KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:29 2014 Check: 00 .. Name: bmy_06286T0/1-818 Len: 1083 Check: 1856 Weight: 1.00 Name: ENSTTRP00000002301/1-962 Len: 1083 Check: 2458 Weight: 1.00 Name: BACU018270/1-965 Len: 1083 Check: 5276 Weight: 1.00 Name: ENSP00000400815/1-1052 Len: 1083 Check: 75 Weight: 1.00 Name: ENSBTAP00000025864/1-963 Len: 1083 Check: 4603 Weight: 1.00 // 1 50 bmy_06286T0/1-818 ---------- ---------- ---------- ---------- -------MAA ENSTTRP00000002301/1-962 ---------- ---------- ---------- ---------- ---------- BACU018270/1-965 ---------- ---------- ---------- ---------- ---------- ENSP00000400815/1-1052 MAPAGVVTRA VRSGELPLTS MASAENEACA VRSVACPSQA WRLQKVLCGR ENSBTAP00000025864/1-963 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_06286T0/1-818 RAARSAPCGR ARPPLTIMAA LALRGGAPAP HKHGGRSGRG LEGRIGLAVP ENSTTRP00000002301/1-962 ---------- ---------- ---------- ---------- ------MAVF BACU018270/1-965 ---------- ---------- ---------- ---------- --------LF ENSP00000400815/1-1052 CGAASCPSQT WRPRGAGSGG VRMGSRADGP RTSGHVTGK- ------MAVF ENSBTAP00000025864/1-963 ---------- ---------- ---------- ---------- ------MAAF 101 150 bmy_06286T0/1-818 ELAVMNRNYK AEFASCRLEA VPLEFGDYHP LKPITVTESK TKKVSRKGST ENSTTRP00000002301/1-962 PWHSRNRNYK AEFASCRLEA VPLEFGDYHP LKPITVTESK TKKVSRKGST BACU018270/1-965 TRHSRNRNYK AEFASCRLEA VPLEFGDYHP LKPITVTESK TKKVSRKGST ENSP00000400815/1-1052 PWHSRNRNYK AEFASCRLEA VPLEFGDYHP LKPITVTESK TKKVNRKGST ENSBTAP00000025864/1-963 PWHSRNRNYK AEFASCRLEA VPLEFGDYHP LKPITVTESK TKKVSRKGST 151 200 bmy_06286T0/1-818 SSTSSSSSSS VVDPLSSVLD GTDPLSMFAA SADPAALAAT TDNSRKKRDR ENSTTRP00000002301/1-962 SSTSSSSSSS VVDPLSSVLD GTDPLSMFAA SADPAALAAT TENSRKKRDR BACU018270/1-965 SSTSSSSSSS VVDPLSSVLD GTDPLSMFAA SADPAALAAT TDNSRKKRDR ENSP00000400815/1-1052 SSTSSSSSSS VVDPLSSVLD GTDPLSMFAA TADPAALAAA MDSSRRKRDR ENSBTAP00000025864/1-963 SSTSSSSSSS VVDPLSSVLD GTDPLSMFAA SADPATLAAA MDSSRKKRDR 201 250 bmy_06286T0/1-818 DDNSIVGSDF EPWASKRGEI LARYTTTEKL SINLFMGSEK --------GK ENSTTRP00000002301/1-962 DDNSIVGSDF EPWASKRGEI LARYTTTEKL SINLFMGSEK --------XX BACU018270/1-965 DDNSIVGSDF EPWASKRGEI LARYTTTEKL SINLFMGSEK ANTQYCSWGR ENSP00000400815/1-1052 DDNSVVGSDF EPWTNKRGEI