KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:27:29 2014 Check: 00 ..
Name: bmy_06286T0/1-818 Len: 1083 Check: 1856 Weight: 1.00
Name: ENSTTRP00000002301/1-962 Len: 1083 Check: 2458 Weight: 1.00
Name: BACU018270/1-965 Len: 1083 Check: 5276 Weight: 1.00
Name: ENSP00000400815/1-1052 Len: 1083 Check: 75 Weight: 1.00
Name: ENSBTAP00000025864/1-963 Len: 1083 Check: 4603 Weight: 1.00
//
1 50
bmy_06286T0/1-818 ---------- ---------- ---------- ---------- -------MAA
ENSTTRP00000002301/1-962 ---------- ---------- ---------- ---------- ----------
BACU018270/1-965 ---------- ---------- ---------- ---------- ----------
ENSP00000400815/1-1052 MAPAGVVTRA VRSGELPLTS MASAENEACA VRSVACPSQA WRLQKVLCGR
ENSBTAP00000025864/1-963 ---------- ---------- ---------- ---------- ----------
51 100
bmy_06286T0/1-818 RAARSAPCGR ARPPLTIMAA LALRGGAPAP HKHGGRSGRG LEGRIGLAVP
ENSTTRP00000002301/1-962 ---------- ---------- ---------- ---------- ------MAVF
BACU018270/1-965 ---------- ---------- ---------- ---------- --------LF
ENSP00000400815/1-1052 CGAASCPSQT WRPRGAGSGG VRMGSRADGP RTSGHVTGK- ------MAVF
ENSBTAP00000025864/1-963 ---------- ---------- ---------- ---------- ------MAAF
101 150
bmy_06286T0/1-818 ELAVMNRNYK AEFASCRLEA VPLEFGDYHP LKPITVTESK TKKVSRKGST
ENSTTRP00000002301/1-962 PWHSRNRNYK AEFASCRLEA VPLEFGDYHP LKPITVTESK TKKVSRKGST
BACU018270/1-965 TRHSRNRNYK AEFASCRLEA VPLEFGDYHP LKPITVTESK TKKVSRKGST
ENSP00000400815/1-1052 PWHSRNRNYK AEFASCRLEA VPLEFGDYHP LKPITVTESK TKKVNRKGST
ENSBTAP00000025864/1-963 PWHSRNRNYK AEFASCRLEA VPLEFGDYHP LKPITVTESK TKKVSRKGST
151 200
bmy_06286T0/1-818 SSTSSSSSSS VVDPLSSVLD GTDPLSMFAA SADPAALAAT TDNSRKKRDR
ENSTTRP00000002301/1-962 SSTSSSSSSS VVDPLSSVLD GTDPLSMFAA SADPAALAAT TENSRKKRDR
BACU018270/1-965 SSTSSSSSSS VVDPLSSVLD GTDPLSMFAA SADPAALAAT TDNSRKKRDR
ENSP00000400815/1-1052 SSTSSSSSSS VVDPLSSVLD GTDPLSMFAA TADPAALAAA MDSSRRKRDR
ENSBTAP00000025864/1-963 SSTSSSSSSS VVDPLSSVLD GTDPLSMFAA SADPATLAAA MDSSRKKRDR
201 250
bmy_06286T0/1-818 DDNSIVGSDF EPWASKRGEI LARYTTTEKL SINLFMGSEK --------GK
ENSTTRP00000002301/1-962 DDNSIVGSDF EPWASKRGEI LARYTTTEKL SINLFMGSEK --------XX
BACU018270/1-965 DDNSIVGSDF EPWASKRGEI LARYTTTEKL SINLFMGSEK ANTQYCSWGR
