MARSLLSWLG GCLLMSALGM VPPPENVRMN SVNFKNILRW ESPAFPKGNL ENSTTRP00000009348/1-325 MAQSLRSWLG GCLLVSALGM VPPPENVRMN SVNFRNILQW ESPAFPKGNL bmy_01208T0/1-342 ---------- ---------M VPPPENVRMN SVNFKNILQW ESPAFPKGNL BACU010397/1-383 MAQSLRSWLG GCLLVSALGM VPPPENVRMN SVNFKNILQW ESPAFPKGNL 51 100 ENSBTAP00000025852/1-317 TFTAQYQSYR KFQDTCTSIL LTECDFSSLS KYGDHTLRVR AEFADESSEW ENSTTRP00000009348/1-325 TFTAQYQSYR KFQDICTSTV LTECDFSSLS KYGDHTLRVR AQFEDEHSDW bmy_01208T0/1-342 TFTAQYQSYR KFQDICTGTV LTECDFSSLS KYGDHTLRVR AQFEDEHSDW BACU010397/1-383 TFTAQYQSYR KFQDICTSTV LTECDFSSLS KYGDHTLRVR AQFEDEHSDW 101 150 ENSBTAP00000025852/1-317 INITFCPVDD TTIGPPRMQV EALANSLHVR FFAPRIENEP EPWTMRNIYN ENSTTRP00000009348/1-325 INITFCPVDD TIIGPPRIQV EALANSLHMR FLAPKIKNEP ETWSMRNIYN bmy_01208T0/1-342 INITFCPVDD TIIGPPRIQV EALANSLHMR FLAPKIKNEP ETWTMRNIYN BACU010397/1-383 INITFCPVDD TIIGPPRIQV EALANSLHMR FLAPKIKNEP ETWTMRNIYN 151 200 ENSBTAP00000025852/1-317 SWTYHVQYWK NGSDEKFLIS GQYDFEFLRN LESQTTYCVR VRGFLSDRNK ENSTTRP00000009348/1-325 SWTYHVQYWK NGSDEKFPVT GQYDFKVLRN LESQTTYCVQ VRGFLPDRNK bmy_01208T0/1-342 SWTYHVQYWK NGSDEKFLVT GQYDFEVLRN LESHTTYCVQ VRGFLPDRNK BACU010397/1-383 SWTYHVQYWK NGSDEKFPVA GQYDFEVLRN LESHTTYCVQ VRGFLPDRNK 201 250 ENSBTAP00000025852/1-317 AGEWSEPVCE QTTIDETTPS WMVASVLAAS VCAALLLLLG CFFLLRCVYR ENSTTRP00000009348/1-325 TGEWSEPVCE QTTADEIAPT WIVAGVLGAS VCTALLTLTG CFVLLRCVYK bmy_01208T0/1-342 TGEWSEPVCE QTTAAETTPS WVVAGVLGAS VCAALLLLIG CFVLLRCVYR BACU010397/1-383 TGEWSEPVCE QTTADETTPS WVVAGVLGAS VCAALLLLIG CFVLLRCVYK 251 300 ENSBTAP00000025852/1-317 KARHAFPPRN SLPQHLKEFM SHPHHSTLLL FSFPLSDENE VFDKLSVITE ENSTTRP00000009348/1-325 KAKHAIPPRN SLPQHLKEFL NHPHHSTLLL FSFPLSDENE VFDKLSVITE bmy_01208T0/1-342 KAKHAIPPRN SLPQHLKEFL NHPHHSTLLL FSFPLPVENE VFDTLSVITE BACU010397/1-383 KAKHAIPPRN SLPQHLKEFL NHPHHSTLLL FSFPLAVENE VFDTLSVITE 301 350 ENSBTAP00000025852/1-317 VSESCKLNPG AGCGLTT--- ---------- ---------- ---------- ENSTTRP00000009348/1-325 VCESHKPNLG AGCSLRTLSG ---------- -------QGP LS-------- bmy_01208T0/1-342 VSESHTPKLG AGCSLSTLSG PRSPELVSKE ETHSAGHSDP LLLTPASEGD BACU010397/1-383 VSEGHAPKLG AGCSLSTLSG PRSPELVTEE ETHSAGHSDP LLLTPASEGD 351 400 ENSBTAP00000025852/1-317 ---------- ---------- ---------- --- ENSTTRP00000009348/1-325 ---------- ---------- ---------- --- bmy_01208T0/1-342 QGSRQTRAET S--------- ---------- --- BACU010397/1-383 QGSRQTRAET SRVTPKLRTS DAGTTSTPPR SRI