LARYTTTEKL SINLFMGSEK --------GK ENSBTAP00000025864/1-963 DDNSIVGSDF EPWASKRGEI LARYTTTEKL SINLFMGSEK --------GK 251 300 bmy_06286T0/1-818 AGTAVSAMSE KVRTRLEELD DF-EEGSQKE LLNLTQQDYV NRIEELNQSL ENSTTRP00000002301/1-962 XXXXXXXXXX XXXXXXXXXX XX-XXGSQKE LLNLTQQDYV NRIEELNQSL BACU018270/1-965 GGSPTVFFLL CLY-----LS TFCAQGSQKE LLNLTQQDYV NRIEELNQSL ENSP00000400815/1-1052 AGTATLAMSE KVRTRLEELD DF-EEGSQKE LLNLTQQDYV NRIEELNQSL ENSBTAP00000025864/1-963 AGTATSAMSE KVRTRLEELD DF-EEGSQKE LLNLTQQDYV NRIEELNQSL 301 350 bmy_06286T0/1-818 KDAWASDQKV KALKIVIQCS KLLSDTSVIQ FYPSKFVLIT DILDTFGKLV ENSTTRP00000002301/1-962 KDAWASDQKV KALKIVIQCS KLLSDTSFIQ FYPSK-VLIA DILDTXXKLV BACU018270/1-965 KDAWASDQKV KALKIVIQCS KLLSDTSVIQ FYPSKFVLIT DILDTFGKLV ENSP00000400815/1-1052 KDAWASDQKV KALKIVIQCS KLLSDTSVIQ FYPSKFVLIT DILDTFGKLV ENSBTAP00000025864/1-963 KDAWASDQKV KALKIVIQCS KLLSDTSVIQ FYPSKFVLIT DILDTFGKLV 351 400 bmy_06286T0/1-818 YERIFSMCMD NRSVLPDHFS PENVNDTAKE TCLNWFFKIA SIRELIPRLY ENSTTRP00000002301/1-962 YERIFSMCVD NHSILPDHFS PENVNDTAKE TCLNWFFKIA SIRELIPRF- BACU018270/1-965 YERIFSMCMD NRSVLPDHFS PENVNDTAKE TCLNWFFKIA SIRELIPRF- ENSP00000400815/1-1052 YERIFSMCVD SRSVLPDHFS PENANDTAKE TCLNWFFKIA SIRELIPRF- ENSBTAP00000025864/1-963 YERIFSMCVD NRSVLPDHFS PENVNDTAKE TCLNWFFKIA SIRELIPRF- 401 450 bmy_06286T0/1-818 PFFLSDGFKD RLQDYVEASI LKCNKFLSKT GISECLPRLT CMVRGIGDPL ENSTTRP00000002301/1-962 ---------- ----YVEASI LKCNKFLSKT GISECLPRLT CMVRGIGDPL BACU018270/1-965 ---------- ----YVEASI LKCNKFLSKT GISECLPRLT CMVRGIGDPL ENSP00000400815/1-1052 ---------- ----YVEASI LKCNKFLSKT GISECLPRLT CMIRGIGDPL ENSBTAP00000025864/1-963 ---------- ----YVEASI LKCNKFLSKT GISECLPRLT CMVRGIGDPL 451 500 bmy_06286T0/1-818 VSVYARAYLC RVGMEVAPHL KESLNKNFFD FLLTFKQIHG DTVQNQLVLQ ENSTTRP00000002301/1-962 VSVYARAYLC RVGMEVAPHL KESLDKNFFD FLLTFKQIHG DTVQNQLVLQ BACU018270/1-965 VSVYARAYLC RVGMEVAPHL KESLNKNFFD FLLTFQQIHG DTVQNQLVLQ ENSP00000400815/1-1052 VSVYARAYLC RVGMEVAPHL KETLNKNFFD FLLTFKQIHG DTVQNQLVVQ ENSBTAP00000025864/1-963 VSVYARAYLC RVGMEVAPHL KESLNKNFFD FLLTFKQIHG DTVQNQLVLQ 501 550 bmy_06286T0/1-818 GVELPSYLPL YSPAMDWIFQ CISYHAPEAL LTEMMERCKK LGNNALLLNS ENSTTRP00000002301/1-962 GVELPSYLPL YSPAMDWIFQ CISYHAPEAL LTEMMERCKK