ENSP00000400815/1-1052 DDNSVVGSDF EPWTNKRGEI LARYTTTEKL SINLFMGSEK --------GK
ENSBTAP00000025864/1-963 DDNSIVGSDF EPWASKRGEI LARYTTTEKL SINLFMGSEK --------GK
251 300
bmy_06286T0/1-818 AGTAVSAMSE KVRTRLEELD DF-EEGSQKE LLNLTQQDYV NRIEELNQSL
ENSTTRP00000002301/1-962 XXXXXXXXXX XXXXXXXXXX XX-XXGSQKE LLNLTQQDYV NRIEELNQSL
BACU018270/1-965 GGSPTVFFLL CLY-----LS TFCAQGSQKE LLNLTQQDYV NRIEELNQSL
ENSP00000400815/1-1052 AGTATLAMSE KVRTRLEELD DF-EEGSQKE LLNLTQQDYV NRIEELNQSL
ENSBTAP00000025864/1-963 AGTATSAMSE KVRTRLEELD DF-EEGSQKE LLNLTQQDYV NRIEELNQSL
301 350
bmy_06286T0/1-818 KDAWASDQKV KALKIVIQCS KLLSDTSVIQ FYPSKFVLIT DILDTFGKLV
ENSTTRP00000002301/1-962 KDAWASDQKV KALKIVIQCS KLLSDTSFIQ FYPSK-VLIA DILDTXXKLV
BACU018270/1-965 KDAWASDQKV KALKIVIQCS KLLSDTSVIQ FYPSKFVLIT DILDTFGKLV
ENSP00000400815/1-1052 KDAWASDQKV KALKIVIQCS KLLSDTSVIQ FYPSKFVLIT DILDTFGKLV
ENSBTAP00000025864/1-963 KDAWASDQKV KALKIVIQCS KLLSDTSVIQ FYPSKFVLIT DILDTFGKLV
351 400
bmy_06286T0/1-818 YERIFSMCMD NRSVLPDHFS PENVNDTAKE TCLNWFFKIA SIRELIPRLY
ENSTTRP00000002301/1-962 YERIFSMCVD NHSILPDHFS PENVNDTAKE TCLNWFFKIA SIRELIPRF-
BACU018270/1-965 YERIFSMCMD NRSVLPDHFS PENVNDTAKE TCLNWFFKIA SIRELIPRF-
ENSP00000400815/1-1052 YERIFSMCVD SRSVLPDHFS PENANDTAKE TCLNWFFKIA SIRELIPRF-
ENSBTAP00000025864/1-963 YERIFSMCVD NRSVLPDHFS PENVNDTAKE TCLNWFFKIA SIRELIPRF-
401 450
bmy_06286T0/1-818 PFFLSDGFKD RLQDYVEASI LKCNKFLSKT GISECLPRLT CMVRGIGDPL
ENSTTRP00000002301/1-962 ---------- ----YVEASI LKCNKFLSKT GISECLPRLT CMVRGIGDPL
BACU018270/1-965 ---------- ----YVEASI LKCNKFLSKT GISECLPRLT CMVRGIGDPL
ENSP00000400815/1-1052 ---------- ----YVEASI LKCNKFLSKT GISECLPRLT CMIRGIGDPL
ENSBTAP00000025864/1-963 ---------- ----YVEASI LKCNKFLSKT GISECLPRLT CMVRGIGDPL
451 500
bmy_06286T0/1-818 VSVYARAYLC RVGMEVAPHL KESLNKNFFD FLLTFKQIHG DTVQNQLVLQ
ENSTTRP00000002301/1-962 VSVYARAYLC RVGMEVAPHL KESLDKNFFD FLLTFKQIHG DTVQNQLVLQ
BACU018270/1-965 VSVYARAYLC RVGMEVAPHL KESLNKNFFD FLLTFQQIHG DTVQNQLVLQ
ENSP00000400815/1-1052 VSVYARAYLC RVGMEVAPHL KETLNKNFFD FLLTFKQIHG DTVQNQLVVQ
ENSBTAP00000025864/1-963 VSVYARAYLC RVGMEVAPHL KESLNKNFFD FLLTFKQIHG DTVQNQLVLQ
501 550
bmy_06286T0/1-818 GVELPSYLPL YSPAMDWIFQ CISYHAPEAL LTEMMERCKK LGNNALLLNS
ENSTTRP00000002301/1-962 GVELPSYLPL YSPAMDWIFQ CISYHAPEAL LTEMMERCKK LANNALLLNS
