KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:27 2014 Check: 00 .. Name: ENSBTAP00000025854/1-580 Len: 580 Check: 2579 Weight: 1.00 Name: ENSP00000258729/1-579 Len: 580 Check: 770 Weight: 1.00 Name: ENSTTRP00000008462/1-579 Len: 580 Check: 1513 Weight: 1.00 Name: BACU003150/1-438 Len: 580 Check: 7074 Weight: 1.00 Name: bmy_14514T0/1-333 Len: 580 Check: 2599 Weight: 1.00 // 1 50 ENSBTAP00000025854/1-580 MNKLYIGNLS ENAVPSDLES VFKDAKIPVS GPFLVKTGYA FVDCPDDSWA ENSP00000258729/1-579 MNKLYIGNLS ENAAPSDLES IFKDAKIPVS GPFLVKTGYA FVDCPDESWA ENSTTRP00000008462/1-579 MNKLYIGNLS ENAVPSDLES IFKDAKIPVS GPFLVKTGYA FVDCPDESWA BACU003150/1-438 ---------- ---------- ---------- ---------- -------MWA bmy_14514T0/1-333 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000025854/1-580 LKAIEALSGK VELHGKLIEV EHSVPKRQRI RKLQIRNIPP HLQWEVLDSL ENSP00000258729/1-579 LKAIEALSGK IELHGKPIEV EHSVPKRQRI RKLQIRNIPP HLQWEVLDSL ENSTTRP00000008462/1-579 LKAIEALSGK VELHGKLIEV EHSVPKRQRI RKLQIRNIPP HLQWEVLDSL BACU003150/1-438 ASTWRYVLKR ---------- ---PSRSRRA YSFQTKYVLG V----VLDSL bmy_14514T0/1-333 ---------- ---------- ---------- ---------- -----VLDSL 101 150 ENSBTAP00000025854/1-580 LVQYGVVESC EQVNTDSETA VVNVTYSNKE QARQALDKLN GFQLENFTLR ENSP00000258729/1-579 LVQYGVVESC EQVNTDSETA VVNVTYSSKD QARQALDKLN GFQLENFTLK ENSTTRP00000008462/1-579 LVQYGVVESC EQVNTDSETA VVNVTYSSKE QARQALDKLN GFQLENFTLK BACU003150/1-438 LVQYGVVESC EQVNTDSETA VVNVTYSSKE QARQALDKLN GFQLENFTLK bmy_14514T0/1-333 LVQYGVVESC EQVNTDSETA VVNVTYSSKE QARQALDKLN GFQLENFTLK 151 200 ENSBTAP00000025854/1-580 VAYIPDEMAA QQSPSQQPRG RRGFGQRGSS RQGSPGSVSK QKPCDLPLRL ENSP00000258729/1-579 VAYIPDEMAA QQNPLQQPRG RRGLGQRGSS RQGSPGSVSK QKPCDLPLRL ENSTTRP00000008462/1-579 VAYIPDEMAA QQNPSQQPRG RRGFGQRGSS RQGSPGSMSK QKPCDLPLRL BACU003150/1-438 VAYIPDEMAA QQNPSQQPRG RRGFGQRGSS RQGSPGSMSK QKPCDLPLRL bmy_14514T0/1-333 VAYIPDEMAA QQNPSQQPRG RRGFGQRGSS RQGSPGSMSK QKPCDLPLRL 201 250 ENSBTAP00000025854/1-580 LVPTQFVGAI IGKEGATIRN ITKQTQSKID VHRKENAGAA EKSITILSTP ENSP00000258729/1-579 LVPTQFVGAI IGKEGATIRN ITKQTQSKID VHRKENAGAA EKSITILSTP ENSTTRP00000008462/1-579 LVPTQFVGAI IGKEGATIRN ITKQTQSKID VHRKENAGAA EKSITILSTP BACU003150/1-438 LVPTQFVGAI IGKEGATIRN ITKQTQSN-- ---------- ---------- bmy_14514T0/1-333 LVPTQFVGAI IGKEGATIRN ITKQTQSKID VHRKENAGAA EKSITILSTP 251 300 ENSBTAP00000025854/1-580 EGTSAACKSI LEIMHKEAQD IKFTEEIPLK ILAHNNFVGR LIGKEGRNLK ENSP00000258729/1-579 EGTSAACKSI LEIMHKEAQD IKFTEEIPLK