LANNALLLNS BACU018270/1-965 GVELPSYLPL YSPAMDWIFQ CISYHAPEAL LTEMMERCKK LGNNALLLNS ENSP00000400815/1-1052 GVELPSYLPL YPPAMDWIFQ CISYHAPEAL LTEMMERCKK LGNNALLLNS ENSBTAP00000025864/1-963 GVELPSYLPL YSPAMDWVFQ CVSYHAPEAL LTEMMERCKK LGNNALLLNS 551 600 bmy_06286T0/1-818 VMSAFRAEFI ATRSMDFIGM IKECDESGFP KHLLFRSLGL NLALADPPES ENSTTRP00000002301/1-962 VMSAFRAEFI ATRSMDFIGM IKECDESGFP KHLLFRSLGL NLALANPPES BACU018270/1-965 VMSAFRAEFI ATRSMDFIGM IKECDESGFP KHLLFRSLGL NLALADPPES ENSP00000400815/1-1052 VMSAFRAEFI ATRSMDFIGM IKECDESGFP KHLLFRSLGL NLALADPPES ENSBTAP00000025864/1-963 VMSAFRAEFI ATRSMDFIGM IKECDESGFP KHLLFRSLGL NLALADPPES 601 650 bmy_06286T0/1-818 DRLQILNEAW KVITKLKNPQ DYINCAEVWV EYTCKHFTKR EVNTVLADVI ENSTTRP00000002301/1-962 DRLQILNEAW KVITKLKNPQ DYINCAEVWV EYTCKHFTKR EVNTVLADVI BACU018270/1-965 DRLQILNEAW KVITKLKNPQ DYINCAEVWV EYTCKHFTKR EVNTVLADVI ENSP00000400815/1-1052 DRLQILNEAW KVITKLKNPQ DYINCAEVWV EYTCKHFTKR EVNTVLADVI ENSBTAP00000025864/1-963 DRLQILNEAW KVITKLKNPQ DYINCAEVWV EYTCRHFTKR EVNTVLADVI 651 700 bmy_06286T0/1-818 KHMTPDRAFE DSYPQLQSII KKVIAHFHDF S-----EKFL PFLDMFQKES ENSTTRP00000002301/1-962 KHMTPDRAFE DSYPQLQSII KKVIAHFHDF SVLFSVEKFL PFLDMFQKES BACU018270/1-965 KHMTPDRAFE DSYPQLQSII KKVIAHFHDF SVLFSVEKFL PFLDMFQKES ENSP00000400815/1-1052 KHMTPDRAFE DSYPQLQLII KKVIAHFHDF SVLFSVEKFL PFLDMFQKES ENSBTAP00000025864/1-963 KHMTPDRAFE DSYPQLQSII KKVIAHFHDF SVLFSVEKFL PFLDMFQKES 701 750 bmy_06286T0/1-818 VRVEVCKRIM EVFIKHQQEP TKDPVILNAL LHVCKTMHDS VNALTLEDEK ENSTTRP00000002301/1-962 VRVEVCKCIM EVFIKHQQEP TKDPVILNAL LHICKTMHDS VNALTLEDEK BACU018270/1-965 VRVEVCKCIM EVFIKHQQEP TKDPVILNAL LHVCKTMHDS VNALTLEDEK ENSP00000400815/1-1052 VRVEVCKCIM DAFIKHQQEP TKDPVILNAL LHVCKTMHDS VNALTLEDEK ENSBTAP00000025864/1-963 VRVEVCKCIM EVFIKHQQEP TKDPVILNAL LHVCKTMHDS VNALTLEDEK 751 800 bmy_06286T0/1-818 RMLAYLINGF IKMVSFGRDF EQQLSFYVEA RSMFCNLEPV LVQLIHSVNR ENSTTRP00000002301/1-962 RMLAYLINGF IKMVSFGRDF EQQLSFYVEA RSMFCNLEPV LVQLIHSVNR BACU018270/1-965 RMLAYLINGF IKMVSFGRDF EQQLSFYVEA RSMFCNLEPV LVQLIHSVNR ENSP00000400815/1-1052 RMLSYLINGF IKMVSFGRDF EQQLSFYVES RSMFCNLEPV LVQLIHSVNR ENSBTAP00000025864/1-963 RMLAYLINGF IKMVSFGRDF EQQLSFYVEA RSMFCNLEPV LVQLIHSVNR 801 850 