BACU018270/1-965 GVELPSYLPL YSPAMDWIFQ CISYHAPEAL LTEMMERCKK LGNNALLLNS
ENSP00000400815/1-1052 GVELPSYLPL YPPAMDWIFQ CISYHAPEAL LTEMMERCKK LGNNALLLNS
ENSBTAP00000025864/1-963 GVELPSYLPL YSPAMDWVFQ CVSYHAPEAL LTEMMERCKK LGNNALLLNS
551 600
bmy_06286T0/1-818 VMSAFRAEFI ATRSMDFIGM IKECDESGFP KHLLFRSLGL NLALADPPES
ENSTTRP00000002301/1-962 VMSAFRAEFI ATRSMDFIGM IKECDESGFP KHLLFRSLGL NLALANPPES
BACU018270/1-965 VMSAFRAEFI ATRSMDFIGM IKECDESGFP KHLLFRSLGL NLALADPPES
ENSP00000400815/1-1052 VMSAFRAEFI ATRSMDFIGM IKECDESGFP KHLLFRSLGL NLALADPPES
ENSBTAP00000025864/1-963 VMSAFRAEFI ATRSMDFIGM IKECDESGFP KHLLFRSLGL NLALADPPES
601 650
bmy_06286T0/1-818 DRLQILNEAW KVITKLKNPQ DYINCAEVWV EYTCKHFTKR EVNTVLADVI
ENSTTRP00000002301/1-962 DRLQILNEAW KVITKLKNPQ DYINCAEVWV EYTCKHFTKR EVNTVLADVI
BACU018270/1-965 DRLQILNEAW KVITKLKNPQ DYINCAEVWV EYTCKHFTKR EVNTVLADVI
ENSP00000400815/1-1052 DRLQILNEAW KVITKLKNPQ DYINCAEVWV EYTCKHFTKR EVNTVLADVI
ENSBTAP00000025864/1-963 DRLQILNEAW KVITKLKNPQ DYINCAEVWV EYTCRHFTKR EVNTVLADVI
651 700
bmy_06286T0/1-818 KHMTPDRAFE DSYPQLQSII KKVIAHFHDF S-----EKFL PFLDMFQKES
ENSTTRP00000002301/1-962 KHMTPDRAFE DSYPQLQSII KKVIAHFHDF SVLFSVEKFL PFLDMFQKES
BACU018270/1-965 KHMTPDRAFE DSYPQLQSII KKVIAHFHDF SVLFSVEKFL PFLDMFQKES
ENSP00000400815/1-1052 KHMTPDRAFE DSYPQLQLII KKVIAHFHDF SVLFSVEKFL PFLDMFQKES
ENSBTAP00000025864/1-963 KHMTPDRAFE DSYPQLQSII KKVIAHFHDF SVLFSVEKFL PFLDMFQKES
701 750
bmy_06286T0/1-818 VRVEVCKRIM EVFIKHQQEP TKDPVILNAL LHVCKTMHDS VNALTLEDEK
ENSTTRP00000002301/1-962 VRVEVCKCIM EVFIKHQQEP TKDPVILNAL LHICKTMHDS VNALTLEDEK
BACU018270/1-965 VRVEVCKCIM EVFIKHQQEP TKDPVILNAL LHVCKTMHDS VNALTLEDEK
ENSP00000400815/1-1052 VRVEVCKCIM DAFIKHQQEP TKDPVILNAL LHVCKTMHDS VNALTLEDEK
ENSBTAP00000025864/1-963 VRVEVCKCIM EVFIKHQQEP TKDPVILNAL LHVCKTMHDS VNALTLEDEK
751 800
bmy_06286T0/1-818 RMLAYLINGF IKMVSFGRDF EQQLSFYVEA RSMFCNLEPV LVQLIHSVNR
ENSTTRP00000002301/1-962 RMLAYLINGF IKMVSFGRDF EQQLSFYVEA RSMFCNLEPV LVQLIHSVNR
BACU018270/1-965 RMLAYLINGF IKMVSFGRDF EQQLSFYVEA RSMFCNLEPV LVQLIHSVNR
ENSP00000400815/1-1052 RMLSYLINGF IKMVSFGRDF EQQLSFYVES RSMFCNLEPV LVQLIHSVNR
ENSBTAP00000025864/1-963 RMLAYLINGF IKMVSFGRDF EQQLSFYVEA RSMFCNLEPV LVQLIHSVNR
801 850