ILAHNNFVGR LIGKEGRNLK ENSTTRP00000008462/1-579 EGTSAACKSI LEIMHKEAQD IKFTEEIPLK ILAHNNFVGR LIGKEGRNLK BACU003150/1-438 ---------- ---------- ---TEEIPLK ILAHNNFVGR LIGKEGRNLK bmy_14514T0/1-333 EGTSAACKSI LEIMHKEAQD IKFTEEIPLK ILAHNNFVGR LIGKEGRNLK 301 350 ENSBTAP00000025854/1-580 KIEQDTDTKI TISPLQELTL YNPERTITVK GNVETCAKAE EEIMKKIRES ENSP00000258729/1-579 KIEQDTDTKI TISPLQELTL YNPERTITVK GNVETCAKAE EEIMKKIRES ENSTTRP00000008462/1-579 KIEQDTDTKI TISPLQELTL YNPERTITVK GSVETCAKAE EEIMKKIRES BACU003150/1-438 KIEQDTDTKI TISPLQELTL YNPERTITVK GSVETCAKAE EEIMKKIRES bmy_14514T0/1-333 KIEQDTDTKI TISPLQELTL YNPERTITVK GSVETCAKAE EEIMKKIRES 351 400 ENSBTAP00000025854/1-580 YENDIASMNL QAHLIPGLNL NALGLFPPTS GMPPPTSGPP SAITPPYPQF ENSP00000258729/1-579 YENDIASMNL QAHLIPGLNL NALGLFPPTS GMPPPTSGPP SAMTPPYPQF ENSTTRP00000008462/1-579 YENDIASMNL QAHLIPGLNL NALGLFPPTS GMPPPTSGPP SAMTPPYPQF BACU003150/1-438 YENDIASMNL QAHLIPGLNL NALGLFPPTS GMPPPTSGPP SAMTPPYPQF bmy_14514T0/1-333 YENDIASMNL QAHLIPGLNL NALGLFPPTS GMPPPTSGPP SAMTPPYPQF 401 450 ENSBTAP00000025854/1-580 EQQSETETVH LFIPALSVGA IIGKQGQHIK QLSRFAGASI KIAPAEAPDA ENSP00000258729/1-579 E-QSETETVH LFIPALSVGA IIGKQGQHIK QLSRFAGASI KIAPAEAPDA ENSTTRP00000008462/1-579 E-QSETETVH LFIPALSVGA IIGKQGQHIK QLSRFAGASI KIAPAEAPDA BACU003150/1-438 E-QSETETVH LFIPALSVGA IIGKQGQHIK QLSRFAGASI KIAPAEAPDA bmy_14514T0/1-333 E-VRQCALAF FMVE------ -----GDEVK G--------- ---------- 451 500 ENSBTAP00000025854/1-580 KVRMVIITGP PEAQFKAQGR IYGKIKEENF VSPKEEVKLE AHIRVPSFAA ENSP00000258729/1-579 KVRMVIITGP PEAQFKAQGR IYGKIKEENF VSPKEEVKLE AHIRVPSFAA ENSTTRP00000008462/1-579 KVRMVIITGP PEAQFKAQGR IYGKIKEENF VSPKEEVKLE AHIRVPSFAA BACU003150/1-438 KVRMVIITGP PEAQFKAQGR IYGKIKEENF VSPKEEVKLE AHIRVPSFAA bmy_14514T0/1-333 ---------- ---------- -----TQSDF VALE------ ---------- 501 550 ENSBTAP00000025854/1-580 GRVIGKGGKT VNELQNLSSA EVVVPRDQTP DENDQVVVKI TGHFYACQVA ENSP00000258729/1-579 GRVIGKGGKT VNELQNLSSA EVVVPRDQTP DENDQVVVKI TGHFYACQVA ENSTTRP00000008462/1-579 GRVIGKGGKT VNELQNLSSA EVVVPRDQTP DENDQVVVKI TGHFYACQVA BACU003150/1-438 GRVIGKGGKT AST------- ---------- ---------- -----SAKPA bmy_14514T0/1-333 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000025854/1-580 QRKIQEILTQ VKQHQQQKAL QSGPSQSRRK ENSP00000258729/1-579 QRKIQEILTQ VKQHQQQKAL QSGPPQSRRK ENSTTRP00000008462/1-579 QRKIQEILTQ VKQHQQQKAL QSGPPQSRRK BACU003150/1-438 QRKIQEILTQ VKQHQQQKAL QSGPPQSRRK bmy_14514T0/1-333 ---------- ---------- ----------