bmy_06286T0/1-818 LAMETRKVMK GNHSRKTAAF VRACVAYCFI TIPSLVGIFS RLNLYLHSGQ ENSTTRP00000002301/1-962 LAMETRKVMK GNHSRKTAAF VRACVAYCFI TIPSLVGIFT RLNLYLHSGQ BACU018270/1-965 LAMETRKVMK GNHSRKTAAF VRACVAYCFI TIPSLVGIFS RLNLYLHSGQ ENSP00000400815/1-1052 LAMETRKVMK GNHSRKTAAF VRACVAYCFI TIPSLAGIFT RLNLYLHSGQ ENSBTAP00000025864/1-963 LAMETRKVMK GNHSRKTAAF VRACVAYCFI TIPSLVGIFT RLNLYLHSGQ 851 900 bmy_06286T0/1-818 VALANQCLSQ GE-------- ---------- ------PITH SLLSF----- ENSTTRP00000002301/1-962 VALANQCLSQ ADAFFKAAIS LVPEVPKMIN IDGKMRPSES FLLEFLCNFF BACU018270/1-965 VALANQCLSQ ADAFFKAAIS LVPEVPKMIN IDGKMRPSES FLLEFLCNFF ENSP00000400815/1-1052 VALANQCLSQ ADAFFKAAIS LVPEVPKMIN IDGKMRPSES FLLEFLCNFF ENSBTAP00000025864/1-963 VALANQCLSQ ADAFFKAAIS LVPEVPKMIN IDGKMRPSES FLLEFLCNFF 901 950 bmy_06286T0/1-818 ---------- ---------- ---------- ---------- --ALRHFLAP ENSTTRP00000002301/1-962 STLLIVPDHP EHGVLFLVRE LLNVIQDYTW EDNSDEKIRI YTCVLHLLSA BACU018270/1-965 STLLIVPDHP EHGVLFLVRE LLNVIQDYTW EDNSDEKIRI YTCVLHLLSA ENSP00000400815/1-1052 STLLIVPDHP EHGVLFLVRE LLNVIQDYTW EDNSDEKIRI YTCVLHLLSA ENSBTAP00000025864/1-963 STLLIVPDHP EHGVLFLVRE LLNVVQDYTW EENSDEKIRI YTCVLHLLSA 951 1000 bmy_06286T0/1-818 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002301/1-962 MSQETYLYHV DKVDSNDSLY GGDSKFLAEN NKLCETVMAQ ILEHLKTLAK BACU018270/1-965 MSQETYLYHV DKVDSNDSLY GGDSKFLAEN NKLCETVMAQ ILEHLKTLAK ENSP00000400815/1-1052 MSQETYLYHI DKVDSNDSLY GGDSKFLAEN NKLCETVMAQ ILEHLKTLAK ENSBTAP00000025864/1-963 MSQETYLYHV DKVDSNDSLY GGDSKFLAEN NKLCETVMAQ ILEHLKTLAK 1001 1050 bmy_06286T0/1-818 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002301/1-962 DEALKRQSSL GLSFFNSILA HGDLRSNRLN QLSVNLWHLA QRHGCADTRT BACU018270/1-965 DEALKRQSSL GLSFFNSILA HGDLRNNRLN QLSVNLWHLA QRHGCADTRT ENSP00000400815/1-1052 DEALKRQSSL GLSFFNSILA HGDLRNNKLN QLSVNLWHLA QRHGCADTRT ENSBTAP00000025864/1-963 DEALKRQSSL GLSFFNSILA HGDLRNNRLN QLSVNLWHLA QRHGCVDTRT 1051 1100 bmy_06286T0/1-818 ---------- ---------- ---------- --- ENSTTRP00000002301/1-962 MVKTLEYIKK RSKHPDMGHL TELALRLPLQ TRT BACU018270/1-965 MVKTLEYIKK RSKRPDMGHL TELALRLPLQ TRT ENSP00000400815/1-1052 MVKTLEYIKK QSKQPDMTHL TELALRLPLQ TRT ENSBTAP00000025864/1-963 MVKTLEYIKK QSKQPDMGHL TELALRLPLQ TRT