bmy_06286T0/1-818 LAMETRKVMK GNHSRKTAAF VRACVAYCFI TIPSLVGIFS RLNLYLHSGQ
ENSTTRP00000002301/1-962 LAMETRKVMK GNHSRKTAAF VRACVAYCFI TIPSLVGIFT RLNLYLHSGQ
BACU018270/1-965 LAMETRKVMK GNHSRKTAAF VRACVAYCFI TIPSLVGIFS RLNLYLHSGQ
ENSP00000400815/1-1052 LAMETRKVMK GNHSRKTAAF VRACVAYCFI TIPSLAGIFT RLNLYLHSGQ
ENSBTAP00000025864/1-963 LAMETRKVMK GNHSRKTAAF VRACVAYCFI TIPSLVGIFT RLNLYLHSGQ
851 900
bmy_06286T0/1-818 VALANQCLSQ GE-------- ---------- ------PITH SLLSF-----
ENSTTRP00000002301/1-962 VALANQCLSQ ADAFFKAAIS LVPEVPKMIN IDGKMRPSES FLLEFLCNFF
BACU018270/1-965 VALANQCLSQ ADAFFKAAIS LVPEVPKMIN IDGKMRPSES FLLEFLCNFF
ENSP00000400815/1-1052 VALANQCLSQ ADAFFKAAIS LVPEVPKMIN IDGKMRPSES FLLEFLCNFF
ENSBTAP00000025864/1-963 VALANQCLSQ ADAFFKAAIS LVPEVPKMIN IDGKMRPSES FLLEFLCNFF
901 950
bmy_06286T0/1-818 ---------- ---------- ---------- ---------- --ALRHFLAP
ENSTTRP00000002301/1-962 STLLIVPDHP EHGVLFLVRE LLNVIQDYTW EDNSDEKIRI YTCVLHLLSA
BACU018270/1-965 STLLIVPDHP EHGVLFLVRE LLNVIQDYTW EDNSDEKIRI YTCVLHLLSA
ENSP00000400815/1-1052 STLLIVPDHP EHGVLFLVRE LLNVIQDYTW EDNSDEKIRI YTCVLHLLSA
ENSBTAP00000025864/1-963 STLLIVPDHP EHGVLFLVRE LLNVVQDYTW EENSDEKIRI YTCVLHLLSA
951 1000
bmy_06286T0/1-818 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000002301/1-962 MSQETYLYHV DKVDSNDSLY GGDSKFLAEN NKLCETVMAQ ILEHLKTLAK
BACU018270/1-965 MSQETYLYHV DKVDSNDSLY GGDSKFLAEN NKLCETVMAQ ILEHLKTLAK
ENSP00000400815/1-1052 MSQETYLYHI DKVDSNDSLY GGDSKFLAEN NKLCETVMAQ ILEHLKTLAK
ENSBTAP00000025864/1-963 MSQETYLYHV DKVDSNDSLY GGDSKFLAEN NKLCETVMAQ ILEHLKTLAK
1001 1050
bmy_06286T0/1-818 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000002301/1-962 DEALKRQSSL GLSFFNSILA HGDLRSNRLN QLSVNLWHLA QRHGCADTRT
BACU018270/1-965 DEALKRQSSL GLSFFNSILA HGDLRNNRLN QLSVNLWHLA QRHGCADTRT
ENSP00000400815/1-1052 DEALKRQSSL GLSFFNSILA HGDLRNNKLN QLSVNLWHLA QRHGCADTRT
ENSBTAP00000025864/1-963 DEALKRQSSL GLSFFNSILA HGDLRNNRLN QLSVNLWHLA QRHGCVDTRT
1051 1100
bmy_06286T0/1-818 ---------- ---------- ---------- ---
ENSTTRP00000002301/1-962 MVKTLEYIKK RSKHPDMGHL TELALRLPLQ TRT
BACU018270/1-965 MVKTLEYIKK RSKRPDMGHL TELALRLPLQ TRT
ENSP00000400815/1-1052 MVKTLEYIKK QSKQPDMTHL TELALRLPLQ TRT
ENSBTAP00000025864/1-963 MVKTLEYIKK QSKQPDMGHL TELALRLPLQ TRT